RNA–Protein interactions for RNA: ENST00000497722.2

PSPC1-205, Transcript of paraspeckle component 1, humanhuman

TSL 2

Gene PSPC1, Length 448 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-205ENST00000497722 PELP1Q8IZL8 1130 aaKnown RBP11.23□□□□□ -0.61
PSPC1-205ENST00000497722 SLC39A7Q92504 469 aa11.22□□□□□ -0.61
PSPC1-205ENST00000497722 C7P10643 843 aa11.21□□□□□ -0.61
PSPC1-205ENST00000497722 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
PSPC1-205ENST00000497722 ATMINO43313 823 aaPredicted RBP11.15□□□□□ -0.62
PSPC1-205ENST00000497722 MS4A3Q96HJ5 214 aa11.15□□□□□ -0.62
PSPC1-205ENST00000497722 SCUBE2Q9NQ36 999 aa11.14□□□□□ -0.63
PSPC1-205ENST00000497722 MNX1P50219 401 aaPredicted RBP11.12□□□□□ -0.63
PSPC1-205ENST00000497722 POTEJP0CG39 1038 aa11.11□□□□□ -0.63
PSPC1-205ENST00000497722 LCE2DQ5TA82 110 aaPredicted RBP11.07□□□□□ -0.64
PSPC1-205ENST00000497722 FAM163AQ96GL9 167 aaPredicted RBP11.07□□□□□ -0.64
PSPC1-205ENST00000497722 FKBP8Q14318 412 aa11.06□□□□□ -0.64
PSPC1-205ENST00000497722 ATN1P54259 1190 aaPredicted RBP11□□□□□ -0.65
PSPC1-205ENST00000497722 TSPYL2Q9H2G4 693 aaPredicted RBP10.97□□□□□ -0.65
PSPC1-205ENST00000497722 CCDC61Q9Y6R9 512 aa10.95□□□□□ -0.66
PSPC1-205ENST00000497722 BMP2KQ9NSY1 1161 aaPredicted RBP10.92□□□□□ -0.66
PSPC1-205ENST00000497722 KIF12Q96FN5 646 aa10.91□□□□□ -0.66
PSPC1-205ENST00000497722 POTEFA5A3E0 1075 aa10.9□□□□□ -0.66
PSPC1-205ENST00000497722 TIE1P35590 1138 aa10.9□□□□□ -0.66
PSPC1-205ENST00000497722 CDAN1Q8IWY9 1227 aa10.89□□□□□ -0.67
PSPC1-205ENST00000497722 SEC24BO95487 1268 aa10.86□□□□□ -0.67
PSPC1-205ENST00000497722 TRPC6Q9Y210 931 aa10.83□□□□□ -0.68
PSPC1-205ENST00000497722 MAP3K13O43283 966 aa10.81□□□□□ -0.68
PSPC1-205ENST00000497722 IER5LQ5T953 404 aa10.8□□□□□ -0.68
PSPC1-205ENST00000497722 COLQQ9Y215 455 aaPredicted RBP10.8□□□□□ -0.68
PSPC1-205ENST00000497722 TTLL13PA6NNM8 815 aa10.79□□□□□ -0.68
PSPC1-205ENST00000497722 PLEKHG5O94827 1062 aa10.79□□□□□ -0.68
PSPC1-205ENST00000497722 MIER1Q8N108 512 aa10.77□□□□□ -0.69
PSPC1-205ENST00000497722 SLAIN1Q8ND83 568 aa10.74□□□□□ -0.69
PSPC1-205ENST00000497722 FBXO3Q9UK99 471 aa10.74□□□□□ -0.69
PSPC1-205ENST00000497722 TRIM35Q9UPQ4 493 aa10.74□□□□□ -0.69
PSPC1-205ENST00000497722 ST18O60284 1047 aa10.73□□□□□ -0.69
PSPC1-205ENST00000497722 RASEFQ8IZ41 740 aa10.71□□□□□ -0.69
PSPC1-205ENST00000497722 SGIP1Q9BQI5 828 aa10.71□□□□□ -0.69
PSPC1-205ENST00000497722 PLCD3Q8N3E9 789 aa10.7□□□□□ -0.7
PSPC1-205ENST00000497722 MMRN1Q13201 1228 aa10.67□□□□□ -0.7
PSPC1-205ENST00000497722 TMEM121BQ9BXQ6 578 aaPredicted RBP10.66□□□□□ -0.7
PSPC1-205ENST00000497722 PCDHB13Q9Y5F0 798 aa10.66□□□□□ -0.7
PSPC1-205ENST00000497722 PLCG2P16885 1265 aa10.65□□□□□ -0.7
PSPC1-205ENST00000497722 VASPP50552 380 aaPredicted RBP10.65□□□□□ -0.7
PSPC1-205ENST00000497722 NUBP1P53384 320 aa10.64□□□□□ -0.71
PSPC1-205ENST00000497722 SPNS2Q8IVW8 549 aa10.62□□□□□ -0.71
PSPC1-205ENST00000497722 ZBTB47Q9UFB7 747 aaPredicted RBP10.62□□□□□ -0.71
PSPC1-205ENST00000497722 SNPHO15079 494 aa10.59□□□□□ -0.71
PSPC1-205ENST00000497722 TMEM106CQ9BVX2 250 aa10.58□□□□□ -0.72
PSPC1-205ENST00000497722 IFNL1Q8IU54 200 aa10.56□□□□□ -0.72
PSPC1-205ENST00000497722 IRX5P78411 483 aaPredicted RBP10.54□□□□□ -0.72
PSPC1-205ENST00000497722 IFNLR1Q8IU57 520 aaPredicted RBP10.52□□□□□ -0.73
PSPC1-205ENST00000497722 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.51□□□□□ -0.73
PSPC1-205ENST00000497722 FAM212AQ96EL1 285 aa10.5□□□□□ -0.73
PSPC1-205ENST00000497722 OCEL1Q9H607 264 aa10.5□□□□□ -0.73
PSPC1-205ENST00000497722 MARVELD3Q96A59 401 aa10.49□□□□□ -0.73
PSPC1-205ENST00000497722 KLHL34Q8N239 644 aa10.44□□□□□ -0.74
PSPC1-205ENST00000497722 EMP3P54852 163 aa10.42□□□□□ -0.74
PSPC1-205ENST00000497722 DCAF8Q5TAQ9 597 aa10.39□□□□□ -0.75
PSPC1-205ENST00000497722 C3orf67Q6ZVT6 689 aa10.39□□□□□ -0.75
PSPC1-205ENST00000497722 SPOCK2Q92563 424 aa10.39□□□□□ -0.75
PSPC1-205ENST00000497722 GSE1Q14687 1217 aa10.35□□□□□ -0.75
PSPC1-205ENST00000497722 HS3ST6Q96QI5 342 aa10.34□□□□□ -0.75
PSPC1-205ENST00000497722 KRTAP3-3Q9BYR6 98 aa10.34□□□□□ -0.75
PSPC1-205ENST00000497722 KRTAP3-2Q9BYR7 98 aa10.34□□□□□ -0.75
PSPC1-205ENST00000497722 PYGBP11216 843 aa10.33□□□□□ -0.76
PSPC1-205ENST00000497722 CHRM1P11229 460 aaPredicted RBP10.32□□□□□ -0.76
PSPC1-205ENST00000497722 L3MBTL3Q96JM7 780 aaPredicted RBP10.32□□□□□ -0.76
PSPC1-205ENST00000497722 FAM205CA6NFA0 338 aa10.3□□□□□ -0.76
PSPC1-205ENST00000497722 PDCD7Q8N8D1 485 aaKnown RBP10.29□□□□□ -0.76
PSPC1-205ENST00000497722 GOLGA2Q08379 1002 aa10.28□□□□□ -0.76
PSPC1-205ENST00000497722 PCDHB8Q9UN66 801 aa10.27□□□□□ -0.77
PSPC1-205ENST00000497722 MKRN3Q13064 507 aaKnown RBP10.26□□□□□ -0.77
PSPC1-205ENST00000497722 POTEB3A0JP26 581 aa10.25□□□□□ -0.77
PSPC1-205ENST00000497722 POTEBQ6S5H4 581 aa10.25□□□□□ -0.77
PSPC1-205ENST00000497722 CIZ1Q9ULV3 898 aaPredicted RBP10.22□□□□□ -0.77
PSPC1-205ENST00000497722 ZNF467Q7Z7K2 595 aaPredicted RBP10.21□□□□□ -0.77
PSPC1-205ENST00000497722 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.19□□□□□ -0.78
PSPC1-205ENST00000497722 TRIM41Q8WV44 630 aa10.16□□□□□ -0.78
PSPC1-205ENST00000497722 RNF166Q96A37 237 aaPredicted RBP10.16□□□□□ -0.78
PSPC1-205ENST00000497722 G3V3G9 751 aa10.13□□□□□ -0.79
PSPC1-205ENST00000497722 ZNF710Q8N1W2 664 aa10.12□□□□□ -0.79
PSPC1-205ENST00000497722 HOXB1P14653 301 aaPredicted RBP10.11□□□□□ -0.79
PSPC1-205ENST00000497722 PSEN1P49768 467 aa10.11□□□□□ -0.79
PSPC1-205ENST00000497722 HOXB3P14651 431 aaPredicted RBP10.1□□□□□ -0.79
PSPC1-205ENST00000497722 RNF25Q96BH1 459 aaPredicted RBP10.1□□□□□ -0.79
PSPC1-205ENST00000497722 ERBB3P21860 1342 aa10.09□□□□□ -0.79
PSPC1-205ENST00000497722 PDAP1Q13442 181 aaKnown RBP10.09□□□□□ -0.79
PSPC1-205ENST00000497722 ILDR1Q86SU0 546 aaPredicted RBP10.09□□□□□ -0.79
PSPC1-205ENST00000497722 DOK7Q18PE1 504 aa10.08□□□□□ -0.8
PSPC1-205ENST00000497722 MYT1LQ9UL68 1186 aa10.07□□□□□ -0.8
PSPC1-205ENST00000497722 PKD2Q13563 968 aa10.06□□□□□ -0.8
PSPC1-205ENST00000497722 BOLA1Q9Y3E2 137 aa10.06□□□□□ -0.8
PSPC1-205ENST00000497722 RIMBP2O15034 1052 aa10.05□□□□□ -0.8
PSPC1-205ENST00000497722 RIOK3O14730 519 aaKnown RBP10.02□□□□□ -0.81
PSPC1-205ENST00000497722 PTGER2P43116 358 aa10.02□□□□□ -0.81
PSPC1-205ENST00000497722 DPY19L2Q6NUT2 758 aa10.02□□□□□ -0.81
PSPC1-205ENST00000497722 VARS2Q5ST30 1063 aaKnown RBP10.01□□□□□ -0.81
PSPC1-205ENST00000497722 CABP2Q9NPB3 220 aa9.97□□□□□ -0.81
PSPC1-205ENST00000497722 VGFO15240 615 aaPredicted RBP9.96□□□□□ -0.82
PSPC1-205ENST00000497722 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.95□□□□□ -0.82
PSPC1-205ENST00000497722 ECM2O94769 699 aaPredicted RBP9.95□□□□□ -0.82
PSPC1-205ENST00000497722 ZFP91Q96JP5 570 aaPredicted RBP9.95□□□□□ -0.82
PSPC1-205ENST00000497722 ZSWIM6Q9HCJ5 1215 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms