RNA–Protein interactions for RNA: ENST00000496855.1

SNX13-211, Transcript of sorting nexin 13, humanhuman

TSL 1 (best)

Gene SNX13, Length 1,499 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-211ENST00000496855 CIZ1Q9ULV3 898 aaPredicted RBP14.04□□□□□ -0.16
SNX13-211ENST00000496855 CCDC61Q9Y6R9 512 aa13.99□□□□□ -0.17
SNX13-211ENST00000496855 ZNF579Q8NAF0 562 aaKnown RBP13.96□□□□□ -0.17
SNX13-211ENST00000496855 AMER1Q5JTC6 1135 aaPredicted RBP13.93□□□□□ -0.18
SNX13-211ENST00000496855 PKD2Q13563 968 aa13.93□□□□□ -0.18
SNX13-211ENST00000496855 PHF12Q96QT6 1004 aa13.92□□□□□ -0.18
SNX13-211ENST00000496855 PYGBP11216 843 aa13.9□□□□□ -0.18
SNX13-211ENST00000496855 TRIM41Q8WV44 630 aa13.9□□□□□ -0.18
SNX13-211ENST00000496855 RTN4Q9NQC3 1192 aaKnown RBP13.89□□□□□ -0.19
SNX13-211ENST00000496855 CHRM1P11229 460 aaPredicted RBP13.87□□□□□ -0.19
SNX13-211ENST00000496855 KIF12Q96FN5 646 aa13.87□□□□□ -0.19
SNX13-211ENST00000496855 ECM2O94769 699 aaPredicted RBP13.85□□□□□ -0.19
SNX13-211ENST00000496855 SP7Q8TDD2 431 aaPredicted RBP13.84□□□□□ -0.19
SNX13-211ENST00000496855 MAP3K13O43283 966 aa13.82□□□□□ -0.2
SNX13-211ENST00000496855 CLCN6P51797 869 aa13.82□□□□□ -0.2
SNX13-211ENST00000496855 SGIP1Q9BQI5 828 aa13.8□□□□□ -0.2
SNX13-211ENST00000496855 PCDHB13Q9Y5F0 798 aa13.78□□□□□ -0.2
SNX13-211ENST00000496855 GABBR2O75899 941 aa13.77□□□□□ -0.21
SNX13-211ENST00000496855 MS4A3Q96HJ5 214 aa13.76□□□□□ -0.21
SNX13-211ENST00000496855 GALR2O43603 387 aaPredicted RBP13.74□□□□□ -0.21
SNX13-211ENST00000496855 ZNF467Q7Z7K2 595 aaPredicted RBP13.73□□□□□ -0.21
SNX13-211ENST00000496855 IFNL1Q8IU54 200 aa13.73□□□□□ -0.21
SNX13-211ENST00000496855 RNF25Q96BH1 459 aaPredicted RBP13.72□□□□□ -0.21
SNX13-211ENST00000496855 RGL2O15211 777 aa13.71□□□□□ -0.21
SNX13-211ENST00000496855 PCDHB8Q9UN66 801 aa13.71□□□□□ -0.21
SNX13-211ENST00000496855 RIOK3O14730 519 aaKnown RBP13.67□□□□□ -0.22
SNX13-211ENST00000496855 TRPC6Q9Y210 931 aa13.63□□□□□ -0.23
SNX13-211ENST00000496855 VGFO15240 615 aaPredicted RBP13.6□□□□□ -0.23
SNX13-211ENST00000496855 PDAP1Q13442 181 aaKnown RBP13.6□□□□□ -0.23
SNX13-211ENST00000496855 TAOK2Q9UL54 1235 aa13.59□□□□□ -0.23
SNX13-211ENST00000496855 TIE1P35590 1138 aa13.58□□□□□ -0.24
SNX13-211ENST00000496855 PSEN1P49768 467 aa13.57□□□□□ -0.24
SNX13-211ENST00000496855 DCBLD2Q96PD2 775 aa13.56□□□□□ -0.24
SNX13-211ENST00000496855 BMP2KQ9NSY1 1161 aaPredicted RBP13.55□□□□□ -0.24
SNX13-211ENST00000496855 TMEM106CQ9BVX2 250 aa13.54□□□□□ -0.24
SNX13-211ENST00000496855 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.53□□□□□ -0.24
SNX13-211ENST00000496855 DCAF8L2P0C7V8 631 aa13.53□□□□□ -0.24
SNX13-211ENST00000496855 ZFP91Q96JP5 570 aaPredicted RBP13.53□□□□□ -0.24
SNX13-211ENST00000496855 TTLL13PA6NNM8 815 aa13.52□□□□□ -0.25
SNX13-211ENST00000496855 ATMINO43313 823 aaPredicted RBP13.5□□□□□ -0.25
SNX13-211ENST00000496855 ASTLQ6HA08 431 aaPredicted RBP13.5□□□□□ -0.25
SNX13-211ENST00000496855 POTEIP0CG38 1075 aa13.48□□□□□ -0.25
SNX13-211ENST00000496855 ATN1P54259 1190 aaPredicted RBP13.47□□□□□ -0.25
SNX13-211ENST00000496855 STK25O00506 426 aa13.46□□□□□ -0.25
SNX13-211ENST00000496855 BCL11BQ9C0K0 894 aaPredicted RBP13.45□□□□□ -0.26
SNX13-211ENST00000496855 CHGAP10645 457 aaKnown RBP13.43□□□□□ -0.26
SNX13-211ENST00000496855 TRIM35Q9UPQ4 493 aa13.43□□□□□ -0.26
SNX13-211ENST00000496855 HS6ST3Q8IZP7 471 aa13.42□□□□□ -0.26
SNX13-211ENST00000496855 STK24Q9Y6E0 443 aa13.42□□□□□ -0.26
SNX13-211ENST00000496855 PELP1Q8IZL8 1130 aaKnown RBP13.41□□□□□ -0.26
SNX13-211ENST00000496855 CABP2Q9NPB3 220 aa13.41□□□□□ -0.26
SNX13-211ENST00000496855 GOLGA2Q08379 1002 aa13.37□□□□□ -0.27
SNX13-211ENST00000496855 MKRN3Q13064 507 aaKnown RBP13.33□□□□□ -0.28
SNX13-211ENST00000496855 EFCAB3Q8N7B9 438 aa13.33□□□□□ -0.28
SNX13-211ENST00000496855 SLC39A7Q92504 469 aa13.33□□□□□ -0.28
SNX13-211ENST00000496855 IER5LQ5T953 404 aa13.32□□□□□ -0.28
SNX13-211ENST00000496855 DNAJC5Q9H3Z4 198 aa13.31□□□□□ -0.28
SNX13-211ENST00000496855 C7P10643 843 aa13.29□□□□□ -0.28
SNX13-211ENST00000496855 METRNQ9UJH8 293 aa13.28□□□□□ -0.28
SNX13-211ENST00000496855 SOX12O15370 315 aa13.27□□□□□ -0.29
SNX13-211ENST00000496855 IRX5P78411 483 aaPredicted RBP13.24□□□□□ -0.29
SNX13-211ENST00000496855 BBXQ8WY36 941 aaPredicted RBP13.24□□□□□ -0.29
SNX13-211ENST00000496855 NKX1-1Q15270 411 aaPredicted RBP13.23□□□□□ -0.29
SNX13-211ENST00000496855 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.23□□□□□ -0.292e-6■■■■□ 23.4
SNX13-211ENST00000496855 SEC24BO95487 1268 aa13.22□□□□□ -0.29
SNX13-211ENST00000496855 ILDR1Q86SU0 546 aaPredicted RBP13.22□□□□□ -0.29
SNX13-211ENST00000496855 MFRPQ9BY79 579 aa13.21□□□□□ -0.3
SNX13-211ENST00000496855 OCEL1Q9H607 264 aa13.21□□□□□ -0.3
SNX13-211ENST00000496855 PHF8Q9UPP1 1060 aa13.21□□□□□ -0.3
SNX13-211ENST00000496855 COLQQ9Y215 455 aaPredicted RBP13.21□□□□□ -0.3
SNX13-211ENST00000496855 POTEFA5A3E0 1075 aa13.2□□□□□ -0.3
SNX13-211ENST00000496855 PLCG2P16885 1265 aa13.2□□□□□ -0.3
SNX13-211ENST00000496855 NLRP6P59044 892 aa13.19□□□□□ -0.3
SNX13-211ENST00000496855 PDCD7Q8N8D1 485 aaKnown RBP13.17□□□□□ -0.3
SNX13-211ENST00000496855 FBXO22Q8NEZ5 403 aa13.17□□□□□ -0.3
SNX13-211ENST00000496855 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.15□□□□□ -0.3
SNX13-211ENST00000496855 MS4A4AQ96JQ5 239 aa13.14□□□□□ -0.31
SNX13-211ENST00000496855 RYDENQ9NUL5 291 aaKnown RBP13.12□□□□□ -0.31
SNX13-211ENST00000496855 GTPBP6O43824 516 aaPredicted RBP13.1□□□□□ -0.31
SNX13-211ENST00000496855 DPY19L2Q6NUT2 758 aa13.1□□□□□ -0.31
SNX13-211ENST00000496855 POTEB2H3BUK9 544 aa13.06□□□□□ -0.32
SNX13-211ENST00000496855 SPRYD3Q8NCJ5 442 aa13.06□□□□□ -0.32
SNX13-211ENST00000496855 PAXIP1Q6ZW49 1069 aaPredicted RBP13.04□□□□□ -0.32
SNX13-211ENST00000496855 L3MBTL3Q96JM7 780 aaPredicted RBP13.04□□□□□ -0.32
SNX13-211ENST00000496855 PPP1R37O75864 691 aa13.03□□□□□ -0.32
SNX13-211ENST00000496855 CFAP44Q96MT7 982 aa13.02□□□□□ -0.33
SNX13-211ENST00000496855 BOLA1Q9Y3E2 137 aa13.01□□□□□ -0.33
SNX13-211ENST00000496855 POTEJP0CG39 1038 aa12.99□□□□□ -0.33
SNX13-211ENST00000496855 LHX8Q68G74 356 aa12.99□□□□□ -0.33
SNX13-211ENST00000496855 G3V3G9 751 aa12.98□□□□□ -0.33
SNX13-211ENST00000496855 MICALL2Q8IY33 904 aa12.97□□□□□ -0.33
SNX13-211ENST00000496855 TMEM121BQ9BXQ6 578 aaPredicted RBP12.97□□□□□ -0.33
SNX13-211ENST00000496855 PLCB2Q00722 1185 aa12.95□□□□□ -0.34
SNX13-211ENST00000496855 MAMSTRQ6ZN01 415 aa12.92□□□□□ -0.34
SNX13-211ENST00000496855 C3orf67Q6ZVT6 689 aa12.9□□□□□ -0.34
SNX13-211ENST00000496855 SCUBE2Q9NQ36 999 aa12.9□□□□□ -0.34
SNX13-211ENST00000496855 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.87□□□□□ -0.35
SNX13-211ENST00000496855 OTUD5Q96G74 571 aa12.85□□□□□ -0.35
SNX13-211ENST00000496855 TMEM92Q6UXU6 159 aa12.79□□□□□ -0.36
SNX13-211ENST00000496855 CADPS2Q86UW7 1296 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms