RNA–Protein interactions for RNA: ENST00000513873.1

CLDND1-228, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 538 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-228ENST00000513873 PELP1Q8IZL8 1130 aaKnown RBP12.08□□□□□ -0.48
CLDND1-228ENST00000513873 SCUBE2Q9NQ36 999 aa12.07□□□□□ -0.48
CLDND1-228ENST00000513873 FAM163AQ96GL9 167 aaPredicted RBP12.06□□□□□ -0.48
CLDND1-228ENST00000513873 ASTLQ6HA08 431 aaPredicted RBP12.03□□□□□ -0.48
CLDND1-228ENST00000513873 ATMINO43313 823 aaPredicted RBP11.99□□□□□ -0.49
CLDND1-228ENST00000513873 MS4A3Q96HJ5 214 aa11.96□□□□□ -0.49
CLDND1-228ENST00000513873 POTEJP0CG39 1038 aa11.92□□□□□ -0.5
CLDND1-228ENST00000513873 FKBP8Q14318 412 aa11.9□□□□□ -0.5
CLDND1-228ENST00000513873 LCE2DQ5TA82 110 aaPredicted RBP11.88□□□□□ -0.51
CLDND1-228ENST00000513873 SPDYE4A6NLX3 237 aa11.87□□□□□ -0.51
CLDND1-228ENST00000513873 MNX1P50219 401 aaPredicted RBP11.84□□□□□ -0.51
CLDND1-228ENST00000513873 ATN1P54259 1190 aaPredicted RBP11.83□□□□□ -0.52
CLDND1-228ENST00000513873 CDAN1Q8IWY9 1227 aa11.82□□□□□ -0.52
CLDND1-228ENST00000513873 TSPYL2Q9H2G4 693 aaPredicted RBP11.81□□□□□ -0.52
CLDND1-228ENST00000513873 SEC24BO95487 1268 aa11.78□□□□□ -0.52
CLDND1-228ENST00000513873 BMP2KQ9NSY1 1161 aaPredicted RBP11.71□□□□□ -0.53
CLDND1-228ENST00000513873 CCDC61Q9Y6R9 512 aa11.71□□□□□ -0.53
CLDND1-228ENST00000513873 TIE1P35590 1138 aa11.7□□□□□ -0.54
CLDND1-228ENST00000513873 KIF12Q96FN5 646 aa11.7□□□□□ -0.54
CLDND1-228ENST00000513873 POTEFA5A3E0 1075 aa11.66□□□□□ -0.54
CLDND1-228ENST00000513873 PLEKHG5O94827 1062 aa11.66□□□□□ -0.54
CLDND1-228ENST00000513873 SLAIN1Q8ND83 568 aa11.61□□□□□ -0.55
CLDND1-228ENST00000513873 MAP3K13O43283 966 aa11.6□□□□□ -0.55
CLDND1-228ENST00000513873 IER5LQ5T953 404 aa11.6□□□□□ -0.55
CLDND1-228ENST00000513873 COLQQ9Y215 455 aaPredicted RBP11.6□□□□□ -0.55
CLDND1-228ENST00000513873 TTLL13PA6NNM8 815 aa11.58□□□□□ -0.56
CLDND1-228ENST00000513873 ST18O60284 1047 aa11.58□□□□□ -0.56
CLDND1-228ENST00000513873 TRPC6Q9Y210 931 aa11.57□□□□□ -0.56
CLDND1-228ENST00000513873 MMRN1Q13201 1228 aa11.56□□□□□ -0.56
CLDND1-228ENST00000513873 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
CLDND1-228ENST00000513873 PROM2Q8N271 834 aa11.54□□□□□ -0.56
CLDND1-228ENST00000513873 TRIM35Q9UPQ4 493 aa11.54□□□□□ -0.56
CLDND1-228ENST00000513873 SPNS2Q8IVW8 549 aa11.52□□□□□ -0.57
CLDND1-228ENST00000513873 TMEM121BQ9BXQ6 578 aaPredicted RBP11.51□□□□□ -0.57
CLDND1-228ENST00000513873 SNPHO15079 494 aa11.49□□□□□ -0.57
CLDND1-228ENST00000513873 PLCG2P16885 1265 aa11.49□□□□□ -0.57
CLDND1-228ENST00000513873 SGIP1Q9BQI5 828 aa11.49□□□□□ -0.57
CLDND1-228ENST00000513873 MIER1Q8N108 512 aa11.46□□□□□ -0.57
CLDND1-228ENST00000513873 PCDHB13Q9Y5F0 798 aa11.46□□□□□ -0.57
CLDND1-228ENST00000513873 RASEFQ8IZ41 740 aa11.44□□□□□ -0.58
CLDND1-228ENST00000513873 TMEM106CQ9BVX2 250 aa11.38□□□□□ -0.59
CLDND1-228ENST00000513873 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.37□□□□□ -0.59
CLDND1-228ENST00000513873 MARVELD3Q96A59 401 aa11.34□□□□□ -0.59
CLDND1-228ENST00000513873 ZBTB47Q9UFB7 747 aaPredicted RBP11.34□□□□□ -0.59
CLDND1-228ENST00000513873 PLCD3Q8N3E9 789 aa11.31□□□□□ -0.6
CLDND1-228ENST00000513873 OCEL1Q9H607 264 aa11.31□□□□□ -0.6
CLDND1-228ENST00000513873 VASPP50552 380 aaPredicted RBP11.3□□□□□ -0.6
CLDND1-228ENST00000513873 IFNL1Q8IU54 200 aa11.3□□□□□ -0.6
CLDND1-228ENST00000513873 IRX5P78411 483 aaPredicted RBP11.29□□□□□ -0.6
CLDND1-228ENST00000513873 EMP3P54852 163 aa11.28□□□□□ -0.6
CLDND1-228ENST00000513873 FAM212AQ96EL1 285 aa11.26□□□□□ -0.61
CLDND1-228ENST00000513873 C3orf67Q6ZVT6 689 aa11.21□□□□□ -0.61
CLDND1-228ENST00000513873 KLHL34Q8N239 644 aa11.21□□□□□ -0.61
CLDND1-228ENST00000513873 NUBP1P53384 320 aa11.16□□□□□ -0.62
CLDND1-228ENST00000513873 HS3ST6Q96QI5 342 aa11.16□□□□□ -0.62
CLDND1-228ENST00000513873 FAM205CA6NFA0 338 aa11.15□□□□□ -0.62
CLDND1-228ENST00000513873 L3MBTL3Q96JM7 780 aaPredicted RBP11.14□□□□□ -0.63
CLDND1-228ENST00000513873 GOLGA2Q08379 1002 aa11.12□□□□□ -0.63
CLDND1-228ENST00000513873 KRTAP3-3Q9BYR6 98 aa11.11□□□□□ -0.63
CLDND1-228ENST00000513873 KRTAP3-2Q9BYR7 98 aa11.11□□□□□ -0.63
CLDND1-228ENST00000513873 IFNLR1Q8IU57 520 aaPredicted RBP11.09□□□□□ -0.63
CLDND1-228ENST00000513873 MKRN3Q13064 507 aaKnown RBP11.06□□□□□ -0.64
CLDND1-228ENST00000513873 DCAF8Q5TAQ9 597 aa11.06□□□□□ -0.64
CLDND1-228ENST00000513873 SPOCK2Q92563 424 aa11.06□□□□□ -0.64
CLDND1-228ENST00000513873 PYGBP11216 843 aa11.03□□□□□ -0.64
CLDND1-228ENST00000513873 POTEB3A0JP26 581 aa11□□□□□ -0.65
CLDND1-228ENST00000513873 POTEBQ6S5H4 581 aa11□□□□□ -0.65
CLDND1-228ENST00000513873 RNF166Q96A37 237 aaPredicted RBP11□□□□□ -0.65
CLDND1-228ENST00000513873 PCDHB8Q9UN66 801 aa11□□□□□ -0.65
CLDND1-228ENST00000513873 PDCD7Q8N8D1 485 aaKnown RBP10.99□□□□□ -0.65
CLDND1-228ENST00000513873 G3V3G9 751 aa10.98□□□□□ -0.65
CLDND1-228ENST00000513873 ZNF710Q8N1W2 664 aa10.97□□□□□ -0.65
CLDND1-228ENST00000513873 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLDND1-228ENST00000513873 AMER1Q5JTC6 1135 aaPredicted RBP10.96□□□□□ -0.65
CLDND1-228ENST00000513873 ERBB3P21860 1342 aa10.94□□□□□ -0.66
CLDND1-228ENST00000513873 ZNF467Q7Z7K2 595 aaPredicted RBP10.94□□□□□ -0.66
CLDND1-228ENST00000513873 CIZ1Q9ULV3 898 aaPredicted RBP10.92□□□□□ -0.66
CLDND1-228ENST00000513873 MYT1LQ9UL68 1186 aa10.91□□□□□ -0.66
CLDND1-228ENST00000513873 GSE1Q14687 1217 aa10.9□□□□□ -0.66
CLDND1-228ENST00000513873 DOK7Q18PE1 504 aa10.88□□□□□ -0.67
CLDND1-228ENST00000513873 RIMBP2O15034 1052 aa10.87□□□□□ -0.67
CLDND1-228ENST00000513873 HOXB1P14653 301 aaPredicted RBP10.87□□□□□ -0.67
CLDND1-228ENST00000513873 PTGER2P43116 358 aa10.83□□□□□ -0.68
CLDND1-228ENST00000513873 BOLA1Q9Y3E2 137 aa10.82□□□□□ -0.68
CLDND1-228ENST00000513873 HOXB3P14651 431 aaPredicted RBP10.81□□□□□ -0.68
CLDND1-228ENST00000513873 PSEN1P49768 467 aa10.81□□□□□ -0.68
CLDND1-228ENST00000513873 RTN4Q9NQC3 1192 aaKnown RBP10.81□□□□□ -0.68
CLDND1-228ENST00000513873 VARS2Q5ST30 1063 aaKnown RBP10.8□□□□□ -0.68
CLDND1-228ENST00000513873 TRIM41Q8WV44 630 aa10.8□□□□□ -0.68
CLDND1-228ENST00000513873 ECM2O94769 699 aaPredicted RBP10.76□□□□□ -0.69
CLDND1-228ENST00000513873 DPY19L2Q6NUT2 758 aa10.73□□□□□ -0.69
CLDND1-228ENST00000513873 ILDR1Q86SU0 546 aaPredicted RBP10.73□□□□□ -0.69
CLDND1-228ENST00000513873 CHRM1P11229 460 aaPredicted RBP10.72□□□□□ -0.69
CLDND1-228ENST00000513873 PDAP1Q13442 181 aaKnown RBP10.72□□□□□ -0.69
CLDND1-228ENST00000513873 PKD2Q13563 968 aa10.72□□□□□ -0.69
CLDND1-228ENST00000513873 ZNF687Q8N1G0 1237 aa10.72□□□□□ -0.69
CLDND1-228ENST00000513873 ZSWIM6Q9HCJ5 1215 aa10.7□□□□□ -0.7
CLDND1-228ENST00000513873 CABP2Q9NPB3 220 aa10.68□□□□□ -0.7
CLDND1-228ENST00000513873 DCAF8L2P0C7V8 631 aa10.67□□□□□ -0.7
CLDND1-228ENST00000513873 ANKRD13DQ6ZTN6 518 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms