RNA–Protein interactions for RNA: ENST00000513341.5

PDLIM5-218, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-218ENST00000513341 PROM2Q8N271 834 aa11.92□□□□□ -0.5
PDLIM5-218ENST00000513341 MS4A3Q96HJ5 214 aa11.91□□□□□ -0.5
PDLIM5-218ENST00000513341 METRNQ9UJH8 293 aa11.9□□□□□ -0.5
PDLIM5-218ENST00000513341 POTEGQ6S5H5 508 aa11.89□□□□□ -0.51
PDLIM5-218ENST00000513341 PCDH10Q9P2E7 1040 aa11.89□□□□□ -0.51
PDLIM5-218ENST00000513341 MAMSTRQ6ZN01 415 aa11.88□□□□□ -0.51
PDLIM5-218ENST00000513341 CCDC61Q9Y6R9 512 aa11.84□□□□□ -0.51
PDLIM5-218ENST00000513341 POTEJP0CG39 1038 aa11.82□□□□□ -0.52
PDLIM5-218ENST00000513341 EHMT2Q96KQ7 1210 aa11.82□□□□□ -0.52
PDLIM5-218ENST00000513341 KIF12Q96FN5 646 aa11.78□□□□□ -0.52
PDLIM5-218ENST00000513341 ATN1P54259 1190 aaPredicted RBP11.76□□□□□ -0.53
PDLIM5-218ENST00000513341 TSPYL2Q9H2G4 693 aaPredicted RBP11.76□□□□□ -0.53
PDLIM5-218ENST00000513341 SCUBE2Q9NQ36 999 aa11.74□□□□□ -0.53
PDLIM5-218ENST00000513341 TIE1P35590 1138 aa11.72□□□□□ -0.53
PDLIM5-218ENST00000513341 BMP2KQ9NSY1 1161 aaPredicted RBP11.7□□□□□ -0.54
PDLIM5-218ENST00000513341 LCE2DQ5TA82 110 aaPredicted RBP11.69□□□□□ -0.54
PDLIM5-218ENST00000513341 POTEFA5A3E0 1075 aa11.68□□□□□ -0.54
PDLIM5-218ENST00000513341 PLEKHG5O94827 1062 aa11.68□□□□□ -0.54
PDLIM5-218ENST00000513341 MAP3K13O43283 966 aa11.65□□□□□ -0.54
PDLIM5-218ENST00000513341 SGIP1Q9BQI5 828 aa11.64□□□□□ -0.55
PDLIM5-218ENST00000513341 TRPC6Q9Y210 931 aa11.62□□□□□ -0.55
PDLIM5-218ENST00000513341 RASEFQ8IZ41 740 aa11.61□□□□□ -0.55
PDLIM5-218ENST00000513341 IER5LQ5T953 404 aa11.6□□□□□ -0.55
PDLIM5-218ENST00000513341 MIER1Q8N108 512 aa11.6□□□□□ -0.55
PDLIM5-218ENST00000513341 FAM163AQ96GL9 167 aaPredicted RBP11.6□□□□□ -0.55
PDLIM5-218ENST00000513341 TTLL13PA6NNM8 815 aa11.58□□□□□ -0.56
PDLIM5-218ENST00000513341 COLQQ9Y215 455 aaPredicted RBP11.54□□□□□ -0.56
PDLIM5-218ENST00000513341 SEC24BO95487 1268 aa11.53□□□□□ -0.56
PDLIM5-218ENST00000513341 ZBTB47Q9UFB7 747 aaPredicted RBP11.52□□□□□ -0.57
PDLIM5-218ENST00000513341 TRIM35Q9UPQ4 493 aa11.49□□□□□ -0.57
PDLIM5-218ENST00000513341 PCDHB13Q9Y5F0 798 aa11.48□□□□□ -0.57
PDLIM5-218ENST00000513341 NUBP1P53384 320 aa11.47□□□□□ -0.57
PDLIM5-218ENST00000513341 PLCD3Q8N3E9 789 aa11.46□□□□□ -0.57
PDLIM5-218ENST00000513341 IFNL1Q8IU54 200 aa11.41□□□□□ -0.58
PDLIM5-218ENST00000513341 CDAN1Q8IWY9 1227 aa11.4□□□□□ -0.58
PDLIM5-218ENST00000513341 FAM212AQ96EL1 285 aa11.39□□□□□ -0.59
PDLIM5-218ENST00000513341 SLAIN1Q8ND83 568 aa11.37□□□□□ -0.59
PDLIM5-218ENST00000513341 TMEM106CQ9BVX2 250 aa11.37□□□□□ -0.59
PDLIM5-218ENST00000513341 IRX5P78411 483 aaPredicted RBP11.36□□□□□ -0.59
PDLIM5-218ENST00000513341 ST18O60284 1047 aa11.35□□□□□ -0.59
PDLIM5-218ENST00000513341 PLCG2P16885 1265 aa11.35□□□□□ -0.59
PDLIM5-218ENST00000513341 TMEM121BQ9BXQ6 578 aaPredicted RBP11.31□□□□□ -0.6
PDLIM5-218ENST00000513341 OCEL1Q9H607 264 aa11.29□□□□□ -0.6
PDLIM5-218ENST00000513341 SNPHO15079 494 aa11.26□□□□□ -0.61
PDLIM5-218ENST00000513341 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.2□□□□□ -0.62
PDLIM5-218ENST00000513341 DCAF8Q5TAQ9 597 aa11.19□□□□□ -0.62
PDLIM5-218ENST00000513341 PYGBP11216 843 aa11.17□□□□□ -0.62
PDLIM5-218ENST00000513341 SPNS2Q8IVW8 549 aa11.16□□□□□ -0.62
PDLIM5-218ENST00000513341 MMRN1Q13201 1228 aa11.15□□□□□ -0.62
PDLIM5-218ENST00000513341 FKBP8Q14318 412 aa11.13□□□□□ -0.63
PDLIM5-218ENST00000513341 FBXO3Q9UK99 471 aa11.13□□□□□ -0.63
PDLIM5-218ENST00000513341 PCDHB8Q9UN66 801 aa11.13□□□□□ -0.63
PDLIM5-218ENST00000513341 ZNF467Q7Z7K2 595 aaPredicted RBP11.12□□□□□ -0.63
PDLIM5-218ENST00000513341 PDCD7Q8N8D1 485 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-218ENST00000513341 CHRM1P11229 460 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-218ENST00000513341 L3MBTL3Q96JM7 780 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-218ENST00000513341 GSE1Q14687 1217 aa11.09□□□□□ -0.63
PDLIM5-218ENST00000513341 C3orf67Q6ZVT6 689 aa11.05□□□□□ -0.64
PDLIM5-218ENST00000513341 ILDR1Q86SU0 546 aaPredicted RBP11.05□□□□□ -0.64
PDLIM5-218ENST00000513341 MKRN3Q13064 507 aaKnown RBP11.04□□□□□ -0.64
PDLIM5-218ENST00000513341 MARVELD3Q96A59 401 aa11.04□□□□□ -0.64
PDLIM5-218ENST00000513341 GOLGA2Q08379 1002 aa11.02□□□□□ -0.65
PDLIM5-218ENST00000513341 EMP3P54852 163 aa10.99□□□□□ -0.65
PDLIM5-218ENST00000513341 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.98□□□□□ -0.651e-9■■■■□ 22.1
PDLIM5-218ENST00000513341 PSEN1P49768 467 aa10.97□□□□□ -0.65
PDLIM5-218ENST00000513341 KRTAP3-3Q9BYR6 98 aa10.96□□□□□ -0.65
PDLIM5-218ENST00000513341 KRTAP3-2Q9BYR7 98 aa10.96□□□□□ -0.65
PDLIM5-218ENST00000513341 VASPP50552 380 aaPredicted RBP10.95□□□□□ -0.66
PDLIM5-218ENST00000513341 HS3ST6Q96QI5 342 aa10.94□□□□□ -0.66
PDLIM5-218ENST00000513341 KLHL34Q8N239 644 aa10.93□□□□□ -0.66
PDLIM5-218ENST00000513341 POTEB3A0JP26 581 aa10.92□□□□□ -0.66
PDLIM5-218ENST00000513341 PDAP1Q13442 181 aaKnown RBP10.92□□□□□ -0.66
PDLIM5-218ENST00000513341 POTEBQ6S5H4 581 aa10.92□□□□□ -0.66
PDLIM5-218ENST00000513341 FAM205CA6NFA0 338 aa10.89□□□□□ -0.67
PDLIM5-218ENST00000513341 HOXB3P14651 431 aaPredicted RBP10.86□□□□□ -0.67
PDLIM5-218ENST00000513341 BOLA1Q9Y3E2 137 aa10.86□□□□□ -0.67
PDLIM5-218ENST00000513341 DPY19L2Q6NUT2 758 aa10.84□□□□□ -0.67
PDLIM5-218ENST00000513341 HOXB1P14653 301 aaPredicted RBP10.83□□□□□ -0.68
PDLIM5-218ENST00000513341 G3V3G9 751 aa10.82□□□□□ -0.68
PDLIM5-218ENST00000513341 CABP2Q9NPB3 220 aa10.8□□□□□ -0.68
PDLIM5-218ENST00000513341 DOK7Q18PE1 504 aa10.79□□□□□ -0.68
PDLIM5-218ENST00000513341 SPOCK2Q92563 424 aa10.78□□□□□ -0.68
PDLIM5-218ENST00000513341 ZNF710Q8N1W2 664 aa10.76□□□□□ -0.69
PDLIM5-218ENST00000513341 RIMBP2O15034 1052 aa10.73□□□□□ -0.69
PDLIM5-218ENST00000513341 TRIM41Q8WV44 630 aa10.72□□□□□ -0.69
PDLIM5-218ENST00000513341 ZSWIM6Q9HCJ5 1215 aa10.72□□□□□ -0.69
PDLIM5-218ENST00000513341 ERBB3P21860 1342 aa10.72□□□□□ -0.69
PDLIM5-218ENST00000513341 IFNLR1Q8IU57 520 aaPredicted RBP10.71□□□□□ -0.69
PDLIM5-218ENST00000513341 CIZ1Q9ULV3 898 aaPredicted RBP10.7□□□□□ -0.7
PDLIM5-218ENST00000513341 RNF166Q96A37 237 aaPredicted RBP10.66□□□□□ -0.7
PDLIM5-218ENST00000513341 ZNF687Q8N1G0 1237 aa10.65□□□□□ -0.7
PDLIM5-218ENST00000513341 EFCAB3Q8N7B9 438 aa10.64□□□□□ -0.71
PDLIM5-218ENST00000513341 PTGER2P43116 358 aa10.63□□□□□ -0.71
PDLIM5-218ENST00000513341 VARS2Q5ST30 1063 aaKnown RBP10.63□□□□□ -0.71
PDLIM5-218ENST00000513341 MICALL2Q8IY33 904 aa10.63□□□□□ -0.71
PDLIM5-218ENST00000513341 SOX12O15370 315 aa10.62□□□□□ -0.71
PDLIM5-218ENST00000513341 GPR153Q6NV75 609 aa10.61□□□□□ -0.71
PDLIM5-218ENST00000513341 MYT1LQ9UL68 1186 aa10.61□□□□□ -0.71
PDLIM5-218ENST00000513341 TMEM92Q6UXU6 159 aa10.6□□□□□ -0.71
PDLIM5-218ENST00000513341 MS4A4AQ96JQ5 239 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms