RNA–Protein interactions for RNA: ENST00000505625.5

MATR3-211, Transcript of matrin 3, humanhuman

TSL 1 (best)

Gene MATR3, Length 7,306 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-211ENST00000505625 FBXO3Q9UK99 471 aa7.09□□□□□ -1.27
MATR3-211ENST00000505625 SOX12O15370 315 aa7.09□□□□□ -1.27
MATR3-211ENST00000505625 DIEXFQ68CQ4 756 aaKnown RBP7.07□□□□□ -1.28
MATR3-211ENST00000505625 PPP1R1BQ9UD71 204 aaPredicted RBP7.07□□□□□ -1.28
MATR3-211ENST00000505625 ZNF330Q9Y3S2 320 aaPredicted RBP7.07□□□□□ -1.28
MATR3-211ENST00000505625 FKBP8Q14318 412 aa7.07□□□□□ -1.28
MATR3-211ENST00000505625 CFAP44Q96MT7 982 aa7.06□□□□□ -1.28
MATR3-211ENST00000505625 CNKSR2Q8WXI2 1034 aa7.05□□□□□ -1.28
MATR3-211ENST00000505625 KDM2AQ9Y2K7 1162 aa7.05□□□□□ -1.28
MATR3-211ENST00000505625 CHMP7Q8WUX9 453 aaPredicted RBP7.04□□□□□ -1.28
MATR3-211ENST00000505625 PDE4CQ08493 712 aa7.03□□□□□ -1.28
MATR3-211ENST00000505625 NAP1L2Q9ULW6 460 aaPredicted RBP7.03□□□□□ -1.28
MATR3-211ENST00000505625 LAS1LQ9Y4W2 734 aaKnown RBP7.02□□□□□ -1.29
MATR3-211ENST00000505625 TMC1Q8TDI8 760 aa7.02□□□□□ -1.29
MATR3-211ENST00000505625 ERCC6Q03468 1493 aa7.01□□□□□ -1.29
MATR3-211ENST00000505625 ZEB1P37275 1124 aaPredicted RBP7.01□□□□□ -1.29
MATR3-211ENST00000505625 CWC22Q9HCG8 908 aaKnown RBP7.01□□□□□ -1.29
MATR3-211ENST00000505625 PAK3O75914 559 aaPredicted RBP7.01□□□□□ -1.29
MATR3-211ENST00000505625 WDR70Q9NW82 654 aa7□□□□□ -1.29
MATR3-211ENST00000505625 NEUROD2Q15784 382 aa6.98□□□□□ -1.29
MATR3-211ENST00000505625 SCRIBQ14160 1630 aa6.98□□□□□ -1.29
MATR3-211ENST00000505625 CSB-PGBD3P0DP91 1061 aa6.97□□□□□ -1.29
MATR3-211ENST00000505625 WWC1Q8IX03 1113 aa6.96□□□□□ -1.29
MATR3-211ENST00000505625 CHIC2Q9UKJ5 165 aa6.96□□□□□ -1.3
MATR3-211ENST00000505625 FBXW7Q969H0 707 aa6.95□□□□□ -1.3
MATR3-211ENST00000505625 ANP32CO43423 234 aa6.95□□□□□ -1.3
MATR3-211ENST00000505625 MYH16Q9H6N6 1097 aa6.95□□□□□ -1.3
MATR3-211ENST00000505625 ANP32BQ92688 251 aaKnown RBP6.95□□□□□ -1.3
MATR3-211ENST00000505625 LOC105371045A0A1W2PR82 267 aa6.93□□□□□ -1.3
MATR3-211ENST00000505625 VPS53Q5VIR6 699 aa6.93□□□□□ -1.3
MATR3-211ENST00000505625 OS9Q13438 667 aaPredicted RBP6.93□□□□□ -1.3
MATR3-211ENST00000505625 SF3B2Q13435 895 aaKnown RBP6.92□□□□□ -1.3
MATR3-211ENST00000505625 RAD21O60216 631 aa6.91□□□□□ -1.3
MATR3-211ENST00000505625 SENP3-EIF4A1A0A087X0R7 540 aa6.91□□□□□ -1.3
MATR3-211ENST00000505625 SAMD1Q6SPF0 538 aaPredicted RBP6.91□□□□□ -1.3
MATR3-211ENST00000505625 POGKQ9P215 609 aa6.91□□□□□ -1.3
MATR3-211ENST00000505625 WDR43Q15061 677 aaKnown RBP eCLIP6.91□□□□□ -1.37e-6■■□□□ 14
MATR3-211ENST00000505625 PAXIP1Q6ZW49 1069 aaPredicted RBP6.91□□□□□ -1.3
MATR3-211ENST00000505625 TNNT2P45379 298 aaPredicted RBP6.9□□□□□ -1.3
MATR3-211ENST00000505625 EVA1CP58658 441 aa6.9□□□□□ -1.31
MATR3-211ENST00000505625 PIP4K2BP78356 416 aa6.89□□□□□ -1.31
MATR3-211ENST00000505625 SAFB2Q14151 953 aaKnown RBP eCLIP6.89□□□□□ -1.31
MATR3-211ENST00000505625 ZRSR1Q15695 479 aaKnown RBP6.89□□□□□ -1.31
MATR3-211ENST00000505625 RGL3Q3MIN7 710 aa6.88□□□□□ -1.31
MATR3-211ENST00000505625 FGD1P98174 961 aa6.87□□□□□ -1.31
MATR3-211ENST00000505625 UPF2Q9HAU5 1272 aaKnown RBP6.87□□□□□ -1.31
MATR3-211ENST00000505625 FOXD1Q16676 465 aa6.86□□□□□ -1.31
MATR3-211ENST00000505625 CHMP3Q9Y3E7 222 aa6.86□□□□□ -1.31
MATR3-211ENST00000505625 GTF2E1P29083 439 aaPredicted RBP6.86□□□□□ -1.31
MATR3-211ENST00000505625 VSIG10Q8N0Z9 540 aa6.86□□□□□ -1.31
MATR3-211ENST00000505625 SYTL4Q96C24 671 aaPredicted RBP6.86□□□□□ -1.31
MATR3-211ENST00000505625 CTDP1Q9Y5B0 961 aaPredicted RBP6.86□□□□□ -1.31
MATR3-211ENST00000505625 PPM1FP49593 454 aaPredicted RBP6.86□□□□□ -1.31
MATR3-211ENST00000505625 EIF4G2P78344 907 aaKnown RBP eCLIP6.86□□□□□ -1.31
MATR3-211ENST00000505625 FAM9BQ8IZU0 186 aa6.85□□□□□ -1.31
MATR3-211ENST00000505625 FRAT2O75474 233 aaPredicted RBP6.84□□□□□ -1.31
MATR3-211ENST00000505625 IBSPP21815 317 aaPredicted RBP6.84□□□□□ -1.31
MATR3-211ENST00000505625 STK26Q9P289 416 aa6.84□□□□□ -1.31
MATR3-211ENST00000505625 TRIM34Q9BYJ4 488 aa6.83□□□□□ -1.32
MATR3-211ENST00000505625 SRPK2P78362 688 aaKnown RBP6.82□□□□□ -1.32
MATR3-211ENST00000505625 PLCD3Q8N3E9 789 aa6.82□□□□□ -1.32
MATR3-211ENST00000505625 NCLP19338 710 aaKnown RBP6.82□□□□□ -1.32
MATR3-211ENST00000505625 KCNJ4P48050 445 aa6.82□□□□□ -1.32
MATR3-211ENST00000505625 TSPY4P0CV99 314 aa6.82□□□□□ -1.32
MATR3-211ENST00000505625 TSPY10P0CW01 314 aa6.82□□□□□ -1.32
MATR3-211ENST00000505625 NUTM2BA6NNL0 878 aaPredicted RBP6.82□□□□□ -1.32
MATR3-211ENST00000505625 NUTM2EB1AL46 878 aaPredicted RBP6.82□□□□□ -1.32
MATR3-211ENST00000505625 NUTM2AQ8IVF1 878 aaPredicted RBP6.82□□□□□ -1.32
MATR3-211ENST00000505625 NUTM2FA1L443 756 aa6.81□□□□□ -1.32
MATR3-211ENST00000505625 TAF7LQ5H9L4 462 aa6.81□□□□□ -1.32
MATR3-211ENST00000505625 CCAR1Q8IX12 1150 aaKnown RBP6.81□□□□□ -1.32
MATR3-211ENST00000505625 GRM1Q13255 1194 aa6.81□□□□□ -1.32
MATR3-211ENST00000505625 TCEAL9Q9UHQ7 104 aa6.81□□□□□ -1.32
MATR3-211ENST00000505625 GNL2Q13823 731 aaKnown RBP6.8□□□□□ -1.32
MATR3-211ENST00000505625 ERICH6BQ5W0A0 696 aa6.8□□□□□ -1.32
MATR3-211ENST00000505625 TRIM44Q96DX7 344 aaPredicted RBP6.8□□□□□ -1.32
MATR3-211ENST00000505625 MYCNP04198 464 aaPredicted RBP6.79□□□□□ -1.32
MATR3-211ENST00000505625 SPDYE4A6NLX3 237 aa6.79□□□□□ -1.32
MATR3-211ENST00000505625 PLCB2Q00722 1185 aa6.78□□□□□ -1.32
MATR3-211ENST00000505625 U2SURPO15042 1029 aaKnown RBP6.78□□□□□ -1.32
MATR3-211ENST00000505625 LTV1Q96GA3 475 aaPredicted RBP6.78□□□□□ -1.32
MATR3-211ENST00000505625 CREBRFQ8IUR6 639 aa6.77□□□□□ -1.33
MATR3-211ENST00000505625 ANP32AP39687 249 aaKnown RBP6.77□□□□□ -1.33
MATR3-211ENST00000505625 NUTM2DQ5VT03 806 aaPredicted RBP6.77□□□□□ -1.33
MATR3-211ENST00000505625 CASC1Q6TDU7 716 aa6.77□□□□□ -1.33
MATR3-211ENST00000505625 NOC3LQ8WTT2 800 aaKnown RBP6.77□□□□□ -1.33
MATR3-211ENST00000505625 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.76□□□□□ -1.33
MATR3-211ENST00000505625 SLC4A3P48751 1232 aa6.76□□□□□ -1.33
MATR3-211ENST00000505625 EIF5BO60841 1220 aaKnown RBP6.76□□□□□ -1.33
MATR3-211ENST00000505625 SPRYD3Q8NCJ5 442 aa6.76□□□□□ -1.33
MATR3-211ENST00000505625 GGT6Q6P531 493 aa6.76□□□□□ -1.33
MATR3-211ENST00000505625 GORABQ5T7V8 394 aa6.75□□□□□ -1.33
MATR3-211ENST00000505625 MARCH6O60337 910 aa6.75□□□□□ -1.33
MATR3-211ENST00000505625 FTSJ3Q8IY81 847 aaKnown RBP6.74□□□□□ -1.33
MATR3-211ENST00000505625 NGEFQ8N5V2 710 aa6.74□□□□□ -1.33
MATR3-211ENST00000505625 HDGFP51858 240 aaKnown RBP6.74□□□□□ -1.33
MATR3-211ENST00000505625 CYB5RLQ6IPT4 315 aa6.73□□□□□ -1.33
MATR3-211ENST00000505625 RTF1Q92541 710 aaKnown RBP6.73□□□□□ -1.33
MATR3-211ENST00000505625 APBB1O00213 710 aa6.73□□□□□ -1.33
MATR3-211ENST00000505625 C16orf71Q8IYS4 520 aaPredicted RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms