RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 SPDYE2BA6NHP3 402 aa12.76□□□□□ -0.37
NPHP3-211ENST00000515289 SPDYE6P0CI01 402 aa12.76□□□□□ -0.37
NPHP3-211ENST00000515289 SPDYE2Q495Y8 402 aa12.76□□□□□ -0.37
NPHP3-211ENST00000515289 GTPBP6O43824 516 aaPredicted RBP12.75□□□□□ -0.37
NPHP3-211ENST00000515289 RNF25Q96BH1 459 aaPredicted RBP12.75□□□□□ -0.37
NPHP3-211ENST00000515289 PABPN1Q86U42 306 aaKnown RBP eCLIP12.72□□□□□ -0.37
NPHP3-211ENST00000515289 GSE1Q14687 1217 aa12.69□□□□□ -0.38
NPHP3-211ENST00000515289 ABCB7O75027 752 aa12.68□□□□□ -0.38
NPHP3-211ENST00000515289 RIOK3O14730 519 aaKnown RBP12.65□□□□□ -0.38
NPHP3-211ENST00000515289 P3H3Q8IVL6 736 aa12.65□□□□□ -0.38
NPHP3-211ENST00000515289 OSCARQ8IYS5 282 aa12.62□□□□□ -0.39
NPHP3-211ENST00000515289 RNF39Q9H2S5 420 aa12.61□□□□□ -0.39
NPHP3-211ENST00000515289 RYDENQ9NUL5 291 aaKnown RBP12.59□□□□□ -0.39
NPHP3-211ENST00000515289 STK25O00506 426 aa12.57□□□□□ -0.4
NPHP3-211ENST00000515289 VGFO15240 615 aaPredicted RBP12.55□□□□□ -0.4
NPHP3-211ENST00000515289 LMOD2Q6P5Q4 547 aa12.54□□□□□ -0.4
NPHP3-211ENST00000515289 C1QBPQ07021 282 aaKnown RBP12.53□□□□□ -0.4
NPHP3-211ENST00000515289 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.53□□□□□ -0.4
NPHP3-211ENST00000515289 NUBP1P53384 320 aa12.51□□□□□ -0.41
NPHP3-211ENST00000515289 BRPF1P55201 1214 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-211ENST00000515289 SGIP1Q9BQI5 828 aa12.5□□□□□ -0.41
NPHP3-211ENST00000515289 DCAF8Q5TAQ9 597 aa12.46□□□□□ -0.41
NPHP3-211ENST00000515289 KCNV2Q8TDN2 545 aa12.44□□□□□ -0.42
NPHP3-211ENST00000515289 CHRM1P11229 460 aaPredicted RBP12.42□□□□□ -0.42
NPHP3-211ENST00000515289 BCL11BQ9C0K0 894 aaPredicted RBP12.42□□□□□ -0.42
NPHP3-211ENST00000515289 STK24Q9Y6E0 443 aa12.42□□□□□ -0.42
NPHP3-211ENST00000515289 WDR70Q9NW82 654 aa12.4□□□□□ -0.42
NPHP3-211ENST00000515289 SUPT5HO00267 1087 aaKnown RBP12.39□□□□□ -0.43
NPHP3-211ENST00000515289 FAM212AQ96EL1 285 aa12.39□□□□□ -0.43
NPHP3-211ENST00000515289 DSG3P32926 999 aa12.38□□□□□ -0.43
NPHP3-211ENST00000515289 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.37□□□□□ -0.43
NPHP3-211ENST00000515289 ZFP91Q96JP5 570 aaPredicted RBP12.37□□□□□ -0.43
NPHP3-211ENST00000515289 NEUROD2Q15784 382 aa12.34□□□□□ -0.43
NPHP3-211ENST00000515289 ZC3H15Q8WU90 426 aaKnown RBP12.33□□□□□ -0.44
NPHP3-211ENST00000515289 CADPS2Q86UW7 1296 aa12.3□□□□□ -0.44
NPHP3-211ENST00000515289 PODXL2Q9NZ53 605 aa12.29□□□□□ -0.44
NPHP3-211ENST00000515289 ARHGEF1Q92888 912 aaKnown RBP12.25□□□□□ -0.45
NPHP3-211ENST00000515289 SLC24A3Q9HC58 644 aa12.25□□□□□ -0.45
NPHP3-211ENST00000515289 RANGAP1P46060 587 aaPredicted RBP12.23□□□□□ -0.45
NPHP3-211ENST00000515289 MNX1P50219 401 aaPredicted RBP12.19□□□□□ -0.46
NPHP3-211ENST00000515289 TESPA1A2RU30 521 aaPredicted RBP12.18□□□□□ -0.46
NPHP3-211ENST00000515289 RASEFQ8IZ41 740 aa12.18□□□□□ -0.46
NPHP3-211ENST00000515289 PYGBP11216 843 aa12.15□□□□□ -0.46
NPHP3-211ENST00000515289 CREBZFQ9NS37 354 aa12.15□□□□□ -0.46
NPHP3-211ENST00000515289 ZMYND10O75800 440 aa12.14□□□□□ -0.47
NPHP3-211ENST00000515289 UBTFP17480 764 aaKnown RBP12.14□□□□□ -0.47
NPHP3-211ENST00000515289 E2F4Q16254 413 aa12.12□□□□□ -0.47
NPHP3-211ENST00000515289 SEMA3EO15041 775 aa12.11□□□□□ -0.47
NPHP3-211ENST00000515289 SPDYE1Q8NFV5 336 aaPredicted RBP12.1□□□□□ -0.47
NPHP3-211ENST00000515289 ZMYND15Q9H091 742 aa12.09□□□□□ -0.47
NPHP3-211ENST00000515289 SMYD5Q6GMV2 418 aa12.06□□□□□ -0.48
NPHP3-211ENST00000515289 RSPH6AQ9H0K4 717 aa12.06□□□□□ -0.48
NPHP3-211ENST00000515289 ZNF467Q7Z7K2 595 aaPredicted RBP12.05□□□□□ -0.48
NPHP3-211ENST00000515289 TRIM26Q12899 539 aaPredicted RBP12.03□□□□□ -0.48
NPHP3-211ENST00000515289 BARGINQ6ZT62 677 aa12.03□□□□□ -0.48
NPHP3-211ENST00000515289 MFRPQ9BY79 579 aa12.03□□□□□ -0.48
NPHP3-211ENST00000515289 PDAP1Q13442 181 aaKnown RBP12.02□□□□□ -0.49
NPHP3-211ENST00000515289 PRR29P0C7W0 189 aa12.01□□□□□ -0.49
NPHP3-211ENST00000515289 AK7Q96M32 723 aa11.98□□□□□ -0.49
NPHP3-211ENST00000515289 GPBP1L1Q9HC44 474 aaPredicted RBP11.94□□□□□ -0.5
NPHP3-211ENST00000515289 ARIH1Q9Y4X5 557 aaPredicted RBP11.94□□□□□ -0.5
NPHP3-211ENST00000515289 CLEC11AQ9Y240 323 aa11.93□□□□□ -0.5
NPHP3-211ENST00000515289 PPP1R37O75864 691 aa11.92□□□□□ -0.5
NPHP3-211ENST00000515289 HRCP23327 699 aa11.92□□□□□ -0.5
NPHP3-211ENST00000515289 IL27Q8NEV9 243 aa11.92□□□□□ -0.5
NPHP3-211ENST00000515289 CACNB1Q02641 598 aaPredicted RBP11.91□□□□□ -0.5
NPHP3-211ENST00000515289 NPM2Q86SE8 214 aaKnown RBP11.9□□□□□ -0.5
NPHP3-211ENST00000515289 KDM4CQ9H3R0 1056 aa11.9□□□□□ -0.5
NPHP3-211ENST00000515289 AKT1S1Q96B36 256 aa11.88□□□□□ -0.51
NPHP3-211ENST00000515289 PSEN1P49768 467 aa11.87□□□□□ -0.51
NPHP3-211ENST00000515289 NLRP6P59044 892 aa11.87□□□□□ -0.51
NPHP3-211ENST00000515289 FBXO22Q8NEZ5 403 aa11.87□□□□□ -0.51
NPHP3-211ENST00000515289 NCKAP5LQ9HCH0 1330 aa11.86□□□□□ -0.51
NPHP3-211ENST00000515289 MFSD10Q14728 455 aa11.85□□□□□ -0.51
NPHP3-211ENST00000515289 PCDHB8Q9UN66 801 aa11.85□□□□□ -0.51
NPHP3-211ENST00000515289 PCDHB13Q9Y5F0 798 aa11.85□□□□□ -0.51
NPHP3-211ENST00000515289 GPIHBP1Q8IV16 184 aa11.84□□□□□ -0.51
NPHP3-211ENST00000515289 KRI1Q8N9T8 703 aaKnown RBP11.84□□□□□ -0.51
NPHP3-211ENST00000515289 PDE4AP27815 886 aa11.83□□□□□ -0.52
NPHP3-211ENST00000515289 C1orf115Q9H7X2 142 aa11.83□□□□□ -0.52
NPHP3-211ENST00000515289 SOX12O15370 315 aa11.82□□□□□ -0.52
NPHP3-211ENST00000515289 ZNF579Q8NAF0 562 aaKnown RBP11.82□□□□□ -0.52
NPHP3-211ENST00000515289 ARID3AQ99856 593 aa11.82□□□□□ -0.52
NPHP3-211ENST00000515289 LARP6Q9BRS8 491 aaKnown RBP11.82□□□□□ -0.52
NPHP3-211ENST00000515289 TRIM66O15016 1216 aa11.8□□□□□ -0.52
NPHP3-211ENST00000515289 PDE4DQ08499 809 aa11.8□□□□□ -0.52
NPHP3-211ENST00000515289 CAMK2BQ13554 666 aa11.79□□□□□ -0.52
NPHP3-211ENST00000515289 RBM26Q5T8P6 1007 aaKnown RBP11.79□□□□□ -0.52
NPHP3-211ENST00000515289 TSPYL2Q9H2G4 693 aaPredicted RBP11.78□□□□□ -0.52
NPHP3-211ENST00000515289 MKRN3Q13064 507 aaKnown RBP11.77□□□□□ -0.53
NPHP3-211ENST00000515289 EFCAB3Q8N7B9 438 aa11.77□□□□□ -0.53
NPHP3-211ENST00000515289 RBM42Q9BTD8 480 aaKnown RBP11.77□□□□□ -0.53
NPHP3-211ENST00000515289 PHF8Q9UPP1 1060 aa11.77□□□□□ -0.53
NPHP3-211ENST00000515289 DDX27Q96GQ7 796 aaKnown RBP11.76□□□□□ -0.53
NPHP3-211ENST00000515289 CRISPLD2Q9H0B8 497 aa11.76□□□□□ -0.53
NPHP3-211ENST00000515289 REM2Q8IYK8 340 aaPredicted RBP11.74□□□□□ -0.53
NPHP3-211ENST00000515289 FLIIQ13045 1269 aa11.73□□□□□ -0.53
NPHP3-211ENST00000515289 MLLT3P42568 568 aaPredicted RBP11.72□□□□□ -0.53
NPHP3-211ENST00000515289 APBB1O00213 710 aa11.71□□□□□ -0.53
NPHP3-211ENST00000515289 CABP2Q9NPB3 220 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms