RNA–Protein interactions for RNA: ENST00000502706.1

RFC1-204, Transcript of replication factor C subunit 1, humanhuman

TSL 5

Gene RFC1, Length 690 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-204ENST00000502706 ATMINO43313 823 aaPredicted RBP13.92□□□□□ -0.18
RFC1-204ENST00000502706 SLC39A7Q92504 469 aa13.92□□□□□ -0.18
RFC1-204ENST00000502706 C7P10643 843 aa13.91□□□□□ -0.18
RFC1-204ENST00000502706 POTEGQ6S5H5 508 aa13.87□□□□□ -0.19
RFC1-204ENST00000502706 PROM2Q8N271 834 aa13.85□□□□□ -0.19
RFC1-204ENST00000502706 MAMSTRQ6ZN01 415 aa13.84□□□□□ -0.19
RFC1-204ENST00000502706 TSPYL2Q9H2G4 693 aaPredicted RBP13.84□□□□□ -0.19
RFC1-204ENST00000502706 SLC24A1O60721 1099 aa13.83□□□□□ -0.2
RFC1-204ENST00000502706 POTEJP0CG39 1038 aa13.81□□□□□ -0.2
RFC1-204ENST00000502706 CCDC61Q9Y6R9 512 aa13.81□□□□□ -0.2
RFC1-204ENST00000502706 PCDH10Q9P2E7 1040 aa13.77□□□□□ -0.21
RFC1-204ENST00000502706 ATN1P54259 1190 aaPredicted RBP13.76□□□□□ -0.21
RFC1-204ENST00000502706 KIF12Q96FN5 646 aa13.76□□□□□ -0.21
RFC1-204ENST00000502706 SCUBE2Q9NQ36 999 aa13.73□□□□□ -0.21
RFC1-204ENST00000502706 PLEKHG5O94827 1062 aa13.7□□□□□ -0.22
RFC1-204ENST00000502706 BMP2KQ9NSY1 1161 aaPredicted RBP13.69□□□□□ -0.22
RFC1-204ENST00000502706 TIE1P35590 1138 aa13.66□□□□□ -0.22
RFC1-204ENST00000502706 MAP3K13O43283 966 aa13.64□□□□□ -0.23
RFC1-204ENST00000502706 POTEFA5A3E0 1075 aa13.63□□□□□ -0.23
RFC1-204ENST00000502706 LCE2DQ5TA82 110 aaPredicted RBP13.63□□□□□ -0.23
RFC1-204ENST00000502706 MIER1Q8N108 512 aa13.63□□□□□ -0.23
RFC1-204ENST00000502706 FAM163AQ96GL9 167 aaPredicted RBP13.63□□□□□ -0.23
RFC1-204ENST00000502706 TRPC6Q9Y210 931 aa13.63□□□□□ -0.23
RFC1-204ENST00000502706 RASEFQ8IZ41 740 aa13.61□□□□□ -0.23
RFC1-204ENST00000502706 TTLL13PA6NNM8 815 aa13.56□□□□□ -0.24
RFC1-204ENST00000502706 SEC24BO95487 1268 aa13.54□□□□□ -0.24
RFC1-204ENST00000502706 SGIP1Q9BQI5 828 aa13.52□□□□□ -0.25
RFC1-204ENST00000502706 COLQQ9Y215 455 aaPredicted RBP13.51□□□□□ -0.25
RFC1-204ENST00000502706 IER5LQ5T953 404 aa13.5□□□□□ -0.25
RFC1-204ENST00000502706 PLCD3Q8N3E9 789 aa13.48□□□□□ -0.25
RFC1-204ENST00000502706 TRIM35Q9UPQ4 493 aa13.47□□□□□ -0.25
RFC1-204ENST00000502706 ZBTB47Q9UFB7 747 aaPredicted RBP13.46□□□□□ -0.25
RFC1-204ENST00000502706 PCDHB13Q9Y5F0 798 aa13.46□□□□□ -0.25
RFC1-204ENST00000502706 NUBP1P53384 320 aa13.4□□□□□ -0.26
RFC1-204ENST00000502706 AMER1Q5JTC6 1135 aaPredicted RBP13.37□□□□□ -0.27
RFC1-204ENST00000502706 IFNL1Q8IU54 200 aa13.36□□□□□ -0.27
RFC1-204ENST00000502706 FAM212AQ96EL1 285 aa13.35□□□□□ -0.27
RFC1-204ENST00000502706 CDAN1Q8IWY9 1227 aa13.34□□□□□ -0.27
RFC1-204ENST00000502706 TMEM106CQ9BVX2 250 aa13.34□□□□□ -0.27
RFC1-204ENST00000502706 SLAIN1Q8ND83 568 aa13.33□□□□□ -0.28
RFC1-204ENST00000502706 RTN4Q9NQC3 1192 aaKnown RBP13.33□□□□□ -0.28
RFC1-204ENST00000502706 PLCG2P16885 1265 aa13.31□□□□□ -0.28
RFC1-204ENST00000502706 ST18O60284 1047 aa13.27□□□□□ -0.29
RFC1-204ENST00000502706 IRX5P78411 483 aaPredicted RBP13.25□□□□□ -0.29
RFC1-204ENST00000502706 OCEL1Q9H607 264 aa13.19□□□□□ -0.3
RFC1-204ENST00000502706 TMEM121BQ9BXQ6 578 aaPredicted RBP13.16□□□□□ -0.3
RFC1-204ENST00000502706 DCAF8Q5TAQ9 597 aa13.15□□□□□ -0.3
RFC1-204ENST00000502706 SNPHO15079 494 aa13.13□□□□□ -0.31
RFC1-204ENST00000502706 PYGBP11216 843 aa13.13□□□□□ -0.31
RFC1-204ENST00000502706 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.12□□□□□ -0.31
RFC1-204ENST00000502706 FKBP8Q14318 412 aa13.11□□□□□ -0.31
RFC1-204ENST00000502706 PCDHB8Q9UN66 801 aa13.09□□□□□ -0.31
RFC1-204ENST00000502706 MMRN1Q13201 1228 aa13.03□□□□□ -0.32
RFC1-204ENST00000502706 SPNS2Q8IVW8 549 aa13.03□□□□□ -0.32
RFC1-204ENST00000502706 FBXO3Q9UK99 471 aa13.02□□□□□ -0.33
RFC1-204ENST00000502706 PDCD7Q8N8D1 485 aaKnown RBP13□□□□□ -0.33
RFC1-204ENST00000502706 ZNF467Q7Z7K2 595 aaPredicted RBP12.99□□□□□ -0.33
RFC1-204ENST00000502706 MARVELD3Q96A59 401 aa12.99□□□□□ -0.33
RFC1-204ENST00000502706 C3orf67Q6ZVT6 689 aa12.97□□□□□ -0.33
RFC1-204ENST00000502706 GOLGA2Q08379 1002 aa12.96□□□□□ -0.33
RFC1-204ENST00000502706 GSE1Q14687 1217 aa12.96□□□□□ -0.33
RFC1-204ENST00000502706 L3MBTL3Q96JM7 780 aaPredicted RBP12.96□□□□□ -0.33
RFC1-204ENST00000502706 MKRN3Q13064 507 aaKnown RBP12.95□□□□□ -0.34
RFC1-204ENST00000502706 CHRM1P11229 460 aaPredicted RBP12.9□□□□□ -0.34
RFC1-204ENST00000502706 EMP3P54852 163 aa12.9□□□□□ -0.34
RFC1-204ENST00000502706 KLHL34Q8N239 644 aa12.89□□□□□ -0.35
RFC1-204ENST00000502706 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.89□□□□□ -0.352e-10■■■□□ 19.1
RFC1-204ENST00000502706 PSEN1P49768 467 aa12.86□□□□□ -0.35
RFC1-204ENST00000502706 VASPP50552 380 aaPredicted RBP12.84□□□□□ -0.35
RFC1-204ENST00000502706 ILDR1Q86SU0 546 aaPredicted RBP12.81□□□□□ -0.36
RFC1-204ENST00000502706 HS3ST6Q96QI5 342 aa12.81□□□□□ -0.36
RFC1-204ENST00000502706 FAM205CA6NFA0 338 aa12.79□□□□□ -0.36
RFC1-204ENST00000502706 KRTAP3-3Q9BYR6 98 aa12.79□□□□□ -0.36
RFC1-204ENST00000502706 KRTAP3-2Q9BYR7 98 aa12.79□□□□□ -0.36
RFC1-204ENST00000502706 PDAP1Q13442 181 aaKnown RBP12.78□□□□□ -0.36
RFC1-204ENST00000502706 POTEB3A0JP26 581 aa12.77□□□□□ -0.37
RFC1-204ENST00000502706 POTEBQ6S5H4 581 aa12.77□□□□□ -0.37
RFC1-204ENST00000502706 G3V3G9 751 aa12.72□□□□□ -0.37
RFC1-204ENST00000502706 DPY19L2Q6NUT2 758 aa12.72□□□□□ -0.37
RFC1-204ENST00000502706 BOLA1Q9Y3E2 137 aa12.71□□□□□ -0.37
RFC1-204ENST00000502706 CABP2Q9NPB3 220 aa12.7□□□□□ -0.38
RFC1-204ENST00000502706 HOXB3P14651 431 aaPredicted RBP12.68□□□□□ -0.38
RFC1-204ENST00000502706 HOXB1P14653 301 aaPredicted RBP12.64□□□□□ -0.39
RFC1-204ENST00000502706 ZNF710Q8N1W2 664 aa12.64□□□□□ -0.39
RFC1-204ENST00000502706 SPOCK2Q92563 424 aa12.64□□□□□ -0.39
RFC1-204ENST00000502706 CIZ1Q9ULV3 898 aaPredicted RBP12.62□□□□□ -0.39
RFC1-204ENST00000502706 DOK7Q18PE1 504 aa12.61□□□□□ -0.39
RFC1-204ENST00000502706 ERBB3P21860 1342 aa12.58□□□□□ -0.4
RFC1-204ENST00000502706 RIMBP2O15034 1052 aa12.56□□□□□ -0.4
RFC1-204ENST00000502706 IFNLR1Q8IU57 520 aaPredicted RBP12.56□□□□□ -0.4
RFC1-204ENST00000502706 EFCAB3Q8N7B9 438 aa12.49□□□□□ -0.41
RFC1-204ENST00000502706 RNF166Q96A37 237 aaPredicted RBP12.49□□□□□ -0.41
RFC1-204ENST00000502706 VARS2Q5ST30 1063 aaKnown RBP12.48□□□□□ -0.41
RFC1-204ENST00000502706 TRIM41Q8WV44 630 aa12.48□□□□□ -0.41
RFC1-204ENST00000502706 ZSWIM6Q9HCJ5 1215 aa12.47□□□□□ -0.41
RFC1-204ENST00000502706 MICALL2Q8IY33 904 aa12.44□□□□□ -0.42
RFC1-204ENST00000502706 MYT1LQ9UL68 1186 aa12.42□□□□□ -0.42
RFC1-204ENST00000502706 TMEM92Q6UXU6 159 aa12.41□□□□□ -0.42
RFC1-204ENST00000502706 ZNF687Q8N1G0 1237 aa12.41□□□□□ -0.42
RFC1-204ENST00000502706 SOX12O15370 315 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms