RNA–Protein interactions for RNA: ENST00000512258.1

MSH3-202, Transcript of mutS homolog 3, humanhuman

TSL 3

Gene MSH3, Length 677 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-202ENST00000512258 PROM2Q8N271 834 aa13.86□□□□□ -0.19
MSH3-202ENST00000512258 METRNQ9UJH8 293 aa13.84□□□□□ -0.19
MSH3-202ENST00000512258 POTEMA6NI47 508 aa13.83□□□□□ -0.2
MSH3-202ENST00000512258 POTEGQ6S5H5 508 aa13.79□□□□□ -0.2
MSH3-202ENST00000512258 C7P10643 843 aa13.78□□□□□ -0.2
MSH3-202ENST00000512258 SLC39A7Q92504 469 aa13.78□□□□□ -0.2
MSH3-202ENST00000512258 CCDC61Q9Y6R9 512 aa13.78□□□□□ -0.2
MSH3-202ENST00000512258 TSPYL2Q9H2G4 693 aaPredicted RBP13.75□□□□□ -0.21
MSH3-202ENST00000512258 ATN1P54259 1190 aaPredicted RBP13.73□□□□□ -0.21
MSH3-202ENST00000512258 LCE2DQ5TA82 110 aaPredicted RBP13.72□□□□□ -0.21
MSH3-202ENST00000512258 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
MSH3-202ENST00000512258 POTEFA5A3E0 1075 aa13.7□□□□□ -0.22
MSH3-202ENST00000512258 TRPC6Q9Y210 931 aa13.7□□□□□ -0.22
MSH3-202ENST00000512258 BMP2KQ9NSY1 1161 aaPredicted RBP13.66□□□□□ -0.22
MSH3-202ENST00000512258 MAMSTRQ6ZN01 415 aa13.63□□□□□ -0.23
MSH3-202ENST00000512258 MAP3K13O43283 966 aa13.6□□□□□ -0.23
MSH3-202ENST00000512258 RASEFQ8IZ41 740 aa13.6□□□□□ -0.23
MSH3-202ENST00000512258 PCDH10Q9P2E7 1040 aa13.57□□□□□ -0.24
MSH3-202ENST00000512258 TIE1P35590 1138 aa13.55□□□□□ -0.24
MSH3-202ENST00000512258 SCUBE2Q9NQ36 999 aa13.54□□□□□ -0.24
MSH3-202ENST00000512258 FAM163AQ96GL9 167 aaPredicted RBP13.52□□□□□ -0.25
MSH3-202ENST00000512258 COLQQ9Y215 455 aaPredicted RBP13.51□□□□□ -0.25
MSH3-202ENST00000512258 TTLL13PA6NNM8 815 aa13.5□□□□□ -0.25
MSH3-202ENST00000512258 MIER1Q8N108 512 aa13.49□□□□□ -0.25
MSH3-202ENST00000512258 PLEKHG5O94827 1062 aa13.4□□□□□ -0.26
MSH3-202ENST00000512258 NUBP1P53384 320 aa13.39□□□□□ -0.27
MSH3-202ENST00000512258 SGIP1Q9BQI5 828 aa13.39□□□□□ -0.27
MSH3-202ENST00000512258 TRIM35Q9UPQ4 493 aa13.39□□□□□ -0.27
MSH3-202ENST00000512258 SEC24BO95487 1268 aa13.36□□□□□ -0.27
MSH3-202ENST00000512258 IER5LQ5T953 404 aa13.36□□□□□ -0.27
MSH3-202ENST00000512258 PCDHB13Q9Y5F0 798 aa13.35□□□□□ -0.27
MSH3-202ENST00000512258 IFNL1Q8IU54 200 aa13.33□□□□□ -0.28
MSH3-202ENST00000512258 PLCD3Q8N3E9 789 aa13.32□□□□□ -0.28
MSH3-202ENST00000512258 CDAN1Q8IWY9 1227 aa13.25□□□□□ -0.29
MSH3-202ENST00000512258 TMEM106CQ9BVX2 250 aa13.24□□□□□ -0.29
MSH3-202ENST00000512258 ST18O60284 1047 aa13.22□□□□□ -0.29
MSH3-202ENST00000512258 IRX5P78411 483 aaPredicted RBP13.22□□□□□ -0.29
MSH3-202ENST00000512258 SLAIN1Q8ND83 568 aa13.22□□□□□ -0.29
MSH3-202ENST00000512258 ZBTB47Q9UFB7 747 aaPredicted RBP13.21□□□□□ -0.29
MSH3-202ENST00000512258 FAM212AQ96EL1 285 aa13.18□□□□□ -0.3
MSH3-202ENST00000512258 PLCG2P16885 1265 aa13.15□□□□□ -0.3
MSH3-202ENST00000512258 OCEL1Q9H607 264 aa13.08□□□□□ -0.32
MSH3-202ENST00000512258 PYGBP11216 843 aa13.07□□□□□ -0.32
MSH3-202ENST00000512258 FKBP8Q14318 412 aa13.05□□□□□ -0.32
MSH3-202ENST00000512258 PCDHB8Q9UN66 801 aa13.04□□□□□ -0.32
MSH3-202ENST00000512258 DCAF8Q5TAQ9 597 aa13.02□□□□□ -0.33
MSH3-202ENST00000512258 TMEM121BQ9BXQ6 578 aaPredicted RBP13□□□□□ -0.33
MSH3-202ENST00000512258 PDCD7Q8N8D1 485 aaKnown RBP12.98□□□□□ -0.33
MSH3-202ENST00000512258 SPNS2Q8IVW8 549 aa12.97□□□□□ -0.33
MSH3-202ENST00000512258 MMRN1Q13201 1228 aa12.96□□□□□ -0.33
MSH3-202ENST00000512258 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.96□□□□□ -0.33
MSH3-202ENST00000512258 MARVELD3Q96A59 401 aa12.94□□□□□ -0.34
MSH3-202ENST00000512258 SNPHO15079 494 aa12.92□□□□□ -0.34
MSH3-202ENST00000512258 POTEB3A0JP26 581 aa12.85□□□□□ -0.35
MSH3-202ENST00000512258 POTEBQ6S5H4 581 aa12.85□□□□□ -0.35
MSH3-202ENST00000512258 ZNF467Q7Z7K2 595 aaPredicted RBP12.83□□□□□ -0.36
MSH3-202ENST00000512258 ILDR1Q86SU0 546 aaPredicted RBP12.83□□□□□ -0.36
MSH3-202ENST00000512258 CHRM1P11229 460 aaPredicted RBP12.82□□□□□ -0.36
MSH3-202ENST00000512258 FBXO3Q9UK99 471 aa12.82□□□□□ -0.36
MSH3-202ENST00000512258 GSE1Q14687 1217 aa12.8□□□□□ -0.36
MSH3-202ENST00000512258 KRTAP3-3Q9BYR6 98 aa12.8□□□□□ -0.36
MSH3-202ENST00000512258 KRTAP3-2Q9BYR7 98 aa12.8□□□□□ -0.36
MSH3-202ENST00000512258 MKRN3Q13064 507 aaKnown RBP12.79□□□□□ -0.36
MSH3-202ENST00000512258 C3orf67Q6ZVT6 689 aa12.79□□□□□ -0.36
MSH3-202ENST00000512258 L3MBTL3Q96JM7 780 aaPredicted RBP12.79□□□□□ -0.36
MSH3-202ENST00000512258 PSEN1P49768 467 aa12.78□□□□□ -0.36
MSH3-202ENST00000512258 VASPP50552 380 aaPredicted RBP12.78□□□□□ -0.36
MSH3-202ENST00000512258 EMP3P54852 163 aa12.77□□□□□ -0.37
MSH3-202ENST00000512258 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.77□□□□□ -0.37
MSH3-202ENST00000512258 HS3ST6Q96QI5 342 aa12.75□□□□□ -0.37
MSH3-202ENST00000512258 GOLGA2Q08379 1002 aa12.73□□□□□ -0.37
MSH3-202ENST00000512258 DPY19L2Q6NUT2 758 aa12.73□□□□□ -0.37
MSH3-202ENST00000512258 KLHL34Q8N239 644 aa12.72□□□□□ -0.37
MSH3-202ENST00000512258 FAM205CA6NFA0 338 aa12.7□□□□□ -0.38
MSH3-202ENST00000512258 HOXB3P14651 431 aaPredicted RBP12.68□□□□□ -0.38
MSH3-202ENST00000512258 PDAP1Q13442 181 aaKnown RBP12.66□□□□□ -0.38
MSH3-202ENST00000512258 CABP2Q9NPB3 220 aa12.61□□□□□ -0.39
MSH3-202ENST00000512258 BOLA1Q9Y3E2 137 aa12.61□□□□□ -0.39
MSH3-202ENST00000512258 HOXB1P14653 301 aaPredicted RBP12.56□□□□□ -0.4
MSH3-202ENST00000512258 IFNLR1Q8IU57 520 aaPredicted RBP12.56□□□□□ -0.4
MSH3-202ENST00000512258 SPOCK2Q92563 424 aa12.51□□□□□ -0.41
MSH3-202ENST00000512258 CIZ1Q9ULV3 898 aaPredicted RBP12.49□□□□□ -0.41
MSH3-202ENST00000512258 G3V3G9 751 aa12.46□□□□□ -0.41
MSH3-202ENST00000512258 TMEM92Q6UXU6 159 aa12.46□□□□□ -0.41
MSH3-202ENST00000512258 DOK7Q18PE1 504 aa12.45□□□□□ -0.42
MSH3-202ENST00000512258 ZNF710Q8N1W2 664 aa12.45□□□□□ -0.42
MSH3-202ENST00000512258 EFCAB3Q8N7B9 438 aa12.45□□□□□ -0.42
MSH3-202ENST00000512258 ERBB3P21860 1342 aa12.43□□□□□ -0.42
MSH3-202ENST00000512258 VARS2Q5ST30 1063 aaKnown RBP12.38□□□□□ -0.43
MSH3-202ENST00000512258 MICALL2Q8IY33 904 aa12.38□□□□□ -0.43
MSH3-202ENST00000512258 RNF166Q96A37 237 aaPredicted RBP12.37□□□□□ -0.43
MSH3-202ENST00000512258 GPR153Q6NV75 609 aa12.35□□□□□ -0.43
MSH3-202ENST00000512258 MS4A4AQ96JQ5 239 aa12.35□□□□□ -0.43
MSH3-202ENST00000512258 RIMBP2O15034 1052 aa12.33□□□□□ -0.44
MSH3-202ENST00000512258 ZNF687Q8N1G0 1237 aa12.33□□□□□ -0.44
MSH3-202ENST00000512258 ZSWIM6Q9HCJ5 1215 aa12.33□□□□□ -0.44
MSH3-202ENST00000512258 TRIM41Q8WV44 630 aa12.29□□□□□ -0.44
MSH3-202ENST00000512258 RNF25Q96BH1 459 aaPredicted RBP12.29□□□□□ -0.44
MSH3-202ENST00000512258 MYT1LQ9UL68 1186 aa12.29□□□□□ -0.44
MSH3-202ENST00000512258 SOX12O15370 315 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms