RNA–Protein interactions for RNA: ENST00000522115.6

PTPN12-215, Transcript of protein tyrosine phosphatase, non-receptor type 12, human

TSL 5

Gene PTPN12, Length 642 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN12-215	ENST00000522115	ZRANB1	Q9UGI0	708 aa		12.48	□□□□□ -0.41
PTPN12-215	ENST00000522115	CCDC61	Q9Y6R9	512 aa		12.48	□□□□□ -0.41
PTPN12-215	ENST00000522115	DCAF8	Q5TAQ9	597 aa		12.46	□□□□□ -0.41
PTPN12-215	ENST00000522115	TRIM41	Q8WV44	630 aa		12.44	□□□□□ -0.42
PTPN12-215	ENST00000522115	CLCN6	P51797	869 aa		12.43	□□□□□ -0.42
PTPN12-215	ENST00000522115	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.42	□□□□□ -0.42
PTPN12-215	ENST00000522115	CHRM1	P11229	460 aa	Predicted RBP	12.41	□□□□□ -0.42
PTPN12-215	ENST00000522115	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.39	□□□□□ -0.43
PTPN12-215	ENST00000522115	PKD2	Q13563	968 aa		12.38	□□□□□ -0.43
PTPN12-215	ENST00000522115	KIF12	Q96FN5	646 aa		12.36	□□□□□ -0.43
PTPN12-215	ENST00000522115	PHF12	Q96QT6	1004 aa		12.35	□□□□□ -0.43
PTPN12-215	ENST00000522115	SGIP1	Q9BQI5	828 aa		12.35	□□□□□ -0.43
PTPN12-215	ENST00000522115	PYGB	P11216	843 aa		12.31	□□□□□ -0.44
PTPN12-215	ENST00000522115	RTN4	Q9NQC3	1192 aa	Known RBP	12.29	□□□□□ -0.44
PTPN12-215	ENST00000522115	MAP3K13	O43283	966 aa		12.28	□□□□□ -0.44
PTPN12-215	ENST00000522115	ECM2	O94769	699 aa	Predicted RBP	12.27	□□□□□ -0.45
PTPN12-215	ENST00000522115	GABBR2	O75899	941 aa		12.26	□□□□□ -0.45
PTPN12-215	ENST00000522115	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.24	□□□□□ -0.45
PTPN12-215	ENST00000522115	PCDHB13	Q9Y5F0	798 aa		12.24	□□□□□ -0.45
PTPN12-215	ENST00000522115	MS4A3	Q96HJ5	214 aa		12.23	□□□□□ -0.45
PTPN12-215	ENST00000522115	GALR2	O43603	387 aa	Predicted RBP	12.21	□□□□□ -0.45
PTPN12-215	ENST00000522115	IFNL1	Q8IU54	200 aa		12.21	□□□□□ -0.45
PTPN12-215	ENST00000522115	RNF25	Q96BH1	459 aa	Predicted RBP	12.2	□□□□□ -0.46
PTPN12-215	ENST00000522115	RIOK3	O14730	519 aa	Known RBP	12.18	□□□□□ -0.46
PTPN12-215	ENST00000522115	RGL2	O15211	777 aa		12.16	□□□□□ -0.46
PTPN12-215	ENST00000522115	PCDHB8	Q9UN66	801 aa		12.15	□□□□□ -0.46
PTPN12-215	ENST00000522115	TAOK2	Q9UL54	1235 aa		12.13	□□□□□ -0.47
PTPN12-215	ENST00000522115	TIE1	P35590	1138 aa		12.12	□□□□□ -0.47
PTPN12-215	ENST00000522115	PDAP1	Q13442	181 aa	Known RBP	12.12	□□□□□ -0.47
PTPN12-215	ENST00000522115	VGF	O15240	615 aa	Predicted RBP	12.11	□□□□□ -0.47
PTPN12-215	ENST00000522115	TRPC6	Q9Y210	931 aa		12.09	□□□□□ -0.47
PTPN12-215	ENST00000522115	PSEN1	P49768	467 aa		12.07	□□□□□ -0.48
PTPN12-215	ENST00000522115	ASTL	Q6HA08	431 aa	Predicted RBP	12.07	□□□□□ -0.48
PTPN12-215	ENST00000522115	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.07	□□□□□ -0.48
PTPN12-215	ENST00000522115	DCBLD2	Q96PD2	775 aa		12.05	□□□□□ -0.48
PTPN12-215	ENST00000522115	TTLL13P	A6NNM8	815 aa		12.04	□□□□□ -0.48
PTPN12-215	ENST00000522115	ATMIN	O43313	823 aa	Predicted RBP	12.03	□□□□□ -0.48
PTPN12-215	ENST00000522115	TMEM106C	Q9BVX2	250 aa		12.03	□□□□□ -0.48
PTPN12-215	ENST00000522115	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.01	□□□□□ -0.49
PTPN12-215	ENST00000522115	POTEI	P0CG38	1075 aa		12.01	□□□□□ -0.49
PTPN12-215	ENST00000522115	ZFP91	Q96JP5	570 aa	Predicted RBP	12.01	□□□□□ -0.49
PTPN12-215	ENST00000522115	ATN1	P54259	1190 aa	Predicted RBP	11.97	□□□□□ -0.49
PTPN12-215	ENST00000522115	HS6ST3	Q8IZP7	471 aa		11.97	□□□□□ -0.49
PTPN12-215	ENST00000522115	STK25	O00506	426 aa		11.94	□□□□□ -0.5
PTPN12-215	ENST00000522115	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.94	□□□□□ -0.5
PTPN12-215	ENST00000522115	DNAJC5	Q9H3Z4	198 aa		11.94	□□□□□ -0.5
PTPN12-215	ENST00000522115	TRIM35	Q9UPQ4	493 aa		11.94	□□□□□ -0.5
PTPN12-215	ENST00000522115	IER5L	Q5T953	404 aa		11.92	□□□□□ -0.5
PTPN12-215	ENST00000522115	PELP1	Q8IZL8	1130 aa	Known RBP	11.92	□□□□□ -0.5
PTPN12-215	ENST00000522115	CHGA	P10645	457 aa	Known RBP	11.89	□□□□□ -0.51
PTPN12-215	ENST00000522115	SLC39A7	Q92504	469 aa		11.89	□□□□□ -0.51
PTPN12-215	ENST00000522115	STK24	Q9Y6E0	443 aa		11.89	□□□□□ -0.51
PTPN12-215	ENST00000522115	DCAF8L2	P0C7V8	631 aa		11.88	□□□□□ -0.51
PTPN12-215	ENST00000522115	C7	P10643	843 aa		11.88	□□□□□ -0.51
PTPN12-215	ENST00000522115	CABP2	Q9NPB3	220 aa		11.88	□□□□□ -0.51
PTPN12-215	ENST00000522115	GOLGA2	Q08379	1002 aa		11.86	□□□□□ -0.51
PTPN12-215	ENST00000522115	ILDR1	Q86SU0	546 aa	Predicted RBP	11.85	□□□□□ -0.51
PTPN12-215	ENST00000522115	MKRN3	Q13064	507 aa	Known RBP	11.84	□□□□□ -0.51
PTPN12-215	ENST00000522115	SOX12	O15370	315 aa		11.83	□□□□□ -0.52
PTPN12-215	ENST00000522115	EFCAB3	Q8N7B9	438 aa		11.83	□□□□□ -0.52
PTPN12-215	ENST00000522115	IRX5	P78411	483 aa	Predicted RBP	11.81	□□□□□ -0.52
PTPN12-215	ENST00000522115	METRN	Q9UJH8	293 aa		11.81	□□□□□ -0.52
PTPN12-215	ENST00000522115	LHX8	Q68G74	356 aa		11.78	□□□□□ -0.52
PTPN12-215	ENST00000522115	BBX	Q8WY36	941 aa	Predicted RBP	11.77	□□□□□ -0.53
PTPN12-215	ENST00000522115	OCEL1	Q9H607	264 aa		11.77	□□□□□ -0.53
PTPN12-215	ENST00000522115	NKX1-1	Q15270	411 aa	Predicted RBP	11.76	□□□□□ -0.53
PTPN12-215	ENST00000522115	POTEF	A5A3E0	1075 aa		11.75	□□□□□ -0.53
PTPN12-215	ENST00000522115	PDCD7	Q8N8D1	485 aa	Known RBP	11.75	□□□□□ -0.53
PTPN12-215	ENST00000522115	FBXO22	Q8NEZ5	403 aa		11.75	□□□□□ -0.53
PTPN12-215	ENST00000522115	MFRP	Q9BY79	579 aa		11.75	□□□□□ -0.53
PTPN12-215	ENST00000522115	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.75	□□□□□ -0.53	3e-7	■■■■□ 21.9
PTPN12-215	ENST00000522115	PLCG2	P16885	1265 aa		11.74	□□□□□ -0.53
PTPN12-215	ENST00000522115	NLRP6	P59044	892 aa		11.74	□□□□□ -0.53
PTPN12-215	ENST00000522115	COLQ	Q9Y215	455 aa	Predicted RBP	11.74	□□□□□ -0.53
PTPN12-215	ENST00000522115	SEC24B	O95487	1268 aa		11.73	□□□□□ -0.53
PTPN12-215	ENST00000522115	RYDEN	Q9NUL5	291 aa	Known RBP	11.73	□□□□□ -0.53
PTPN12-215	ENST00000522115	PHF8	Q9UPP1	1060 aa		11.72	□□□□□ -0.53
PTPN12-215	ENST00000522115	MS4A4A	Q96JQ5	239 aa		11.7	□□□□□ -0.54
PTPN12-215	ENST00000522115	GTPBP6	O43824	516 aa	Predicted RBP	11.66	□□□□□ -0.54
PTPN12-215	ENST00000522115	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.66	□□□□□ -0.54
PTPN12-215	ENST00000522115	POTEB2	H3BUK9	544 aa		11.62	□□□□□ -0.55
PTPN12-215	ENST00000522115	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.62	□□□□□ -0.55
PTPN12-215	ENST00000522115	DPY19L2	Q6NUT2	758 aa		11.61	□□□□□ -0.55
PTPN12-215	ENST00000522115	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.6	□□□□□ -0.55
PTPN12-215	ENST00000522115	SPRYD3	Q8NCJ5	442 aa		11.59	□□□□□ -0.55
PTPN12-215	ENST00000522115	BOLA1	Q9Y3E2	137 aa		11.58	□□□□□ -0.56
PTPN12-215	ENST00000522115	POTEJ	P0CG39	1038 aa		11.57	□□□□□ -0.56
PTPN12-215	ENST00000522115	PPP1R37	O75864	691 aa		11.55	□□□□□ -0.56
PTPN12-215	ENST00000522115	MAMSTR	Q6ZN01	415 aa		11.55	□□□□□ -0.56
PTPN12-215	ENST00000522115	MICALL2	Q8IY33	904 aa		11.54	□□□□□ -0.56
PTPN12-215	ENST00000522115	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.52	□□□□□ -0.57
PTPN12-215	ENST00000522115		G3V3G9	751 aa		11.51	□□□□□ -0.57
PTPN12-215	ENST00000522115	PLCB2	Q00722	1185 aa		11.5	□□□□□ -0.57
PTPN12-215	ENST00000522115	SCUBE2	Q9NQ36	999 aa		11.49	□□□□□ -0.57
PTPN12-215	ENST00000522115	C3orf67	Q6ZVT6	689 aa		11.47	□□□□□ -0.57
PTPN12-215	ENST00000522115	CFAP44	Q96MT7	982 aa		11.47	□□□□□ -0.57
PTPN12-215	ENST00000522115	OTUD5	Q96G74	571 aa		11.46	□□□□□ -0.57
PTPN12-215	ENST00000522115	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.45	□□□□□ -0.58
PTPN12-215	ENST00000522115	KIF3C	O14782	793 aa		11.37	□□□□□ -0.59
PTPN12-215	ENST00000522115	TMEM92	Q6UXU6	159 aa		11.37	□□□□□ -0.59

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