RNA–Protein interactions for RNA: ENST00000497269.5

MSH5-219, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-219ENST00000497269 PYGBP11216 843 aa13.72□□□□□ -0.21
MSH5-219ENST00000497269 RGL2O15211 777 aa13.71□□□□□ -0.21
MSH5-219ENST00000497269 PAK3O75914 559 aaPredicted RBP13.7□□□□□ -0.22
MSH5-219ENST00000497269 CD44P16070 742 aaKnown RBP13.69□□□□□ -0.22
MSH5-219ENST00000497269 ZRANB1Q9UGI0 708 aa13.65□□□□□ -0.22
MSH5-219ENST00000497269 TRIM41Q8WV44 630 aa13.64□□□□□ -0.23
MSH5-219ENST00000497269 HAX1O00165 279 aa13.6□□□□□ -0.23
MSH5-219ENST00000497269 CCDC61Q9Y6R9 512 aa13.6□□□□□ -0.23
MSH5-219ENST00000497269 RNF25Q96BH1 459 aaPredicted RBP13.59□□□□□ -0.23
MSH5-219ENST00000497269 C19orf67A6NJJ6 358 aa13.57□□□□□ -0.24
MSH5-219ENST00000497269 PHF12Q96QT6 1004 aa13.57□□□□□ -0.24
MSH5-219ENST00000497269 POTEHQ6S545 545 aa13.56□□□□□ -0.24
MSH5-219ENST00000497269 RIOK3O14730 519 aaKnown RBP13.51□□□□□ -0.25
MSH5-219ENST00000497269 CHRM1P11229 460 aaPredicted RBP13.51□□□□□ -0.25
MSH5-219ENST00000497269 PCDHB8Q9UN66 801 aa13.5□□□□□ -0.25
MSH5-219ENST00000497269 PCDHB13Q9Y5F0 798 aa13.5□□□□□ -0.25
MSH5-219ENST00000497269 MAP3K13O43283 966 aa13.49□□□□□ -0.25
MSH5-219ENST00000497269 EVX2Q03828 476 aa13.49□□□□□ -0.25
MSH5-219ENST00000497269 CHGAP10645 457 aaKnown RBP13.48□□□□□ -0.25
MSH5-219ENST00000497269 KIF12Q96FN5 646 aa13.47□□□□□ -0.25
MSH5-219ENST00000497269 ZNF579Q8NAF0 562 aaKnown RBP13.43□□□□□ -0.26
MSH5-219ENST00000497269 ZNF467Q7Z7K2 595 aaPredicted RBP13.42□□□□□ -0.26
MSH5-219ENST00000497269 IFNL1Q8IU54 200 aa13.42□□□□□ -0.26
MSH5-219ENST00000497269 VGFO15240 615 aaPredicted RBP13.41□□□□□ -0.26
MSH5-219ENST00000497269 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.4□□□□□ -0.26
MSH5-219ENST00000497269 ZFP91Q96JP5 570 aaPredicted RBP13.4□□□□□ -0.26
MSH5-219ENST00000497269 STK25O00506 426 aa13.39□□□□□ -0.27
MSH5-219ENST00000497269 MS4A3Q96HJ5 214 aa13.38□□□□□ -0.27
MSH5-219ENST00000497269 TAOK2Q9UL54 1235 aa13.38□□□□□ -0.27
MSH5-219ENST00000497269 STK24Q9Y6E0 443 aa13.36□□□□□ -0.27
MSH5-219ENST00000497269 BCL11BQ9C0K0 894 aaPredicted RBP13.34□□□□□ -0.27
MSH5-219ENST00000497269 PSEN1P49768 467 aa13.33□□□□□ -0.28
MSH5-219ENST00000497269 TRPC6Q9Y210 931 aa13.33□□□□□ -0.28
MSH5-219ENST00000497269 PDAP1Q13442 181 aaKnown RBP13.32□□□□□ -0.28
MSH5-219ENST00000497269 HS6ST3Q8IZP7 471 aa13.32□□□□□ -0.28
MSH5-219ENST00000497269 SGIP1Q9BQI5 828 aa13.32□□□□□ -0.28
MSH5-219ENST00000497269 GALR2O43603 387 aaPredicted RBP13.31□□□□□ -0.28
MSH5-219ENST00000497269 BBXQ8WY36 941 aaPredicted RBP13.28□□□□□ -0.28
MSH5-219ENST00000497269 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.27□□□□□ -0.29
MSH5-219ENST00000497269 ABCC9O60706 1549 aa13.26□□□□□ -0.29
MSH5-219ENST00000497269 CFAP44Q96MT7 982 aa13.25□□□□□ -0.29
MSH5-219ENST00000497269 PAXIP1Q6ZW49 1069 aaPredicted RBP13.23□□□□□ -0.29
MSH5-219ENST00000497269 TMEM106CQ9BVX2 250 aa13.23□□□□□ -0.29
MSH5-219ENST00000497269 CABP2Q9NPB3 220 aa13.22□□□□□ -0.29
MSH5-219ENST00000497269 GABBR2O75899 941 aa13.2□□□□□ -0.3
MSH5-219ENST00000497269 PLCB2Q00722 1185 aa13.19□□□□□ -0.3
MSH5-219ENST00000497269 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
MSH5-219ENST00000497269 BMP2KQ9NSY1 1161 aaPredicted RBP13.15□□□□□ -0.3
MSH5-219ENST00000497269 GOLGA2Q08379 1002 aa13.14□□□□□ -0.31
MSH5-219ENST00000497269 EFCAB3Q8N7B9 438 aa13.14□□□□□ -0.31
MSH5-219ENST00000497269 TTLL13PA6NNM8 815 aa13.13□□□□□ -0.31
MSH5-219ENST00000497269 SPRYD3Q8NCJ5 442 aa13.13□□□□□ -0.31
MSH5-219ENST00000497269 TIE1P35590 1138 aa13.12□□□□□ -0.31
MSH5-219ENST00000497269 HAP1P54257 671 aaPredicted RBP13.12□□□□□ -0.31
MSH5-219ENST00000497269 CLCN6P51797 869 aa13.11□□□□□ -0.31
MSH5-219ENST00000497269 SP7Q8TDD2 431 aaPredicted RBP13.11□□□□□ -0.31
MSH5-219ENST00000497269 SLC24A1O60721 1099 aa13.1□□□□□ -0.31
MSH5-219ENST00000497269 DNAJC5Q9H3Z4 198 aa13.08□□□□□ -0.32
MSH5-219ENST00000497269 TRIM35Q9UPQ4 493 aa13.08□□□□□ -0.32
MSH5-219ENST00000497269 ATN1P54259 1190 aaPredicted RBP13.07□□□□□ -0.32
MSH5-219ENST00000497269 DCBLD2Q96PD2 775 aa13.07□□□□□ -0.32
MSH5-219ENST00000497269 GTPBP6O43824 516 aaPredicted RBP13.05□□□□□ -0.32
MSH5-219ENST00000497269 MKRN3Q13064 507 aaKnown RBP13.05□□□□□ -0.32
MSH5-219ENST00000497269 PHF8Q9UPP1 1060 aa13.05□□□□□ -0.32
MSH5-219ENST00000497269 MFRPQ9BY79 579 aa13.04□□□□□ -0.32
MSH5-219ENST00000497269 ATMINO43313 823 aaPredicted RBP13.03□□□□□ -0.32
MSH5-219ENST00000497269 ASTLQ6HA08 431 aaPredicted RBP12.99□□□□□ -0.33
MSH5-219ENST00000497269 CCDC180Q9P1Z9 1646 aa12.98□□□□□ -0.33
MSH5-219ENST00000497269 SOX12O15370 315 aa12.97□□□□□ -0.33
MSH5-219ENST00000497269 NLRP6P59044 892 aa12.97□□□□□ -0.33
MSH5-219ENST00000497269 TSHZ2Q9NRE2 1034 aa12.96□□□□□ -0.33
MSH5-219ENST00000497269 PELP1Q8IZL8 1130 aaKnown RBP12.95□□□□□ -0.34
MSH5-219ENST00000497269 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.95□□□□□ -0.345e-9■■■□□ 19
MSH5-219ENST00000497269 RYDENQ9NUL5 291 aaKnown RBP12.94□□□□□ -0.34
MSH5-219ENST00000497269 POTEIP0CG38 1075 aa12.93□□□□□ -0.34
MSH5-219ENST00000497269 FBXO22Q8NEZ5 403 aa12.93□□□□□ -0.34
MSH5-219ENST00000497269 PPP1R37O75864 691 aa12.92□□□□□ -0.34
MSH5-219ENST00000497269 MS4A4AQ96JQ5 239 aa12.91□□□□□ -0.34
MSH5-219ENST00000497269 DPY19L2Q6NUT2 758 aa12.86□□□□□ -0.35
MSH5-219ENST00000497269 SEC24BO95487 1268 aa12.85□□□□□ -0.35
MSH5-219ENST00000497269 PLCG2P16885 1265 aa12.84□□□□□ -0.35
MSH5-219ENST00000497269 IRX5P78411 483 aaPredicted RBP12.83□□□□□ -0.36
MSH5-219ENST00000497269 IER5LQ5T953 404 aa12.82□□□□□ -0.36
MSH5-219ENST00000497269 SLC39A7Q92504 469 aa12.82□□□□□ -0.36
MSH5-219ENST00000497269 METRNQ9UJH8 293 aa12.82□□□□□ -0.36
MSH5-219ENST00000497269 PDCD7Q8N8D1 485 aaKnown RBP12.81□□□□□ -0.36
MSH5-219ENST00000497269 OCEL1Q9H607 264 aa12.81□□□□□ -0.36
MSH5-219ENST00000497269 COLQQ9Y215 455 aaPredicted RBP12.81□□□□□ -0.36
MSH5-219ENST00000497269 CADPS2Q86UW7 1296 aa12.78□□□□□ -0.36
MSH5-219ENST00000497269 KDM2AQ9Y2K7 1162 aa12.77□□□□□ -0.37
MSH5-219ENST00000497269 C7P10643 843 aa12.76□□□□□ -0.37
MSH5-219ENST00000497269 ILDR1Q86SU0 546 aaPredicted RBP12.76□□□□□ -0.37
MSH5-219ENST00000497269 POTEFA5A3E0 1075 aa12.75□□□□□ -0.37
MSH5-219ENST00000497269 VSIG10Q8N0Z9 540 aa12.74□□□□□ -0.37
MSH5-219ENST00000497269 G3V3G9 751 aa12.73□□□□□ -0.37
MSH5-219ENST00000497269 MICALL2Q8IY33 904 aa12.69□□□□□ -0.38
MSH5-219ENST00000497269 BOLA1Q9Y3E2 137 aa12.69□□□□□ -0.38
MSH5-219ENST00000497269 L3MBTL3Q96JM7 780 aaPredicted RBP12.64□□□□□ -0.39
MSH5-219ENST00000497269 NCKAP5LQ9HCH0 1330 aa12.61□□□□□ -0.39
MSH5-219ENST00000497269 LARP6Q9BRS8 491 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms