RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ZNF579Q8NAF0 562 aaKnown RBP16.78■□□□□ 0.28
SF3B1-212ENST00000496458 CCDC61Q9Y6R9 512 aa16.78■□□□□ 0.28
SF3B1-212ENST00000496458 GSE1Q14687 1217 aa16.77■□□□□ 0.28
SF3B1-212ENST00000496458 PHF12Q96QT6 1004 aa16.76■□□□□ 0.27
SF3B1-212ENST00000496458 SP7Q8TDD2 431 aaPredicted RBP16.74■□□□□ 0.27
SF3B1-212ENST00000496458 PYGBP11216 843 aa16.65■□□□□ 0.26
SF3B1-212ENST00000496458 KIF12Q96FN5 646 aa16.62■□□□□ 0.25
SF3B1-212ENST00000496458 GABBR2O75899 941 aa16.61■□□□□ 0.25
SF3B1-212ENST00000496458 MAP3K13O43283 966 aa16.58■□□□□ 0.24
SF3B1-212ENST00000496458 CLCN6P51797 869 aa16.56■□□□□ 0.24
SF3B1-212ENST00000496458 PKD2Q13563 968 aa16.55■□□□□ 0.24
SF3B1-212ENST00000496458 TRIM41Q8WV44 630 aa16.55■□□□□ 0.24
SF3B1-212ENST00000496458 GALR2O43603 387 aaPredicted RBP16.54■□□□□ 0.24
SF3B1-212ENST00000496458 MS4A3Q96HJ5 214 aa16.54■□□□□ 0.24
SF3B1-212ENST00000496458 PCDHB13Q9Y5F0 798 aa16.53■□□□□ 0.24
SF3B1-212ENST00000496458 CHRM1P11229 460 aaPredicted RBP16.52■□□□□ 0.24
SF3B1-212ENST00000496458 ECM2O94769 699 aaPredicted RBP16.5■□□□□ 0.23
SF3B1-212ENST00000496458 SGIP1Q9BQI5 828 aa16.48■□□□□ 0.23
SF3B1-212ENST00000496458 IFNL1Q8IU54 200 aa16.46■□□□□ 0.23
SF3B1-212ENST00000496458 AMER1Q5JTC6 1135 aaPredicted RBP16.43■□□□□ 0.22
SF3B1-212ENST00000496458 PCDHB8Q9UN66 801 aa16.43■□□□□ 0.22
SF3B1-212ENST00000496458 ZNF467Q7Z7K2 595 aaPredicted RBP16.4■□□□□ 0.22
SF3B1-212ENST00000496458 RTN4Q9NQC3 1192 aaKnown RBP16.4■□□□□ 0.22
SF3B1-212ENST00000496458 TRPC6Q9Y210 931 aa16.39■□□□□ 0.21
SF3B1-212ENST00000496458 RNF25Q96BH1 459 aaPredicted RBP16.37■□□□□ 0.21
SF3B1-212ENST00000496458 DCBLD2Q96PD2 775 aa16.35■□□□□ 0.21
SF3B1-212ENST00000496458 RGL2O15211 777 aa16.33■□□□□ 0.2
SF3B1-212ENST00000496458 RIOK3O14730 519 aaKnown RBP16.32■□□□□ 0.2
SF3B1-212ENST00000496458 TIE1P35590 1138 aa16.28■□□□□ 0.2
SF3B1-212ENST00000496458 BMP2KQ9NSY1 1161 aaPredicted RBP16.28■□□□□ 0.2
SF3B1-212ENST00000496458 POTEIP0CG38 1075 aa16.26■□□□□ 0.19
SF3B1-212ENST00000496458 PSEN1P49768 467 aa16.25■□□□□ 0.19
SF3B1-212ENST00000496458 PDAP1Q13442 181 aaKnown RBP16.25■□□□□ 0.19
SF3B1-212ENST00000496458 TMEM106CQ9BVX2 250 aa16.24■□□□□ 0.19
SF3B1-212ENST00000496458 TTLL13PA6NNM8 815 aa16.23■□□□□ 0.19
SF3B1-212ENST00000496458 VGFO15240 615 aaPredicted RBP16.22■□□□□ 0.19
SF3B1-212ENST00000496458 ATMINO43313 823 aaPredicted RBP16.22■□□□□ 0.19
SF3B1-212ENST00000496458 ASTLQ6HA08 431 aaPredicted RBP16.22■□□□□ 0.19
SF3B1-212ENST00000496458 ATN1P54259 1190 aaPredicted RBP16.19■□□□□ 0.18
SF3B1-212ENST00000496458 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.17■□□□□ 0.18
SF3B1-212ENST00000496458 ZFP91Q96JP5 570 aaPredicted RBP16.17■□□□□ 0.18
SF3B1-212ENST00000496458 TAOK2Q9UL54 1235 aa16.17■□□□□ 0.18
SF3B1-212ENST00000496458 PELP1Q8IZL8 1130 aaKnown RBP16.14■□□□□ 0.17
SF3B1-212ENST00000496458 DCAF8L2P0C7V8 631 aa16.13■□□□□ 0.17
SF3B1-212ENST00000496458 TRIM35Q9UPQ4 493 aa16.13■□□□□ 0.17
SF3B1-212ENST00000496458 STK25O00506 426 aa16.07■□□□□ 0.16
SF3B1-212ENST00000496458 BCL11BQ9C0K0 894 aaPredicted RBP16.07■□□□□ 0.16
SF3B1-212ENST00000496458 CABP2Q9NPB3 220 aa16.07■□□□□ 0.16
SF3B1-212ENST00000496458 GOLGA2Q08379 1002 aa16.05■□□□□ 0.16
SF3B1-212ENST00000496458 STK24Q9Y6E0 443 aa16.04■□□□□ 0.16
SF3B1-212ENST00000496458 SLC39A7Q92504 469 aa16.02■□□□□ 0.16
SF3B1-212ENST00000496458 CHGAP10645 457 aaKnown RBP16■□□□□ 0.15
SF3B1-212ENST00000496458 METRNQ9UJH8 293 aa16■□□□□ 0.15
SF3B1-212ENST00000496458 MKRN3Q13064 507 aaKnown RBP15.98■□□□□ 0.15
SF3B1-212ENST00000496458 C7P10643 843 aa15.97■□□□□ 0.15
SF3B1-212ENST00000496458 HS6ST3Q8IZP7 471 aa15.97■□□□□ 0.15
SF3B1-212ENST00000496458 IER5LQ5T953 404 aa15.96■□□□□ 0.15
SF3B1-212ENST00000496458 EFCAB3Q8N7B9 438 aa15.95■□□□□ 0.14
SF3B1-212ENST00000496458 SEC24BO95487 1268 aa15.91■□□□□ 0.14
SF3B1-212ENST00000496458 IRX5P78411 483 aaPredicted RBP15.88■□□□□ 0.13
SF3B1-212ENST00000496458 COLQQ9Y215 455 aaPredicted RBP15.88■□□□□ 0.13
SF3B1-212ENST00000496458 POTEFA5A3E0 1075 aa15.87■□□□□ 0.13
SF3B1-212ENST00000496458 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.87■□□□□ 0.139e-26■■■■□ 24.4
SF3B1-212ENST00000496458 PLCG2P16885 1265 aa15.86■□□□□ 0.13
SF3B1-212ENST00000496458 SOX12O15370 315 aa15.83■□□□□ 0.12
SF3B1-212ENST00000496458 OCEL1Q9H607 264 aa15.83■□□□□ 0.12
SF3B1-212ENST00000496458 PHF8Q9UPP1 1060 aa15.81■□□□□ 0.12
SF3B1-212ENST00000496458 PDCD7Q8N8D1 485 aaKnown RBP15.79■□□□□ 0.12
SF3B1-212ENST00000496458 MFRPQ9BY79 579 aa15.78■□□□□ 0.12
SF3B1-212ENST00000496458 ILDR1Q86SU0 546 aaPredicted RBP15.77■□□□□ 0.12
SF3B1-212ENST00000496458 DNAJC5Q9H3Z4 198 aa15.77■□□□□ 0.12
SF3B1-212ENST00000496458 POTEB2H3BUK9 544 aa15.75■□□□□ 0.11
SF3B1-212ENST00000496458 NLRP6P59044 892 aa15.75■□□□□ 0.11
SF3B1-212ENST00000496458 NKX1-1Q15270 411 aaPredicted RBP15.75■□□□□ 0.11
SF3B1-212ENST00000496458 LHX8Q68G74 356 aa15.72■□□□□ 0.11
SF3B1-212ENST00000496458 FBXO22Q8NEZ5 403 aa15.72■□□□□ 0.11
SF3B1-212ENST00000496458 DPY19L2Q6NUT2 758 aa15.71■□□□□ 0.11
SF3B1-212ENST00000496458 MS4A4AQ96JQ5 239 aa15.71■□□□□ 0.11
SF3B1-212ENST00000496458 BBXQ8WY36 941 aaPredicted RBP15.68■□□□□ 0.1
SF3B1-212ENST00000496458 POTEJP0CG39 1038 aa15.66■□□□□ 0.1
SF3B1-212ENST00000496458 L3MBTL3Q96JM7 780 aaPredicted RBP15.62■□□□□ 0.09
SF3B1-212ENST00000496458 G3V3G9 751 aa15.59■□□□□ 0.09
SF3B1-212ENST00000496458 RYDENQ9NUL5 291 aaKnown RBP15.59■□□□□ 0.09
SF3B1-212ENST00000496458 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.59■□□□□ 0.09
SF3B1-212ENST00000496458 BOLA1Q9Y3E2 137 aa15.59■□□□□ 0.09
SF3B1-212ENST00000496458 GTPBP6O43824 516 aaPredicted RBP15.57■□□□□ 0.08
SF3B1-212ENST00000496458 PPP1R37O75864 691 aa15.56■□□□□ 0.08
SF3B1-212ENST00000496458 SCUBE2Q9NQ36 999 aa15.55■□□□□ 0.08
SF3B1-212ENST00000496458 MAMSTRQ6ZN01 415 aa15.54■□□□□ 0.08
SF3B1-212ENST00000496458 MICALL2Q8IY33 904 aa15.53■□□□□ 0.08
SF3B1-212ENST00000496458 OTUD5Q96G74 571 aa15.52■□□□□ 0.08
SF3B1-212ENST00000496458 C3orf67Q6ZVT6 689 aa15.51■□□□□ 0.07
SF3B1-212ENST00000496458 TMEM121BQ9BXQ6 578 aaPredicted RBP15.49■□□□□ 0.07
SF3B1-212ENST00000496458 PAXIP1Q6ZW49 1069 aaPredicted RBP15.48■□□□□ 0.07
SF3B1-212ENST00000496458 SPRYD3Q8NCJ5 442 aa15.48■□□□□ 0.07
SF3B1-212ENST00000496458 CFAP44Q96MT7 982 aa15.48■□□□□ 0.07
SF3B1-212ENST00000496458 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.47■□□□□ 0.07
SF3B1-212ENST00000496458 SLAIN1Q8ND83 568 aa15.4■□□□□ 0.06
SF3B1-212ENST00000496458 TMEM92Q6UXU6 159 aa15.33■□□□□ 0.04
SF3B1-212ENST00000496458 PLCB2Q00722 1185 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms