RNA–Protein interactions for RNA: ENST00000514572.1

RFC1-216, Transcript of replication factor C subunit 1, humanhuman

TSL 2

Gene RFC1, Length 584 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-216ENST00000514572 DNAJC5Q9H3Z4 198 aa11.49□□□□□ -0.57
RFC1-216ENST00000514572 TSHZ2Q9NRE2 1034 aa11.49□□□□□ -0.57
RFC1-216ENST00000514572 CHGAP10645 457 aaKnown RBP11.48□□□□□ -0.57
RFC1-216ENST00000514572 HS6ST3Q8IZP7 471 aa11.48□□□□□ -0.57
RFC1-216ENST00000514572 FXR2P51116 673 aaKnown RBP eCLIP11.47□□□□□ -0.571e-7■■■□□ 17.4
RFC1-216ENST00000514572 SPDYE1Q8NFV5 336 aaPredicted RBP11.47□□□□□ -0.57
RFC1-216ENST00000514572 RNF25Q96BH1 459 aaPredicted RBP11.47□□□□□ -0.57
RFC1-216ENST00000514572 CLEC11AQ9Y240 323 aa11.46□□□□□ -0.57
RFC1-216ENST00000514572 NUBP1P53384 320 aa11.43□□□□□ -0.58
RFC1-216ENST00000514572 GSE1Q14687 1217 aa11.39□□□□□ -0.59
RFC1-216ENST00000514572 TPRNQ4KMQ1 711 aa11.35□□□□□ -0.59
RFC1-216ENST00000514572 NKX1-1Q15270 411 aaPredicted RBP11.33□□□□□ -0.6
RFC1-216ENST00000514572 PRKAR2AP13861 404 aaKnown RBP11.32□□□□□ -0.6
RFC1-216ENST00000514572 MNX1P50219 401 aaPredicted RBP11.32□□□□□ -0.6
RFC1-216ENST00000514572 RIOK3O14730 519 aaKnown RBP11.3□□□□□ -0.6
RFC1-216ENST00000514572 PRR29P0C7W0 189 aa11.29□□□□□ -0.6
RFC1-216ENST00000514572 CREBZFQ9NS37 354 aa11.29□□□□□ -0.6
RFC1-216ENST00000514572 HAX1O00165 279 aa11.28□□□□□ -0.6
RFC1-216ENST00000514572 GTPBP6O43824 516 aaPredicted RBP11.26□□□□□ -0.61
RFC1-216ENST00000514572 CHRM1P11229 460 aaPredicted RBP11.25□□□□□ -0.61
RFC1-216ENST00000514572 CHADLQ6NUI6 762 aa11.24□□□□□ -0.61
RFC1-216ENST00000514572 DCAF8Q5TAQ9 597 aa11.23□□□□□ -0.61
RFC1-216ENST00000514572 FAM212AQ96EL1 285 aa11.23□□□□□ -0.61
RFC1-216ENST00000514572 SGIP1Q9BQI5 828 aa11.23□□□□□ -0.61
RFC1-216ENST00000514572 VGFO15240 615 aaPredicted RBP11.22□□□□□ -0.61
RFC1-216ENST00000514572 SP7Q8TDD2 431 aaPredicted RBP11.22□□□□□ -0.61
RFC1-216ENST00000514572 RASEFQ8IZ41 740 aa11.19□□□□□ -0.62
RFC1-216ENST00000514572 STK25O00506 426 aa11.17□□□□□ -0.62
RFC1-216ENST00000514572 EVX2Q03828 476 aa11.17□□□□□ -0.62
RFC1-216ENST00000514572 NBR1Q14596 966 aa11.17□□□□□ -0.62
RFC1-216ENST00000514572 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.11□□□□□ -0.63
RFC1-216ENST00000514572 C19orf67A6NJJ6 358 aa11.11□□□□□ -0.63
RFC1-216ENST00000514572 ZFP91Q96JP5 570 aaPredicted RBP11.11□□□□□ -0.63
RFC1-216ENST00000514572 BCL11BQ9C0K0 894 aaPredicted RBP11.1□□□□□ -0.63
RFC1-216ENST00000514572 FARP1Q9Y4F1 1045 aaPredicted RBP11.08□□□□□ -0.64
RFC1-216ENST00000514572 RYDENQ9NUL5 291 aaKnown RBP11.07□□□□□ -0.64
RFC1-216ENST00000514572 STK24Q9Y6E0 443 aa11.06□□□□□ -0.64
RFC1-216ENST00000514572 PYGBP11216 843 aa11.04□□□□□ -0.64
RFC1-216ENST00000514572 CD44P16070 742 aaKnown RBP10.96□□□□□ -0.65
RFC1-216ENST00000514572 ZNF467Q7Z7K2 595 aaPredicted RBP10.94□□□□□ -0.66
RFC1-216ENST00000514572 GABBR2O75899 941 aa10.92□□□□□ -0.66
RFC1-216ENST00000514572 P3H3Q8IVL6 736 aa10.92□□□□□ -0.66
RFC1-216ENST00000514572 CADPS2Q86UW7 1296 aa10.91□□□□□ -0.66
RFC1-216ENST00000514572 PDAP1Q13442 181 aaKnown RBP10.9□□□□□ -0.66
RFC1-216ENST00000514572 KCNV2Q8TDN2 545 aa10.87□□□□□ -0.67
RFC1-216ENST00000514572 CCDC61Q9Y6R9 512 aa10.86□□□□□ -0.67
RFC1-216ENST00000514572 MFRPQ9BY79 579 aa10.85□□□□□ -0.67
RFC1-216ENST00000514572 TSPYL2Q9H2G4 693 aaPredicted RBP10.85□□□□□ -0.67
RFC1-216ENST00000514572 ZRANB1Q9UGI0 708 aa10.84□□□□□ -0.67
RFC1-216ENST00000514572 ZNF579Q8NAF0 562 aaKnown RBP10.83□□□□□ -0.68
RFC1-216ENST00000514572 PCDHB8Q9UN66 801 aa10.83□□□□□ -0.68
RFC1-216ENST00000514572 PCDHB13Q9Y5F0 798 aa10.83□□□□□ -0.68
RFC1-216ENST00000514572 PSEN1P49768 467 aa10.79□□□□□ -0.68
RFC1-216ENST00000514572 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.77□□□□□ -0.69
RFC1-216ENST00000514572 PAK3O75914 559 aaPredicted RBP10.76□□□□□ -0.69
RFC1-216ENST00000514572 FBXO22Q8NEZ5 403 aa10.76□□□□□ -0.69
RFC1-216ENST00000514572 WDR70Q9NW82 654 aa10.76□□□□□ -0.69
RFC1-216ENST00000514572 CLCN6P51797 869 aa10.75□□□□□ -0.69
RFC1-216ENST00000514572 LMOD2Q6P5Q4 547 aa10.74□□□□□ -0.69
RFC1-216ENST00000514572 PPP1R37O75864 691 aa10.73□□□□□ -0.69
RFC1-216ENST00000514572 TIMELESSQ9UNS1 1208 aa10.73□□□□□ -0.69
RFC1-216ENST00000514572 TMEM132AQ24JP5 1023 aa10.72□□□□□ -0.69
RFC1-216ENST00000514572 IFNL1Q8IU54 200 aa10.72□□□□□ -0.69
RFC1-216ENST00000514572 ARHGEF1Q92888 912 aaKnown RBP10.7□□□□□ -0.7
RFC1-216ENST00000514572 PHF12Q96QT6 1004 aa10.7□□□□□ -0.7
RFC1-216ENST00000514572 POTEIP0CG38 1075 aa10.69□□□□□ -0.7
RFC1-216ENST00000514572 KIF12Q96FN5 646 aa10.69□□□□□ -0.7
RFC1-216ENST00000514572 GTF3C3Q9Y5Q9 886 aa10.69□□□□□ -0.7
RFC1-216ENST00000514572 SOX12O15370 315 aa10.68□□□□□ -0.7
RFC1-216ENST00000514572 EFCAB3Q8N7B9 438 aa10.68□□□□□ -0.7
RFC1-216ENST00000514572 TULP1O00294 542 aaPredicted RBP10.67□□□□□ -0.7
RFC1-216ENST00000514572 GALR2O43603 387 aaPredicted RBP10.67□□□□□ -0.7
RFC1-216ENST00000514572 NLRP6P59044 892 aa10.67□□□□□ -0.7
RFC1-216ENST00000514572 MAP3K13O43283 966 aa10.66□□□□□ -0.7
RFC1-216ENST00000514572 PHF8Q9UPP1 1060 aa10.65□□□□□ -0.7
RFC1-216ENST00000514572 E2F4Q16254 413 aa10.64□□□□□ -0.71
RFC1-216ENST00000514572 DCBLD2Q96PD2 775 aa10.64□□□□□ -0.71
RFC1-216ENST00000514572 CABP2Q9NPB3 220 aa10.64□□□□□ -0.71
RFC1-216ENST00000514572 TESPA1A2RU30 521 aaPredicted RBP10.63□□□□□ -0.71
RFC1-216ENST00000514572 NCKAP5LQ9HCH0 1330 aa10.62□□□□□ -0.71
RFC1-216ENST00000514572 MFSD10Q14728 455 aa10.6□□□□□ -0.71
RFC1-216ENST00000514572 MS4A4AQ96JQ5 239 aa10.6□□□□□ -0.71
RFC1-216ENST00000514572 ZC3H15Q8WU90 426 aaKnown RBP10.59□□□□□ -0.71
RFC1-216ENST00000514572 ARIH1Q9Y4X5 557 aaPredicted RBP10.59□□□□□ -0.71
RFC1-216ENST00000514572 BRPF1P55201 1214 aaPredicted RBP10.58□□□□□ -0.72
RFC1-216ENST00000514572 SEMA3EO15041 775 aa10.57□□□□□ -0.72
RFC1-216ENST00000514572 CRISPLD2Q9H0B8 497 aa10.57□□□□□ -0.72
RFC1-216ENST00000514572 ERICH6Q7L0X2 663 aa10.56□□□□□ -0.72
RFC1-216ENST00000514572 MS4A3Q96HJ5 214 aa10.56□□□□□ -0.72
RFC1-216ENST00000514572 LHX8Q68G74 356 aa10.53□□□□□ -0.72
RFC1-216ENST00000514572 CAMK2BQ13554 666 aa10.52□□□□□ -0.73
RFC1-216ENST00000514572 PDE4AP27815 886 aa10.5□□□□□ -0.73
RFC1-216ENST00000514572 LARP6Q9BRS8 491 aaKnown RBP10.5□□□□□ -0.73
RFC1-216ENST00000514572 ZMYND10O75800 440 aa10.48□□□□□ -0.73
RFC1-216ENST00000514572 ILDR1Q86SU0 546 aaPredicted RBP10.47□□□□□ -0.73
RFC1-216ENST00000514572 PELP1Q8IZL8 1130 aaKnown RBP10.46□□□□□ -0.73
RFC1-216ENST00000514572 DDX27Q96GQ7 796 aaKnown RBP10.46□□□□□ -0.73
RFC1-216ENST00000514572 SLC24A3Q9HC58 644 aa10.46□□□□□ -0.73
RFC1-216ENST00000514572 ASTLQ6HA08 431 aaPredicted RBP10.44□□□□□ -0.74
RFC1-216ENST00000514572 ATMINO43313 823 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms