RNA–Protein interactions for RNA: ENST00000517239.1

RNU4-60P-201, Transcript of RNA, U4 small nuclear 60, pseudogene, humanhuman

BASIC

Gene RNU4-60P, Length 135 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-60P-201ENST00000517239 MIER1Q8N108 512 aa6.73□□□□□ -1.33
RNU4-60P-201ENST00000517239 STAG3Q9UJ98 1225 aa6.72□□□□□ -1.33
RNU4-60P-201ENST00000517239 APLP2Q06481 763 aa6.71□□□□□ -1.34
RNU4-60P-201ENST00000517239 P3H3Q8IVL6 736 aa6.71□□□□□ -1.34
RNU4-60P-201ENST00000517239 RSPH6AQ9H0K4 717 aa6.71□□□□□ -1.34
RNU4-60P-201ENST00000517239 SLC24A3Q9HC58 644 aa6.68□□□□□ -1.34
RNU4-60P-201ENST00000517239 ZBTB7CA1YPR0 619 aa6.67□□□□□ -1.34
RNU4-60P-201ENST00000517239 ZC3H15Q8WU90 426 aaKnown RBP6.67□□□□□ -1.34
RNU4-60P-201ENST00000517239 TRIM41Q8WV44 630 aa6.67□□□□□ -1.34
RNU4-60P-201ENST00000517239 CCDC9Q9Y3X0 531 aaKnown RBP6.67□□□□□ -1.34
RNU4-60P-201ENST00000517239 WDR70Q9NW82 654 aa6.65□□□□□ -1.34
RNU4-60P-201ENST00000517239 RNF25Q96BH1 459 aaPredicted RBP6.64□□□□□ -1.35
RNU4-60P-201ENST00000517239 PDIA4P13667 645 aaKnown RBP6.63□□□□□ -1.35
RNU4-60P-201ENST00000517239 KCNV2Q8TDN2 545 aa6.63□□□□□ -1.35
RNU4-60P-201ENST00000517239 POLA2Q14181 598 aa6.61□□□□□ -1.35
RNU4-60P-201ENST00000517239 STK25O00506 426 aa6.6□□□□□ -1.35
RNU4-60P-201ENST00000517239 PELP1Q8IZL8 1130 aaKnown RBP6.59□□□□□ -1.35
RNU4-60P-201ENST00000517239 C1orf115Q9H7X2 142 aa6.59□□□□□ -1.35
RNU4-60P-201ENST00000517239 ZBTB47Q9UFB7 747 aaPredicted RBP6.59□□□□□ -1.35
RNU4-60P-201ENST00000517239 RIOK3O14730 519 aaKnown RBP6.58□□□□□ -1.36
RNU4-60P-201ENST00000517239 PLEKHG5O94827 1062 aa6.58□□□□□ -1.36
RNU4-60P-201ENST00000517239 ARID3CA6NKF2 412 aa6.57□□□□□ -1.36
RNU4-60P-201ENST00000517239 IL27Q8NEV9 243 aa6.57□□□□□ -1.36
RNU4-60P-201ENST00000517239 APBB1O00213 710 aa6.56□□□□□ -1.36
RNU4-60P-201ENST00000517239 RYDENQ9NUL5 291 aaKnown RBP6.56□□□□□ -1.36
RNU4-60P-201ENST00000517239 LOC105371045A0A1W2PR82 267 aa6.55□□□□□ -1.36
RNU4-60P-201ENST00000517239 GSE1Q14687 1217 aa6.55□□□□□ -1.36
RNU4-60P-201ENST00000517239 NECTIN2Q92692 538 aa6.55□□□□□ -1.36
RNU4-60P-201ENST00000517239 ZNF692Q9BU19 519 aaPredicted RBP6.55□□□□□ -1.36
RNU4-60P-201ENST00000517239 STK24Q9Y6E0 443 aa6.53□□□□□ -1.36
RNU4-60P-201ENST00000517239 VGFO15240 615 aaPredicted RBP6.52□□□□□ -1.37
RNU4-60P-201ENST00000517239 ZMYND10O75800 440 aa6.52□□□□□ -1.37
RNU4-60P-201ENST00000517239 CADPS2Q86UW7 1296 aa6.52□□□□□ -1.37
RNU4-60P-201ENST00000517239 GPBP1L1Q9HC44 474 aaPredicted RBP6.52□□□□□ -1.37
RNU4-60P-201ENST00000517239 SHROOM4Q9ULL8 1493 aa6.52□□□□□ -1.37
RNU4-60P-201ENST00000517239 DCAF8Q5TAQ9 597 aa6.51□□□□□ -1.37
RNU4-60P-201ENST00000517239 SEMA3EO15041 775 aa6.49□□□□□ -1.37
RNU4-60P-201ENST00000517239 BCL11BQ9C0K0 894 aaPredicted RBP6.49□□□□□ -1.37
RNU4-60P-201ENST00000517239 TESPA1A2RU30 521 aaPredicted RBP6.48□□□□□ -1.37
RNU4-60P-201ENST00000517239 MYT1Q01538 1121 aa6.48□□□□□ -1.37
RNU4-60P-201ENST00000517239 PABPN1Q86U42 306 aaKnown RBP eCLIP6.48□□□□□ -1.37
RNU4-60P-201ENST00000517239 ARHGEF1Q92888 912 aaKnown RBP6.48□□□□□ -1.37
RNU4-60P-201ENST00000517239 MKRN3Q13064 507 aaKnown RBP6.47□□□□□ -1.37
RNU4-60P-201ENST00000517239 KCTD17Q8N5Z5 321 aa6.47□□□□□ -1.37
RNU4-60P-201ENST00000517239 AK7Q96M32 723 aa6.47□□□□□ -1.37
RNU4-60P-201ENST00000517239 ZBTB12Q9Y330 459 aaPredicted RBP6.47□□□□□ -1.37
RNU4-60P-201ENST00000517239 BARGINQ6ZT62 677 aa6.46□□□□□ -1.38
RNU4-60P-201ENST00000517239 TTBK1Q5TCY1 1321 aaPredicted RBP6.46□□□□□ -1.38
RNU4-60P-201ENST00000517239 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.45□□□□□ -1.38
RNU4-60P-201ENST00000517239 RAD21O60216 631 aa6.45□□□□□ -1.38
RNU4-60P-201ENST00000517239 KRI1Q8N9T8 703 aaKnown RBP6.45□□□□□ -1.38
RNU4-60P-201ENST00000517239 ZFP91Q96JP5 570 aaPredicted RBP6.45□□□□□ -1.38
RNU4-60P-201ENST00000517239 SPINK5Q9NQ38 1064 aaPredicted RBP6.45□□□□□ -1.38
RNU4-60P-201ENST00000517239 KDM4CQ9H3R0 1056 aa6.44□□□□□ -1.38
RNU4-60P-201ENST00000517239 SMYD5Q6GMV2 418 aa6.43□□□□□ -1.38
RNU4-60P-201ENST00000517239 CCDC82Q8N4S0 544 aa6.42□□□□□ -1.38
RNU4-60P-201ENST00000517239 SGIP1Q9BQI5 828 aa6.42□□□□□ -1.38
RNU4-60P-201ENST00000517239 IGSF3O75054 1194 aa6.41□□□□□ -1.38
RNU4-60P-201ENST00000517239 NUBP1P53384 320 aa6.41□□□□□ -1.38
RNU4-60P-201ENST00000517239 E2F4Q16254 413 aa6.41□□□□□ -1.38
RNU4-60P-201ENST00000517239 CAPN15O75808 1086 aa6.4□□□□□ -1.38
RNU4-60P-201ENST00000517239 AEBP1Q8IUX7 1158 aa6.4□□□□□ -1.38
RNU4-60P-201ENST00000517239 SSUH2Q9Y2M2 353 aa6.4□□□□□ -1.38
RNU4-60P-201ENST00000517239 ZNF316A6NFI3 1004 aaPredicted RBP6.38□□□□□ -1.39
RNU4-60P-201ENST00000517239 SPDYE2BA6NHP3 402 aa6.38□□□□□ -1.39
RNU4-60P-201ENST00000517239 SPDYE6P0CI01 402 aa6.38□□□□□ -1.39
RNU4-60P-201ENST00000517239 FLIIQ13045 1269 aa6.38□□□□□ -1.39
RNU4-60P-201ENST00000517239 SPDYE2Q495Y8 402 aa6.38□□□□□ -1.39
RNU4-60P-201ENST00000517239 RGS22Q8NE09 1264 aa6.38□□□□□ -1.39
RNU4-60P-201ENST00000517239 MTMR7Q9Y216 660 aa6.38□□□□□ -1.39
RNU4-60P-201ENST00000517239 PDE4DQ08499 809 aa6.37□□□□□ -1.39
RNU4-60P-201ENST00000517239 TRAIPQ9BWF2 469 aa6.37□□□□□ -1.39
RNU4-60P-201ENST00000517239 TRAK2O60296 914 aa6.36□□□□□ -1.39
RNU4-60P-201ENST00000517239 ABCB7O75027 752 aa6.36□□□□□ -1.39
RNU4-60P-201ENST00000517239 CHRM1P11229 460 aaPredicted RBP6.36□□□□□ -1.39
RNU4-60P-201ENST00000517239 TRIM66O15016 1216 aa6.35□□□□□ -1.39
RNU4-60P-201ENST00000517239 RBM25P49756 843 aaKnown RBP6.35□□□□□ -1.39
RNU4-60P-201ENST00000517239 TMCO4Q5TGY1 634 aa6.35□□□□□ -1.39
RNU4-60P-201ENST00000517239 CLUAP1Q96AJ1 413 aa6.35□□□□□ -1.39
RNU4-60P-201ENST00000517239 FAM212AQ96EL1 285 aa6.35□□□□□ -1.39
RNU4-60P-201ENST00000517239 FAM117AQ9C073 453 aa6.35□□□□□ -1.39
RNU4-60P-201ENST00000517239 OSCARQ8IYS5 282 aa6.34□□□□□ -1.39
RNU4-60P-201ENST00000517239 A6NJR5 290 aa6.33□□□□□ -1.4
RNU4-60P-201ENST00000517239 HMGB1P09429 215 aaKnown RBP6.33□□□□□ -1.4
RNU4-60P-201ENST00000517239 FOXD4L5Q5VV16 416 aaPredicted RBP6.33□□□□□ -1.4
RNU4-60P-201ENST00000517239 FOXD4L4Q8WXT5 416 aaPredicted RBP6.33□□□□□ -1.4
RNU4-60P-201ENST00000517239 GZF1Q9H116 711 aaPredicted RBP6.33□□□□□ -1.4
RNU4-60P-201ENST00000517239 EIF5BO60841 1220 aaKnown RBP6.32□□□□□ -1.4
RNU4-60P-201ENST00000517239 GPIHBP1Q8IV16 184 aa6.32□□□□□ -1.4
RNU4-60P-201ENST00000517239 ZNF428Q96B54 188 aa6.32□□□□□ -1.4
RNU4-60P-201ENST00000517239 MFAP1P55081 439 aaKnown RBP6.31□□□□□ -1.4
RNU4-60P-201ENST00000517239 RBM26Q5T8P6 1007 aaKnown RBP6.31□□□□□ -1.4
RNU4-60P-201ENST00000517239 ZNF777Q9ULD5 760 aaPredicted RBP6.31□□□□□ -1.4
RNU4-60P-201ENST00000517239 PYGBP11216 843 aa6.3□□□□□ -1.4
RNU4-60P-201ENST00000517239 CDK11BP21127 795 aaKnown RBP6.3□□□□□ -1.4
RNU4-60P-201ENST00000517239 CDK11AQ9UQ88 783 aaPredicted RBP6.3□□□□□ -1.4
RNU4-60P-201ENST00000517239 PLEKHG3A1L390 1219 aa6.28□□□□□ -1.4
RNU4-60P-201ENST00000517239 E9PSI1 815 aa6.27□□□□□ -1.41
RNU4-60P-201ENST00000517239 HSP90B1P14625 803 aaKnown RBP6.27□□□□□ -1.41
RNU4-60P-201ENST00000517239 CCDC97Q96F63 343 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms