RNA–Protein interactions for RNA: ENST00000506779.1

TOPBP1-205, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 536 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-205ENST00000506779 PAK3O75914 559 aaPredicted RBP12.15□□□□□ -0.46
TOPBP1-205ENST00000506779 CDAN1Q8IWY9 1227 aa12.14□□□□□ -0.47
TOPBP1-205ENST00000506779 SCUBE2Q9NQ36 999 aa12.13□□□□□ -0.47
TOPBP1-205ENST00000506779 ATMINO43313 823 aaPredicted RBP12.12□□□□□ -0.47
TOPBP1-205ENST00000506779 MS4A3Q96HJ5 214 aa12.03□□□□□ -0.48
TOPBP1-205ENST00000506779 STAG3Q9UJ98 1225 aa11.96□□□□□ -0.49
TOPBP1-205ENST00000506779 MMRN1Q13201 1228 aa11.94□□□□□ -0.5
TOPBP1-205ENST00000506779 POTEFA5A3E0 1075 aa11.93□□□□□ -0.5
TOPBP1-205ENST00000506779 ATN1P54259 1190 aaPredicted RBP11.93□□□□□ -0.5
TOPBP1-205ENST00000506779 NPM1P06748 294 aaKnown RBP eCLIP11.92□□□□□ -0.5
TOPBP1-205ENST00000506779 SPNS2Q8IVW8 549 aa11.87□□□□□ -0.51
TOPBP1-205ENST00000506779 MNX1P50219 401 aaPredicted RBP11.86□□□□□ -0.51
TOPBP1-205ENST00000506779 ST18O60284 1047 aa11.81□□□□□ -0.52
TOPBP1-205ENST00000506779 BMP2KQ9NSY1 1161 aaPredicted RBP11.78□□□□□ -0.52
TOPBP1-205ENST00000506779 COLQQ9Y215 455 aaPredicted RBP11.75□□□□□ -0.53
TOPBP1-205ENST00000506779 SEC24BO95487 1268 aa11.71□□□□□ -0.53
TOPBP1-205ENST00000506779 TRPC6Q9Y210 931 aa11.71□□□□□ -0.53
TOPBP1-205ENST00000506779 TSPYL2Q9H2G4 693 aaPredicted RBP11.7□□□□□ -0.54
TOPBP1-205ENST00000506779 SLAIN1Q8ND83 568 aa11.69□□□□□ -0.54
TOPBP1-205ENST00000506779 KIF12Q96FN5 646 aa11.69□□□□□ -0.54
TOPBP1-205ENST00000506779 CCDC61Q9Y6R9 512 aa11.68□□□□□ -0.54
TOPBP1-205ENST00000506779 TIE1P35590 1138 aa11.66□□□□□ -0.54
TOPBP1-205ENST00000506779 TMEM121BQ9BXQ6 578 aaPredicted RBP11.6□□□□□ -0.55
TOPBP1-205ENST00000506779 TTLL13PA6NNM8 815 aa11.58□□□□□ -0.56
TOPBP1-205ENST00000506779 MAP3K13O43283 966 aa11.56□□□□□ -0.56
TOPBP1-205ENST00000506779 IER5LQ5T953 404 aa11.56□□□□□ -0.56
TOPBP1-205ENST00000506779 MARVELD3Q96A59 401 aa11.53□□□□□ -0.56
TOPBP1-205ENST00000506779 TRIM35Q9UPQ4 493 aa11.51□□□□□ -0.57
TOPBP1-205ENST00000506779 SPDYE4A6NLX3 237 aa11.5□□□□□ -0.57
TOPBP1-205ENST00000506779 SNPHO15079 494 aa11.45□□□□□ -0.58
TOPBP1-205ENST00000506779 KRTAP3-3Q9BYR6 98 aa11.41□□□□□ -0.58
TOPBP1-205ENST00000506779 KRTAP3-2Q9BYR7 98 aa11.41□□□□□ -0.58
TOPBP1-205ENST00000506779 PLCG2P16885 1265 aa11.39□□□□□ -0.59
TOPBP1-205ENST00000506779 EMP3P54852 163 aa11.34□□□□□ -0.59
TOPBP1-205ENST00000506779 RASEFQ8IZ41 740 aa11.33□□□□□ -0.6
TOPBP1-205ENST00000506779 POTEB3A0JP26 581 aa11.32□□□□□ -0.6
TOPBP1-205ENST00000506779 POTEBQ6S5H4 581 aa11.32□□□□□ -0.6
TOPBP1-205ENST00000506779 SGIP1Q9BQI5 828 aa11.32□□□□□ -0.6
TOPBP1-205ENST00000506779 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
TOPBP1-205ENST00000506779 HS3ST6Q96QI5 342 aa11.3□□□□□ -0.6
TOPBP1-205ENST00000506779 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.3□□□□□ -0.6
TOPBP1-205ENST00000506779 PCDHB13Q9Y5F0 798 aa11.3□□□□□ -0.6
TOPBP1-205ENST00000506779 TMEM106CQ9BVX2 250 aa11.27□□□□□ -0.61
TOPBP1-205ENST00000506779 FAM205CA6NFA0 338 aa11.26□□□□□ -0.61
TOPBP1-205ENST00000506779 OCEL1Q9H607 264 aa11.24□□□□□ -0.61
TOPBP1-205ENST00000506779 IFNL1Q8IU54 200 aa11.22□□□□□ -0.61
TOPBP1-205ENST00000506779 RNF166Q96A37 237 aaPredicted RBP11.16□□□□□ -0.62
TOPBP1-205ENST00000506779 PLEKHG5O94827 1062 aa11.13□□□□□ -0.63
TOPBP1-205ENST00000506779 MIER1Q8N108 512 aa11.1□□□□□ -0.63
TOPBP1-205ENST00000506779 C3orf67Q6ZVT6 689 aa11.07□□□□□ -0.64
TOPBP1-205ENST00000506779 PROM2Q8N271 834 aa11.07□□□□□ -0.64
TOPBP1-205ENST00000506779 MYT1LQ9UL68 1186 aa11.02□□□□□ -0.65
TOPBP1-205ENST00000506779 NUBP1P53384 320 aa10.99□□□□□ -0.65
TOPBP1-205ENST00000506779 PDCD7Q8N8D1 485 aaKnown RBP10.99□□□□□ -0.65
TOPBP1-205ENST00000506779 L3MBTL3Q96JM7 780 aaPredicted RBP10.98□□□□□ -0.65
TOPBP1-205ENST00000506779 ERBB3P21860 1342 aa10.92□□□□□ -0.66
TOPBP1-205ENST00000506779 HOXB3P14651 431 aaPredicted RBP10.91□□□□□ -0.66
TOPBP1-205ENST00000506779 FAM212AQ96EL1 285 aa10.91□□□□□ -0.66
TOPBP1-205ENST00000506779 HOXB1P14653 301 aaPredicted RBP10.9□□□□□ -0.66
TOPBP1-205ENST00000506779 PLCD3Q8N3E9 789 aa10.88□□□□□ -0.67
TOPBP1-205ENST00000506779 CSRNP3Q8WYN3 585 aa10.88□□□□□ -0.67
TOPBP1-205ENST00000506779 ZBTB47Q9UFB7 747 aaPredicted RBP10.85□□□□□ -0.67
TOPBP1-205ENST00000506779 PCDHB8Q9UN66 801 aa10.85□□□□□ -0.67
TOPBP1-205ENST00000506779 ZNF710Q8N1W2 664 aa10.84□□□□□ -0.67
TOPBP1-205ENST00000506779 VARS2Q5ST30 1063 aaKnown RBP10.82□□□□□ -0.68
TOPBP1-205ENST00000506779 PTGER2P43116 358 aa10.81□□□□□ -0.68
TOPBP1-205ENST00000506779 MKRN3Q13064 507 aaKnown RBP10.81□□□□□ -0.68
TOPBP1-205ENST00000506779 PYGBP11216 843 aa10.8□□□□□ -0.68
TOPBP1-205ENST00000506779 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.8□□□□□ -0.68
TOPBP1-205ENST00000506779 GOLGA2Q08379 1002 aa10.78□□□□□ -0.68
TOPBP1-205ENST00000506779 DOK7Q18PE1 504 aa10.76□□□□□ -0.69
TOPBP1-205ENST00000506779 ZNF687Q8N1G0 1237 aa10.76□□□□□ -0.69
TOPBP1-205ENST00000506779 PLA2G2EQ9NZK7 142 aa10.73□□□□□ -0.69
TOPBP1-205ENST00000506779 DCAF8Q5TAQ9 597 aa10.71□□□□□ -0.69
TOPBP1-205ENST00000506779 DPY19L2Q6NUT2 758 aa10.71□□□□□ -0.69
TOPBP1-205ENST00000506779 ILDR1Q86SU0 546 aaPredicted RBP10.7□□□□□ -0.7
TOPBP1-205ENST00000506779 ANKRD13DQ6ZTN6 518 aa10.68□□□□□ -0.7
TOPBP1-205ENST00000506779 RIMBP2O15034 1052 aa10.67□□□□□ -0.7
TOPBP1-205ENST00000506779 BOLA1Q9Y3E2 137 aa10.66□□□□□ -0.7
TOPBP1-205ENST00000506779 G3V3G9 751 aa10.65□□□□□ -0.7
TOPBP1-205ENST00000506779 ZNF467Q7Z7K2 595 aaPredicted RBP10.61□□□□□ -0.71
TOPBP1-205ENST00000506779 ZSWIM6Q9HCJ5 1215 aa10.59□□□□□ -0.71
TOPBP1-205ENST00000506779 PSEN1P49768 467 aa10.57□□□□□ -0.72
TOPBP1-205ENST00000506779 GPR153Q6NV75 609 aa10.56□□□□□ -0.72
TOPBP1-205ENST00000506779 LSM11P83369 360 aaKnown RBP eCLIP10.55□□□□□ -0.72
TOPBP1-205ENST00000506779 HCSTQ9UBK5 93 aa10.55□□□□□ -0.72
TOPBP1-205ENST00000506779 CABP2Q9NPB3 220 aa10.44□□□□□ -0.74
TOPBP1-205ENST00000506779 ZNF316A6NFI3 1004 aaPredicted RBP10.43□□□□□ -0.74
TOPBP1-205ENST00000506779 CHRM1P11229 460 aaPredicted RBP10.43□□□□□ -0.74
TOPBP1-205ENST00000506779 ARSIQ5FYB1 569 aa10.43□□□□□ -0.74
TOPBP1-205ENST00000506779 TMEM92Q6UXU6 159 aa10.43□□□□□ -0.74
TOPBP1-205ENST00000506779 IRX2Q9BZI1 471 aaPredicted RBP10.42□□□□□ -0.74
TOPBP1-205ENST00000506779 PDAP1Q13442 181 aaKnown RBP10.41□□□□□ -0.74
TOPBP1-205ENST00000506779 GSE1Q14687 1217 aa10.39□□□□□ -0.75
TOPBP1-205ENST00000506779 PBX2P40425 430 aa10.37□□□□□ -0.75
TOPBP1-205ENST00000506779 KHSRPQ92945 711 aaKnown RBP eCLIP10.36□□□□□ -0.75
TOPBP1-205ENST00000506779 RGS20O76081 388 aa10.35□□□□□ -0.75
TOPBP1-205ENST00000506779 POTEEQ6S8J3 1075 aa10.34□□□□□ -0.75
TOPBP1-205ENST00000506779 MICALL2Q8IY33 904 aa10.32□□□□□ -0.76
TOPBP1-205ENST00000506779 AXIN2Q9Y2T1 843 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms