RNA–Protein interactions for RNA: ENST00000498280.1

RBM39-242, Transcript of RNA binding motif protein 39, humanhuman

TSL 3

Gene RBM39, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-242ENST00000498280 MS4A3Q96HJ5 214 aa9.72□□□□□ -0.85
RBM39-242ENST00000498280 ASTLQ6HA08 431 aaPredicted RBP9.69□□□□□ -0.86
RBM39-242ENST00000498280 ATMINO43313 823 aaPredicted RBP9.68□□□□□ -0.86
RBM39-242ENST00000498280 C7P10643 843 aa9.66□□□□□ -0.86
RBM39-242ENST00000498280 SLC39A7Q92504 469 aa9.66□□□□□ -0.86
RBM39-242ENST00000498280 LCE2DQ5TA82 110 aaPredicted RBP9.63□□□□□ -0.87
RBM39-242ENST00000498280 PCDH10Q9P2E7 1040 aa9.62□□□□□ -0.87
RBM39-242ENST00000498280 MAMSTRQ6ZN01 415 aa9.6□□□□□ -0.87
RBM39-242ENST00000498280 FAM163AQ96GL9 167 aaPredicted RBP9.6□□□□□ -0.87
RBM39-242ENST00000498280 TSPYL2Q9H2G4 693 aaPredicted RBP9.6□□□□□ -0.87
RBM39-242ENST00000498280 ATN1P54259 1190 aaPredicted RBP9.59□□□□□ -0.87
RBM39-242ENST00000498280 PROM2Q8N271 834 aa9.57□□□□□ -0.88
RBM39-242ENST00000498280 PLEKHG5O94827 1062 aa9.56□□□□□ -0.88
RBM39-242ENST00000498280 SCUBE2Q9NQ36 999 aa9.56□□□□□ -0.88
RBM39-242ENST00000498280 CCDC61Q9Y6R9 512 aa9.55□□□□□ -0.88
RBM39-242ENST00000498280 POTEFA5A3E0 1075 aa9.53□□□□□ -0.88
RBM39-242ENST00000498280 TRPC6Q9Y210 931 aa9.53□□□□□ -0.88
RBM39-242ENST00000498280 BMP2KQ9NSY1 1161 aaPredicted RBP9.52□□□□□ -0.89
RBM39-242ENST00000498280 KIF12Q96FN5 646 aa9.51□□□□□ -0.89
RBM39-242ENST00000498280 MAP3K13O43283 966 aa9.45□□□□□ -0.9
RBM39-242ENST00000498280 COLQQ9Y215 455 aaPredicted RBP9.44□□□□□ -0.9
RBM39-242ENST00000498280 MIER1Q8N108 512 aa9.43□□□□□ -0.9
RBM39-242ENST00000498280 TIE1P35590 1138 aa9.42□□□□□ -0.9
RBM39-242ENST00000498280 SEC24BO95487 1268 aa9.4□□□□□ -0.9
RBM39-242ENST00000498280 CDAN1Q8IWY9 1227 aa9.4□□□□□ -0.9
RBM39-242ENST00000498280 RASEFQ8IZ41 740 aa9.4□□□□□ -0.9
RBM39-242ENST00000498280 TTLL13PA6NNM8 815 aa9.39□□□□□ -0.91
RBM39-242ENST00000498280 ZBTB47Q9UFB7 747 aaPredicted RBP9.38□□□□□ -0.91
RBM39-242ENST00000498280 PLCD3Q8N3E9 789 aa9.37□□□□□ -0.91
RBM39-242ENST00000498280 TRIM35Q9UPQ4 493 aa9.34□□□□□ -0.91
RBM39-242ENST00000498280 SGIP1Q9BQI5 828 aa9.33□□□□□ -0.92
RBM39-242ENST00000498280 PCDHB13Q9Y5F0 798 aa9.31□□□□□ -0.92
RBM39-242ENST00000498280 ST18O60284 1047 aa9.3□□□□□ -0.92
RBM39-242ENST00000498280 FKBP8Q14318 412 aa9.3□□□□□ -0.92
RBM39-242ENST00000498280 IER5LQ5T953 404 aa9.3□□□□□ -0.92
RBM39-242ENST00000498280 SLAIN1Q8ND83 568 aa9.3□□□□□ -0.92
RBM39-242ENST00000498280 FAM212AQ96EL1 285 aa9.28□□□□□ -0.92
RBM39-242ENST00000498280 IFNL1Q8IU54 200 aa9.25□□□□□ -0.93
RBM39-242ENST00000498280 NUBP1P53384 320 aa9.24□□□□□ -0.93
RBM39-242ENST00000498280 PLCG2P16885 1265 aa9.22□□□□□ -0.93
RBM39-242ENST00000498280 TMEM106CQ9BVX2 250 aa9.22□□□□□ -0.93
RBM39-242ENST00000498280 MMRN1Q13201 1228 aa9.19□□□□□ -0.94
RBM39-242ENST00000498280 IRX5P78411 483 aaPredicted RBP9.17□□□□□ -0.94
RBM39-242ENST00000498280 SPNS2Q8IVW8 549 aa9.17□□□□□ -0.94
RBM39-242ENST00000498280 MARVELD3Q96A59 401 aa9.14□□□□□ -0.95
RBM39-242ENST00000498280 TMEM121BQ9BXQ6 578 aaPredicted RBP9.12□□□□□ -0.95
RBM39-242ENST00000498280 DCAF8Q5TAQ9 597 aa9.11□□□□□ -0.95
RBM39-242ENST00000498280 FBXO3Q9UK99 471 aa9.11□□□□□ -0.95
RBM39-242ENST00000498280 OCEL1Q9H607 264 aa9.1□□□□□ -0.95
RBM39-242ENST00000498280 PYGBP11216 843 aa9.09□□□□□ -0.95
RBM39-242ENST00000498280 SNPHO15079 494 aa9.08□□□□□ -0.96
RBM39-242ENST00000498280 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.08□□□□□ -0.96
RBM39-242ENST00000498280 PCDHB8Q9UN66 801 aa9.04□□□□□ -0.96
RBM39-242ENST00000498280 ZNF467Q7Z7K2 595 aaPredicted RBP9.03□□□□□ -0.96
RBM39-242ENST00000498280 GOLGA2Q08379 1002 aa9.02□□□□□ -0.97
RBM39-242ENST00000498280 GSE1Q14687 1217 aa9.02□□□□□ -0.97
RBM39-242ENST00000498280 EMP3P54852 163 aa9.01□□□□□ -0.97
RBM39-242ENST00000498280 C3orf67Q6ZVT6 689 aa8.99□□□□□ -0.97
RBM39-242ENST00000498280 PDCD7Q8N8D1 485 aaKnown RBP8.99□□□□□ -0.97
RBM39-242ENST00000498280 POTEB3A0JP26 581 aa8.98□□□□□ -0.97
RBM39-242ENST00000498280 POTEBQ6S5H4 581 aa8.98□□□□□ -0.97
RBM39-242ENST00000498280 KLHL34Q8N239 644 aa8.98□□□□□ -0.97
RBM39-242ENST00000498280 MKRN3Q13064 507 aaKnown RBP8.97□□□□□ -0.97
RBM39-242ENST00000498280 KRTAP3-3Q9BYR6 98 aa8.97□□□□□ -0.97
RBM39-242ENST00000498280 KRTAP3-2Q9BYR7 98 aa8.97□□□□□ -0.97
RBM39-242ENST00000498280 VASPP50552 380 aaPredicted RBP8.96□□□□□ -0.98
RBM39-242ENST00000498280 HS3ST6Q96QI5 342 aa8.96□□□□□ -0.98
RBM39-242ENST00000498280 FAM205CA6NFA0 338 aa8.95□□□□□ -0.98
RBM39-242ENST00000498280 L3MBTL3Q96JM7 780 aaPredicted RBP8.94□□□□□ -0.98
RBM39-242ENST00000498280 CHRM1P11229 460 aaPredicted RBP8.9□□□□□ -0.98
RBM39-242ENST00000498280 PSEN1P49768 467 aa8.9□□□□□ -0.98
RBM39-242ENST00000498280 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.9□□□□□ -0.98
RBM39-242ENST00000498280 PDAP1Q13442 181 aaKnown RBP8.87□□□□□ -0.99
RBM39-242ENST00000498280 G3V3G9 751 aa8.86□□□□□ -0.99
RBM39-242ENST00000498280 IFNLR1Q8IU57 520 aaPredicted RBP8.86□□□□□ -0.99
RBM39-242ENST00000498280 DPY19L2Q6NUT2 758 aa8.83□□□□□ -1
RBM39-242ENST00000498280 HOXB3P14651 431 aaPredicted RBP8.82□□□□□ -1
RBM39-242ENST00000498280 SPOCK2Q92563 424 aa8.81□□□□□ -1
RBM39-242ENST00000498280 ILDR1Q86SU0 546 aaPredicted RBP8.8□□□□□ -1
RBM39-242ENST00000498280 CABP2Q9NPB3 220 aa8.8□□□□□ -1
RBM39-242ENST00000498280 CIZ1Q9ULV3 898 aaPredicted RBP8.8□□□□□ -1
RBM39-242ENST00000498280 BOLA1Q9Y3E2 137 aa8.78□□□□□ -1
RBM39-242ENST00000498280 ERBB3P21860 1342 aa8.76□□□□□ -1.01
RBM39-242ENST00000498280 HOXB1P14653 301 aaPredicted RBP8.75□□□□□ -1.01
RBM39-242ENST00000498280 ZNF710Q8N1W2 664 aa8.75□□□□□ -1.01
RBM39-242ENST00000498280 RNF166Q96A37 237 aaPredicted RBP8.74□□□□□ -1.01
RBM39-242ENST00000498280 DOK7Q18PE1 504 aa8.72□□□□□ -1.01
RBM39-242ENST00000498280 TRIM41Q8WV44 630 aa8.72□□□□□ -1.01
RBM39-242ENST00000498280 RIMBP2O15034 1052 aa8.71□□□□□ -1.02
RBM39-242ENST00000498280 VARS2Q5ST30 1063 aaKnown RBP8.7□□□□□ -1.02
RBM39-242ENST00000498280 MYT1LQ9UL68 1186 aa8.68□□□□□ -1.02
RBM39-242ENST00000498280 EFCAB3Q8N7B9 438 aa8.64□□□□□ -1.03
RBM39-242ENST00000498280 MICALL2Q8IY33 904 aa8.61□□□□□ -1.03
RBM39-242ENST00000498280 ZSWIM6Q9HCJ5 1215 aa8.61□□□□□ -1.03
RBM39-242ENST00000498280 TMEM92Q6UXU6 159 aa8.6□□□□□ -1.03
RBM39-242ENST00000498280 ZNF687Q8N1G0 1237 aa8.6□□□□□ -1.03
RBM39-242ENST00000498280 SOX12O15370 315 aa8.58□□□□□ -1.04
RBM39-242ENST00000498280 RNF25Q96BH1 459 aaPredicted RBP8.58□□□□□ -1.04
RBM39-242ENST00000498280 RIOK3O14730 519 aaKnown RBP8.57□□□□□ -1.04
RBM39-242ENST00000498280 GPR153Q6NV75 609 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms