RNA–Protein interactions for RNA: ENST00000520846.1

MSR1-211, Transcript of macrophage scavenger receptor 1, human

TSL 4

Gene MSR1, Length 373 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSR1-211	ENST00000520846	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.34	□□□□□ -0.11
MSR1-211	ENST00000520846	CCDC61	Q9Y6R9	512 aa		14.31	□□□□□ -0.12
MSR1-211	ENST00000520846	ZNF579	Q8NAF0	562 aa	Known RBP	14.3	□□□□□ -0.12
MSR1-211	ENST00000520846	PHF12	Q96QT6	1004 aa		14.25	□□□□□ -0.13
MSR1-211	ENST00000520846	SP7	Q8TDD2	431 aa	Predicted RBP	14.23	□□□□□ -0.13
MSR1-211	ENST00000520846	PYGB	P11216	843 aa		14.2	□□□□□ -0.14
MSR1-211	ENST00000520846	TRIM41	Q8WV44	630 aa		14.19	□□□□□ -0.14
MSR1-211	ENST00000520846	KIF12	Q96FN5	646 aa		14.19	□□□□□ -0.14
MSR1-211	ENST00000520846	CLCN6	P51797	869 aa		14.18	□□□□□ -0.14
MSR1-211	ENST00000520846	PKD2	Q13563	968 aa		14.18	□□□□□ -0.14
MSR1-211	ENST00000520846	CHRM1	P11229	460 aa	Predicted RBP	14.17	□□□□□ -0.14
MSR1-211	ENST00000520846	MAP3K13	O43283	966 aa		14.14	□□□□□ -0.15
MSR1-211	ENST00000520846	AMER1	Q5JTC6	1135 aa	Predicted RBP	14.14	□□□□□ -0.15
MSR1-211	ENST00000520846	GABBR2	O75899	941 aa		14.13	□□□□□ -0.15
MSR1-211	ENST00000520846	ECM2	O94769	699 aa	Predicted RBP	14.11	□□□□□ -0.15
MSR1-211	ENST00000520846	PCDHB13	Q9Y5F0	798 aa		14.11	□□□□□ -0.15
MSR1-211	ENST00000520846	SGIP1	Q9BQI5	828 aa		14.1	□□□□□ -0.15
MSR1-211	ENST00000520846	MS4A3	Q96HJ5	214 aa		14.08	□□□□□ -0.16
MSR1-211	ENST00000520846	RTN4	Q9NQC3	1192 aa	Known RBP	14.08	□□□□□ -0.16
MSR1-211	ENST00000520846	GALR2	O43603	387 aa	Predicted RBP	14.07	□□□□□ -0.16
MSR1-211	ENST00000520846	IFNL1	Q8IU54	200 aa		14.04	□□□□□ -0.16
MSR1-211	ENST00000520846	ZNF467	Q7Z7K2	595 aa	Predicted RBP	14.03	□□□□□ -0.16
MSR1-211	ENST00000520846	PCDHB8	Q9UN66	801 aa		14.02	□□□□□ -0.17
MSR1-211	ENST00000520846	RNF25	Q96BH1	459 aa	Predicted RBP	13.98	□□□□□ -0.17
MSR1-211	ENST00000520846	RIOK3	O14730	519 aa	Known RBP	13.96	□□□□□ -0.17
MSR1-211	ENST00000520846	RGL2	O15211	777 aa		13.96	□□□□□ -0.17
MSR1-211	ENST00000520846	TRPC6	Q9Y210	931 aa		13.94	□□□□□ -0.18
MSR1-211	ENST00000520846	DCBLD2	Q96PD2	775 aa		13.92	□□□□□ -0.18
MSR1-211	ENST00000520846	PDAP1	Q13442	181 aa	Known RBP	13.9	□□□□□ -0.18
MSR1-211	ENST00000520846	TIE1	P35590	1138 aa		13.89	□□□□□ -0.19
MSR1-211	ENST00000520846	VGF	O15240	615 aa	Predicted RBP	13.88	□□□□□ -0.19
MSR1-211	ENST00000520846	PSEN1	P49768	467 aa		13.88	□□□□□ -0.19
MSR1-211	ENST00000520846	TAOK2	Q9UL54	1235 aa		13.88	□□□□□ -0.19
MSR1-211	ENST00000520846	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.86	□□□□□ -0.19
MSR1-211	ENST00000520846	TMEM106C	Q9BVX2	250 aa		13.85	□□□□□ -0.19
MSR1-211	ENST00000520846	TTLL13P	A6NNM8	815 aa		13.83	□□□□□ -0.2
MSR1-211	ENST00000520846	ASTL	Q6HA08	431 aa	Predicted RBP	13.83	□□□□□ -0.2
MSR1-211	ENST00000520846	ATMIN	O43313	823 aa	Predicted RBP	13.82	□□□□□ -0.2
MSR1-211	ENST00000520846	POTEI	P0CG38	1075 aa		13.82	□□□□□ -0.2
MSR1-211	ENST00000520846	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.8	□□□□□ -0.2
MSR1-211	ENST00000520846	DCAF8L2	P0C7V8	631 aa		13.8	□□□□□ -0.2
MSR1-211	ENST00000520846	ZFP91	Q96JP5	570 aa	Predicted RBP	13.8	□□□□□ -0.2
MSR1-211	ENST00000520846	ATN1	P54259	1190 aa	Predicted RBP	13.79	□□□□□ -0.2
MSR1-211	ENST00000520846	TRIM35	Q9UPQ4	493 aa		13.75	□□□□□ -0.21
MSR1-211	ENST00000520846	STK25	O00506	426 aa		13.74	□□□□□ -0.21
MSR1-211	ENST00000520846	PELP1	Q8IZL8	1130 aa	Known RBP	13.73	□□□□□ -0.21
MSR1-211	ENST00000520846	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.73	□□□□□ -0.21
MSR1-211	ENST00000520846	CHGA	P10645	457 aa	Known RBP	13.71	□□□□□ -0.21
MSR1-211	ENST00000520846	GOLGA2	Q08379	1002 aa		13.71	□□□□□ -0.21
MSR1-211	ENST00000520846	STK24	Q9Y6E0	443 aa		13.71	□□□□□ -0.21
MSR1-211	ENST00000520846	CABP2	Q9NPB3	220 aa		13.7	□□□□□ -0.22
MSR1-211	ENST00000520846	HS6ST3	Q8IZP7	471 aa		13.68	□□□□□ -0.22
MSR1-211	ENST00000520846	SLC39A7	Q92504	469 aa		13.66	□□□□□ -0.22
MSR1-211	ENST00000520846	MKRN3	Q13064	507 aa	Known RBP	13.65	□□□□□ -0.22
MSR1-211	ENST00000520846	C7	P10643	843 aa		13.64	□□□□□ -0.23
MSR1-211	ENST00000520846	IER5L	Q5T953	404 aa		13.64	□□□□□ -0.23
MSR1-211	ENST00000520846	EFCAB3	Q8N7B9	438 aa		13.62	□□□□□ -0.23
MSR1-211	ENST00000520846	METRN	Q9UJH8	293 aa		13.61	□□□□□ -0.23
MSR1-211	ENST00000520846	SEC24B	O95487	1268 aa		13.56	□□□□□ -0.24
MSR1-211	ENST00000520846	SOX12	O15370	315 aa		13.55	□□□□□ -0.24
MSR1-211	ENST00000520846	IRX5	P78411	483 aa	Predicted RBP	13.54	□□□□□ -0.24
MSR1-211	ENST00000520846	DNAJC5	Q9H3Z4	198 aa		13.54	□□□□□ -0.24
MSR1-211	ENST00000520846	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
MSR1-211	ENST00000520846	OCEL1	Q9H607	264 aa		13.53	□□□□□ -0.24
MSR1-211	ENST00000520846	COLQ	Q9Y215	455 aa	Predicted RBP	13.53	□□□□□ -0.24
MSR1-211	ENST00000520846	PLCG2	P16885	1265 aa		13.52	□□□□□ -0.25
MSR1-211	ENST00000520846	POTEF	A5A3E0	1075 aa		13.5	□□□□□ -0.25
MSR1-211	ENST00000520846	ILDR1	Q86SU0	546 aa	Predicted RBP	13.49	□□□□□ -0.25
MSR1-211	ENST00000520846	PHF8	Q9UPP1	1060 aa		13.49	□□□□□ -0.25
MSR1-211	ENST00000520846	NLRP6	P59044	892 aa		13.48	□□□□□ -0.25
MSR1-211	ENST00000520846	MFRP	Q9BY79	579 aa		13.48	□□□□□ -0.25
MSR1-211	ENST00000520846	NKX1-1	Q15270	411 aa	Predicted RBP	13.47	□□□□□ -0.25
MSR1-211	ENST00000520846	PDCD7	Q8N8D1	485 aa	Known RBP	13.47	□□□□□ -0.25
MSR1-211	ENST00000520846	BBX	Q8WY36	941 aa	Predicted RBP	13.47	□□□□□ -0.25
MSR1-211	ENST00000520846	FBXO22	Q8NEZ5	403 aa		13.44	□□□□□ -0.26
MSR1-211	ENST00000520846	MS4A4A	Q96JQ5	239 aa		13.41	□□□□□ -0.26
MSR1-211	ENST00000520846	DPY19L2	Q6NUT2	758 aa		13.4	□□□□□ -0.26
MSR1-211	ENST00000520846	POTEB2	H3BUK9	544 aa		13.39	□□□□□ -0.27
MSR1-211	ENST00000520846	RYDEN	Q9NUL5	291 aa	Known RBP	13.39	□□□□□ -0.27
MSR1-211	ENST00000520846	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.39	□□□□□ -0.27
MSR1-211	ENST00000520846	LHX8	Q68G74	356 aa		13.36	□□□□□ -0.27
MSR1-211	ENST00000520846	GTPBP6	O43824	516 aa	Predicted RBP	13.35	□□□□□ -0.27
MSR1-211	ENST00000520846	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.35	□□□□□ -0.27
MSR1-211	ENST00000520846	POTEJ	P0CG39	1038 aa		13.32	□□□□□ -0.28
MSR1-211	ENST00000520846		G3V3G9	751 aa		13.31	□□□□□ -0.28
MSR1-211	ENST00000520846	SPRYD3	Q8NCJ5	442 aa		13.3	□□□□□ -0.28
MSR1-211	ENST00000520846	BOLA1	Q9Y3E2	137 aa		13.3	□□□□□ -0.28
MSR1-211	ENST00000520846	PPP1R37	O75864	691 aa		13.29	□□□□□ -0.28
MSR1-211	ENST00000520846	MAMSTR	Q6ZN01	415 aa		13.27	□□□□□ -0.29
MSR1-211	ENST00000520846	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.27	□□□□□ -0.29
MSR1-211	ENST00000520846	MICALL2	Q8IY33	904 aa		13.25	□□□□□ -0.29
MSR1-211	ENST00000520846	CFAP44	Q96MT7	982 aa		13.25	□□□□□ -0.29
MSR1-211	ENST00000520846	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.25	□□□□□ -0.29
MSR1-211	ENST00000520846	SCUBE2	Q9NQ36	999 aa		13.23	□□□□□ -0.29
MSR1-211	ENST00000520846	C3orf67	Q6ZVT6	689 aa		13.22	□□□□□ -0.29
MSR1-211	ENST00000520846	OTUD5	Q96G74	571 aa		13.2	□□□□□ -0.3
MSR1-211	ENST00000520846	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.19	□□□□□ -0.3
MSR1-211	ENST00000520846	PLCB2	Q00722	1185 aa		13.13	□□□□□ -0.31
MSR1-211	ENST00000520846	SLAIN1	Q8ND83	568 aa		13.11	□□□□□ -0.31
MSR1-211	ENST00000520846	TMEM92	Q6UXU6	159 aa		13.07	□□□□□ -0.32

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