RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 TSPYL2Q9H2G4 693 aaPredicted RBP16.96■□□□□ 0.31
SDCBP-208ENST00000520228 RNF25Q96BH1 459 aaPredicted RBP16.95■□□□□ 0.3
SDCBP-208ENST00000520228 DCAF8L2P0C7V8 631 aa16.94■□□□□ 0.3
SDCBP-208ENST00000520228 CCDC61Q9Y6R9 512 aa16.91■□□□□ 0.3
SDCBP-208ENST00000520228 PYGBP11216 843 aa16.89■□□□□ 0.29
SDCBP-208ENST00000520228 RIOK3O14730 519 aaKnown RBP16.83■□□□□ 0.28
SDCBP-208ENST00000520228 PAK3O75914 559 aaPredicted RBP16.82■□□□□ 0.28
SDCBP-208ENST00000520228 CD44P16070 742 aaKnown RBP16.81■□□□□ 0.28
SDCBP-208ENST00000520228 C19orf67A6NJJ6 358 aa16.8■□□□□ 0.28
SDCBP-208ENST00000520228 ZRANB1Q9UGI0 708 aa16.75■□□□□ 0.27
SDCBP-208ENST00000520228 VGFO15240 615 aaPredicted RBP16.72■□□□□ 0.27
SDCBP-208ENST00000520228 SGIP1Q9BQI5 828 aa16.72■□□□□ 0.27
SDCBP-208ENST00000520228 CHGAP10645 457 aaKnown RBP16.71■□□□□ 0.27
SDCBP-208ENST00000520228 KIF12Q96FN5 646 aa16.71■□□□□ 0.27
SDCBP-208ENST00000520228 TAOK2Q9UL54 1235 aa16.71■□□□□ 0.27
SDCBP-208ENST00000520228 HS6ST3Q8IZP7 471 aa16.7■□□□□ 0.26
SDCBP-208ENST00000520228 BBXQ8WY36 941 aaPredicted RBP16.7■□□□□ 0.26
SDCBP-208ENST00000520228 ZNF467Q7Z7K2 595 aaPredicted RBP16.69■□□□□ 0.26
SDCBP-208ENST00000520228 MAP3K13O43283 966 aa16.66■□□□□ 0.26
SDCBP-208ENST00000520228 ZNF579Q8NAF0 562 aaKnown RBP16.66■□□□□ 0.26
SDCBP-208ENST00000520228 PHF12Q96QT6 1004 aa16.64■□□□□ 0.25
SDCBP-208ENST00000520228 DNAJC5Q9H3Z4 198 aa16.64■□□□□ 0.25
SDCBP-208ENST00000520228 PCDHB8Q9UN66 801 aa16.64■□□□□ 0.25
SDCBP-208ENST00000520228 PCDHB13Q9Y5F0 798 aa16.64■□□□□ 0.25
SDCBP-208ENST00000520228 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.62■□□□□ 0.25
SDCBP-208ENST00000520228 SLC24A1O60721 1099 aa16.62■□□□□ 0.25
SDCBP-208ENST00000520228 PLCB2Q00722 1185 aa16.62■□□□□ 0.25
SDCBP-208ENST00000520228 ZFP91Q96JP5 570 aaPredicted RBP16.62■□□□□ 0.25
SDCBP-208ENST00000520228 IFNL1Q8IU54 200 aa16.61■□□□□ 0.25
SDCBP-208ENST00000520228 HAX1O00165 279 aa16.58■□□□□ 0.24
SDCBP-208ENST00000520228 STK25O00506 426 aa16.57■□□□□ 0.24
SDCBP-208ENST00000520228 PDAP1Q13442 181 aaKnown RBP16.57■□□□□ 0.24
SDCBP-208ENST00000520228 EVX2Q03828 476 aa16.56■□□□□ 0.24
SDCBP-208ENST00000520228 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.56■□□□□ 0.24
SDCBP-208ENST00000520228 POTEHQ6S545 545 aa16.54■□□□□ 0.24
SDCBP-208ENST00000520228 BCL11BQ9C0K0 894 aaPredicted RBP16.54■□□□□ 0.24
SDCBP-208ENST00000520228 PSEN1P49768 467 aa16.51■□□□□ 0.23
SDCBP-208ENST00000520228 NKX1-1Q15270 411 aaPredicted RBP16.5■□□□□ 0.23
SDCBP-208ENST00000520228 STK24Q9Y6E0 443 aa16.5■□□□□ 0.23
SDCBP-208ENST00000520228 MS4A3Q96HJ5 214 aa16.47■□□□□ 0.23
SDCBP-208ENST00000520228 PAXIP1Q6ZW49 1069 aaPredicted RBP16.45■□□□□ 0.22
SDCBP-208ENST00000520228 SPRYD3Q8NCJ5 442 aa16.43■□□□□ 0.22
SDCBP-208ENST00000520228 CFAP44Q96MT7 982 aa16.4■□□□□ 0.22
SDCBP-208ENST00000520228 TRPC6Q9Y210 931 aa16.4■□□□□ 0.22
SDCBP-208ENST00000520228 CLCN6P51797 869 aa16.39■□□□□ 0.21
SDCBP-208ENST00000520228 GALR2O43603 387 aaPredicted RBP16.35■□□□□ 0.21
SDCBP-208ENST00000520228 GTPBP6O43824 516 aaPredicted RBP16.35■□□□□ 0.21
SDCBP-208ENST00000520228 TIE1P35590 1138 aa16.3■□□□□ 0.2
SDCBP-208ENST00000520228 HAP1P54257 671 aaPredicted RBP16.3■□□□□ 0.2
SDCBP-208ENST00000520228 TMEM106CQ9BVX2 250 aa16.29■□□□□ 0.2
SDCBP-208ENST00000520228 CABP2Q9NPB3 220 aa16.28■□□□□ 0.2
SDCBP-208ENST00000520228 EFCAB3Q8N7B9 438 aa16.26■□□□□ 0.19
SDCBP-208ENST00000520228 TTLL13PA6NNM8 815 aa16.24■□□□□ 0.19
SDCBP-208ENST00000520228 MFRPQ9BY79 579 aa16.24■□□□□ 0.19
SDCBP-208ENST00000520228 BMP2KQ9NSY1 1161 aaPredicted RBP16.24■□□□□ 0.19
SDCBP-208ENST00000520228 GABBR2O75899 941 aa16.23■□□□□ 0.19
SDCBP-208ENST00000520228 RYDENQ9NUL5 291 aaKnown RBP16.23■□□□□ 0.19
SDCBP-208ENST00000520228 SOX12O15370 315 aa16.2■□□□□ 0.18
SDCBP-208ENST00000520228 TSHZ2Q9NRE2 1034 aa16.18■□□□□ 0.18
SDCBP-208ENST00000520228 FBXO22Q8NEZ5 403 aa16.17■□□□□ 0.18
SDCBP-208ENST00000520228 PHF8Q9UPP1 1060 aa16.14■□□□□ 0.17
SDCBP-208ENST00000520228 ASTLQ6HA08 431 aaPredicted RBP16.13■□□□□ 0.17
SDCBP-208ENST00000520228 VSIG10Q8N0Z9 540 aa16.13■□□□□ 0.17
SDCBP-208ENST00000520228 ATMINO43313 823 aaPredicted RBP16.12■□□□□ 0.17
SDCBP-208ENST00000520228 NLRP6P59044 892 aa16.12■□□□□ 0.17
SDCBP-208ENST00000520228 TRIM35Q9UPQ4 493 aa16.11■□□□□ 0.17
SDCBP-208ENST00000520228 ATN1P54259 1190 aaPredicted RBP16.1■□□□□ 0.17
SDCBP-208ENST00000520228 GOLGA2Q08379 1002 aa16.1■□□□□ 0.17
SDCBP-208ENST00000520228 MKRN3Q13064 507 aaKnown RBP16.08■□□□□ 0.16
SDCBP-208ENST00000520228 ILDR1Q86SU0 546 aaPredicted RBP16.08■□□□□ 0.16
SDCBP-208ENST00000520228 SP7Q8TDD2 431 aaPredicted RBP16.07■□□□□ 0.16
SDCBP-208ENST00000520228 KDM2AQ9Y2K7 1162 aa16.07■□□□□ 0.16
SDCBP-208ENST00000520228 MS4A4AQ96JQ5 239 aa16.06■□□□□ 0.16
SDCBP-208ENST00000520228 PPP1R37O75864 691 aa16.03■□□□□ 0.16
SDCBP-208ENST00000520228 NISCHQ9Y2I1 1504 aa16.03■□□□□ 0.16
SDCBP-208ENST00000520228 DCBLD2Q96PD2 775 aa15.97■□□□□ 0.15
SDCBP-208ENST00000520228 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.97■□□□□ 0.15
SDCBP-208ENST00000520228 IER5LQ5T953 404 aa15.96■□□□□ 0.15
SDCBP-208ENST00000520228 PELP1Q8IZL8 1130 aaKnown RBP15.96■□□□□ 0.15
SDCBP-208ENST00000520228 POTEIP0CG38 1075 aa15.94■□□□□ 0.14
SDCBP-208ENST00000520228 IRX5P78411 483 aaPredicted RBP15.94■□□□□ 0.14
SDCBP-208ENST00000520228 CADPS2Q86UW7 1296 aa15.92■□□□□ 0.14
SDCBP-208ENST00000520228 PDCD7Q8N8D1 485 aaKnown RBP15.91■□□□□ 0.14
SDCBP-208ENST00000520228 OCEL1Q9H607 264 aa15.87■□□□□ 0.13
SDCBP-208ENST00000520228 DPY19L2Q6NUT2 758 aa15.86■□□□□ 0.13
SDCBP-208ENST00000520228 SLC39A7Q92504 469 aa15.82■□□□□ 0.12
SDCBP-208ENST00000520228 COLQQ9Y215 455 aaPredicted RBP15.8■□□□□ 0.12
SDCBP-208ENST00000520228 POTEFA5A3E0 1075 aa15.79■□□□□ 0.12
SDCBP-208ENST00000520228 C7P10643 843 aa15.79■□□□□ 0.12
SDCBP-208ENST00000520228 PLCG2P16885 1265 aa15.78■□□□□ 0.12
SDCBP-208ENST00000520228 TMEM121BQ9BXQ6 578 aaPredicted RBP15.74■□□□□ 0.11
SDCBP-208ENST00000520228 METRNQ9UJH8 293 aa15.74■□□□□ 0.11
SDCBP-208ENST00000520228 NCKAP5LQ9HCH0 1330 aa15.73■□□□□ 0.11
SDCBP-208ENST00000520228 MICALL2Q8IY33 904 aa15.73■□□□□ 0.11
SDCBP-208ENST00000520228 SEC24BO95487 1268 aa15.72■□□□□ 0.11
SDCBP-208ENST00000520228 CRISPLD2Q9H0B8 497 aa15.7■□□□□ 0.1
SDCBP-208ENST00000520228 BOLA1Q9Y3E2 137 aa15.7■□□□□ 0.1
SDCBP-208ENST00000520228 L3MBTL3Q96JM7 780 aaPredicted RBP15.67■□□□□ 0.1
SDCBP-208ENST00000520228 PDE4AP27815 886 aa15.66■□□□□ 0.1
SDCBP-208ENST00000520228 MFSD10Q14728 455 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms