RNA–Protein interactions for RNA: ENST00000493551.1

CLIP4-212, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 3

Gene CLIP4, Length 627 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-212ENST00000493551 ATMINO43313 823 aaPredicted RBP13.94□□□□□ -0.18
CLIP4-212ENST00000493551 C7P10643 843 aa13.94□□□□□ -0.18
CLIP4-212ENST00000493551 PROM2Q8N271 834 aa13.94□□□□□ -0.18
CLIP4-212ENST00000493551 POTEMA6NI47 508 aa13.9□□□□□ -0.18
CLIP4-212ENST00000493551 TSPYL2Q9H2G4 693 aaPredicted RBP13.9□□□□□ -0.18
CLIP4-212ENST00000493551 CCDC61Q9Y6R9 512 aa13.87□□□□□ -0.19
CLIP4-212ENST00000493551 MAMSTRQ6ZN01 415 aa13.86□□□□□ -0.19
CLIP4-212ENST00000493551 POTEGQ6S5H5 508 aa13.85□□□□□ -0.19
CLIP4-212ENST00000493551 POTEJP0CG39 1038 aa13.83□□□□□ -0.2
CLIP4-212ENST00000493551 PLEKHG5O94827 1062 aa13.8□□□□□ -0.2
CLIP4-212ENST00000493551 ATN1P54259 1190 aaPredicted RBP13.8□□□□□ -0.2
CLIP4-212ENST00000493551 KIF12Q96FN5 646 aa13.8□□□□□ -0.2
CLIP4-212ENST00000493551 SCUBE2Q9NQ36 999 aa13.76□□□□□ -0.21
CLIP4-212ENST00000493551 PCDH10Q9P2E7 1040 aa13.75□□□□□ -0.21
CLIP4-212ENST00000493551 BMP2KQ9NSY1 1161 aaPredicted RBP13.73□□□□□ -0.21
CLIP4-212ENST00000493551 MIER1Q8N108 512 aa13.72□□□□□ -0.21
CLIP4-212ENST00000493551 TIE1P35590 1138 aa13.71□□□□□ -0.21
CLIP4-212ENST00000493551 TRPC6Q9Y210 931 aa13.7□□□□□ -0.22
CLIP4-212ENST00000493551 MAP3K13O43283 966 aa13.69□□□□□ -0.22
CLIP4-212ENST00000493551 RASEFQ8IZ41 740 aa13.68□□□□□ -0.22
CLIP4-212ENST00000493551 POTEFA5A3E0 1075 aa13.66□□□□□ -0.22
CLIP4-212ENST00000493551 LCE2DQ5TA82 110 aaPredicted RBP13.64□□□□□ -0.23
CLIP4-212ENST00000493551 FAM163AQ96GL9 167 aaPredicted RBP13.62□□□□□ -0.23
CLIP4-212ENST00000493551 TTLL13PA6NNM8 815 aa13.6□□□□□ -0.23
CLIP4-212ENST00000493551 SEC24BO95487 1268 aa13.58□□□□□ -0.24
CLIP4-212ENST00000493551 PLCD3Q8N3E9 789 aa13.58□□□□□ -0.24
CLIP4-212ENST00000493551 SGIP1Q9BQI5 828 aa13.58□□□□□ -0.24
CLIP4-212ENST00000493551 ZBTB47Q9UFB7 747 aaPredicted RBP13.56□□□□□ -0.24
CLIP4-212ENST00000493551 COLQQ9Y215 455 aaPredicted RBP13.54□□□□□ -0.24
CLIP4-212ENST00000493551 IER5LQ5T953 404 aa13.53□□□□□ -0.24
CLIP4-212ENST00000493551 PCDHB13Q9Y5F0 798 aa13.53□□□□□ -0.24
CLIP4-212ENST00000493551 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
CLIP4-212ENST00000493551 NUBP1P53384 320 aa13.47□□□□□ -0.25
CLIP4-212ENST00000493551 IFNL1Q8IU54 200 aa13.43□□□□□ -0.26
CLIP4-212ENST00000493551 FAM212AQ96EL1 285 aa13.43□□□□□ -0.26
CLIP4-212ENST00000493551 TMEM106CQ9BVX2 250 aa13.39□□□□□ -0.27
CLIP4-212ENST00000493551 SLAIN1Q8ND83 568 aa13.37□□□□□ -0.27
CLIP4-212ENST00000493551 PLCG2P16885 1265 aa13.36□□□□□ -0.27
CLIP4-212ENST00000493551 CDAN1Q8IWY9 1227 aa13.34□□□□□ -0.27
CLIP4-212ENST00000493551 IRX5P78411 483 aaPredicted RBP13.29□□□□□ -0.28
CLIP4-212ENST00000493551 ST18O60284 1047 aa13.28□□□□□ -0.28
CLIP4-212ENST00000493551 FKBP8Q14318 412 aa13.24□□□□□ -0.29
CLIP4-212ENST00000493551 OCEL1Q9H607 264 aa13.24□□□□□ -0.29
CLIP4-212ENST00000493551 DCAF8Q5TAQ9 597 aa13.23□□□□□ -0.29
CLIP4-212ENST00000493551 PYGBP11216 843 aa13.21□□□□□ -0.29
CLIP4-212ENST00000493551 TMEM121BQ9BXQ6 578 aaPredicted RBP13.18□□□□□ -0.3
CLIP4-212ENST00000493551 SNPHO15079 494 aa13.16□□□□□ -0.3
CLIP4-212ENST00000493551 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.16□□□□□ -0.3
CLIP4-212ENST00000493551 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
CLIP4-212ENST00000493551 PCDHB8Q9UN66 801 aa13.15□□□□□ -0.3
CLIP4-212ENST00000493551 ZNF467Q7Z7K2 595 aaPredicted RBP13.07□□□□□ -0.32
CLIP4-212ENST00000493551 GSE1Q14687 1217 aa13.06□□□□□ -0.32
CLIP4-212ENST00000493551 GOLGA2Q08379 1002 aa13.04□□□□□ -0.32
CLIP4-212ENST00000493551 C3orf67Q6ZVT6 689 aa13.04□□□□□ -0.32
CLIP4-212ENST00000493551 PDCD7Q8N8D1 485 aaKnown RBP13.04□□□□□ -0.32
CLIP4-212ENST00000493551 MKRN3Q13064 507 aaKnown RBP13.03□□□□□ -0.32
CLIP4-212ENST00000493551 MMRN1Q13201 1228 aa13.02□□□□□ -0.33
CLIP4-212ENST00000493551 MARVELD3Q96A59 401 aa13.02□□□□□ -0.33
CLIP4-212ENST00000493551 L3MBTL3Q96JM7 780 aaPredicted RBP13.02□□□□□ -0.33
CLIP4-212ENST00000493551 SPNS2Q8IVW8 549 aa13.01□□□□□ -0.33
CLIP4-212ENST00000493551 KLHL34Q8N239 644 aa13□□□□□ -0.33
CLIP4-212ENST00000493551 CHRM1P11229 460 aaPredicted RBP12.97□□□□□ -0.33
CLIP4-212ENST00000493551 VASPP50552 380 aaPredicted RBP12.97□□□□□ -0.33
CLIP4-212ENST00000493551 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLIP4-212ENST00000493551 EMP3P54852 163 aa12.93□□□□□ -0.34
CLIP4-212ENST00000493551 PSEN1P49768 467 aa12.92□□□□□ -0.34
CLIP4-212ENST00000493551 PDAP1Q13442 181 aaKnown RBP12.86□□□□□ -0.35
CLIP4-212ENST00000493551 ILDR1Q86SU0 546 aaPredicted RBP12.86□□□□□ -0.35
CLIP4-212ENST00000493551 HS3ST6Q96QI5 342 aa12.84□□□□□ -0.35
CLIP4-212ENST00000493551 POTEB3A0JP26 581 aa12.82□□□□□ -0.36
CLIP4-212ENST00000493551 FAM205CA6NFA0 338 aa12.82□□□□□ -0.36
CLIP4-212ENST00000493551 POTEBQ6S5H4 581 aa12.82□□□□□ -0.36
CLIP4-212ENST00000493551 G3V3G9 751 aa12.8□□□□□ -0.36
CLIP4-212ENST00000493551 KRTAP3-3Q9BYR6 98 aa12.8□□□□□ -0.36
CLIP4-212ENST00000493551 KRTAP3-2Q9BYR7 98 aa12.8□□□□□ -0.36
CLIP4-212ENST00000493551 CABP2Q9NPB3 220 aa12.78□□□□□ -0.36
CLIP4-212ENST00000493551 DPY19L2Q6NUT2 758 aa12.77□□□□□ -0.37
CLIP4-212ENST00000493551 BOLA1Q9Y3E2 137 aa12.77□□□□□ -0.37
CLIP4-212ENST00000493551 SPOCK2Q92563 424 aa12.74□□□□□ -0.37
CLIP4-212ENST00000493551 CIZ1Q9ULV3 898 aaPredicted RBP12.73□□□□□ -0.37
CLIP4-212ENST00000493551 HOXB3P14651 431 aaPredicted RBP12.71□□□□□ -0.37
CLIP4-212ENST00000493551 ZNF710Q8N1W2 664 aa12.69□□□□□ -0.38
CLIP4-212ENST00000493551 HOXB1P14653 301 aaPredicted RBP12.68□□□□□ -0.38
CLIP4-212ENST00000493551 DOK7Q18PE1 504 aa12.67□□□□□ -0.38
CLIP4-212ENST00000493551 IFNLR1Q8IU57 520 aaPredicted RBP12.67□□□□□ -0.38
CLIP4-212ENST00000493551 ERBB3P21860 1342 aa12.62□□□□□ -0.39
CLIP4-212ENST00000493551 RIMBP2O15034 1052 aa12.6□□□□□ -0.39
CLIP4-212ENST00000493551 TRIM41Q8WV44 630 aa12.59□□□□□ -0.39
CLIP4-212ENST00000493551 EFCAB3Q8N7B9 438 aa12.57□□□□□ -0.4
CLIP4-212ENST00000493551 ZSWIM6Q9HCJ5 1215 aa12.53□□□□□ -0.4
CLIP4-212ENST00000493551 VARS2Q5ST30 1063 aaKnown RBP12.52□□□□□ -0.41
CLIP4-212ENST00000493551 MICALL2Q8IY33 904 aa12.51□□□□□ -0.41
CLIP4-212ENST00000493551 RNF166Q96A37 237 aaPredicted RBP12.51□□□□□ -0.41
CLIP4-212ENST00000493551 TMEM92Q6UXU6 159 aa12.47□□□□□ -0.41
CLIP4-212ENST00000493551 SOX12O15370 315 aa12.46□□□□□ -0.41
CLIP4-212ENST00000493551 ZNF687Q8N1G0 1237 aa12.45□□□□□ -0.42
CLIP4-212ENST00000493551 MYT1LQ9UL68 1186 aa12.44□□□□□ -0.42
CLIP4-212ENST00000493551 GPR153Q6NV75 609 aa12.42□□□□□ -0.42
CLIP4-212ENST00000493551 RIOK3O14730 519 aaKnown RBP12.41□□□□□ -0.42
CLIP4-212ENST00000493551 PTGER2P43116 358 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms