RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 DSG3P32926 999 aa9.37□□□□□ -0.91
VPS13A-212ENST00000493341 RNF25Q96BH1 459 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-212ENST00000493341 GTF3C3Q9Y5Q9 886 aa9.34□□□□□ -0.91
VPS13A-212ENST00000493341 NKX1-1Q15270 411 aaPredicted RBP9.33□□□□□ -0.92
VPS13A-212ENST00000493341 GSE1Q14687 1217 aa9.32□□□□□ -0.92
VPS13A-212ENST00000493341 GTPBP6O43824 516 aaPredicted RBP9.3□□□□□ -0.92
VPS13A-212ENST00000493341 RIOK3O14730 519 aaKnown RBP9.29□□□□□ -0.92
VPS13A-212ENST00000493341 DCAF8Q5TAQ9 597 aa9.28□□□□□ -0.92
VPS13A-212ENST00000493341 STK25O00506 426 aa9.27□□□□□ -0.92
VPS13A-212ENST00000493341 NUBP1P53384 320 aa9.24□□□□□ -0.93
VPS13A-212ENST00000493341 VGFO15240 615 aaPredicted RBP9.2□□□□□ -0.94
VPS13A-212ENST00000493341 TMEM132AQ24JP5 1023 aa9.19□□□□□ -0.94
VPS13A-212ENST00000493341 ERICH6Q7L0X2 663 aa9.19□□□□□ -0.94
VPS13A-212ENST00000493341 FAM212AQ96EL1 285 aa9.17□□□□□ -0.94
VPS13A-212ENST00000493341 STK24Q9Y6E0 443 aa9.17□□□□□ -0.94
VPS13A-212ENST00000493341 BCL11BQ9C0K0 894 aaPredicted RBP9.17□□□□□ -0.94
VPS13A-212ENST00000493341 RYDENQ9NUL5 291 aaKnown RBP9.15□□□□□ -0.94
VPS13A-212ENST00000493341 ARXQ96QS3 562 aa9.14□□□□□ -0.95
VPS13A-212ENST00000493341 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.13□□□□□ -0.95
VPS13A-212ENST00000493341 P3H3Q8IVL6 736 aa9.13□□□□□ -0.95
VPS13A-212ENST00000493341 ZFP91Q96JP5 570 aaPredicted RBP9.13□□□□□ -0.95
VPS13A-212ENST00000493341 CHRM1P11229 460 aaPredicted RBP9.09□□□□□ -0.95
VPS13A-212ENST00000493341 C14orf37Q86TY3 774 aa9.09□□□□□ -0.95
VPS13A-212ENST00000493341 WDR70Q9NW82 654 aa9.08□□□□□ -0.96
VPS13A-212ENST00000493341 PYGBP11216 843 aa9.07□□□□□ -0.96
VPS13A-212ENST00000493341 SGIP1Q9BQI5 828 aa9.07□□□□□ -0.96
VPS13A-212ENST00000493341 RASEFQ8IZ41 740 aa9.07□□□□□ -0.96
VPS13A-212ENST00000493341 CLEC11AQ9Y240 323 aa9.07□□□□□ -0.96
VPS13A-212ENST00000493341 LMOD2Q6P5Q4 547 aa9.06□□□□□ -0.96
VPS13A-212ENST00000493341 SPDYE1Q8NFV5 336 aaPredicted RBP9.05□□□□□ -0.96
VPS13A-212ENST00000493341 CREBZFQ9NS37 354 aa9.05□□□□□ -0.96
VPS13A-212ENST00000493341 PRR29P0C7W0 189 aa9.05□□□□□ -0.96
VPS13A-212ENST00000493341 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS13A-212ENST00000493341 KCNV2Q8TDN2 545 aa9.05□□□□□ -0.96
VPS13A-212ENST00000493341 MNX1P50219 401 aaPredicted RBP9.04□□□□□ -0.96
VPS13A-212ENST00000493341 DAXXQ9UER7 740 aaPredicted RBP9.02□□□□□ -0.97
VPS13A-212ENST00000493341 CADPS2Q86UW7 1296 aa9.01□□□□□ -0.97
VPS13A-212ENST00000493341 HOMEZQ8IX15 550 aa8.98□□□□□ -0.97
VPS13A-212ENST00000493341 BRPF1P55201 1214 aaPredicted RBP8.97□□□□□ -0.97
VPS13A-212ENST00000493341 AKT1S1Q96B36 256 aa8.93□□□□□ -0.98
VPS13A-212ENST00000493341 NEUROD2Q15784 382 aa8.92□□□□□ -0.98
VPS13A-212ENST00000493341 ZC3H15Q8WU90 426 aaKnown RBP8.9□□□□□ -0.98
VPS13A-212ENST00000493341 ZNF467Q7Z7K2 595 aaPredicted RBP8.9□□□□□ -0.99
VPS13A-212ENST00000493341 ARHGEF1Q92888 912 aaKnown RBP8.88□□□□□ -0.99
VPS13A-212ENST00000493341 RBM42Q9BTD8 480 aaKnown RBP8.88□□□□□ -0.99
VPS13A-212ENST00000493341 SLC24A3Q9HC58 644 aa8.88□□□□□ -0.99
VPS13A-212ENST00000493341 PDAP1Q13442 181 aaKnown RBP8.87□□□□□ -0.99
VPS13A-212ENST00000493341 REM2Q8IYK8 340 aaPredicted RBP8.87□□□□□ -0.99
VPS13A-212ENST00000493341 TSPYL2Q9H2G4 693 aaPredicted RBP8.87□□□□□ -0.99
VPS13A-212ENST00000493341 SUPT5HO00267 1087 aaKnown RBP8.87□□□□□ -0.99
VPS13A-212ENST00000493341 SEMA3EO15041 775 aa8.86□□□□□ -0.99
VPS13A-212ENST00000493341 MFRPQ9BY79 579 aa8.86□□□□□ -0.99
VPS13A-212ENST00000493341 E2F4Q16254 413 aa8.85□□□□□ -0.99
VPS13A-212ENST00000493341 PCDHB8Q9UN66 801 aa8.85□□□□□ -0.99
VPS13A-212ENST00000493341 PCDHB13Q9Y5F0 798 aa8.85□□□□□ -0.99
VPS13A-212ENST00000493341 POTEHQ6S545 545 aa8.82□□□□□ -1
VPS13A-212ENST00000493341 PPP1R37O75864 691 aa8.81□□□□□ -1
VPS13A-212ENST00000493341 TESPA1A2RU30 521 aaPredicted RBP8.81□□□□□ -1
VPS13A-212ENST00000493341 PSEN1P49768 467 aa8.8□□□□□ -1
VPS13A-212ENST00000493341 PITPNM1O00562 1244 aa8.76□□□□□ -1.01
VPS13A-212ENST00000493341 ZMYND10O75800 440 aa8.76□□□□□ -1.01
VPS13A-212ENST00000493341 SMYD5Q6GMV2 418 aa8.75□□□□□ -1.01
VPS13A-212ENST00000493341 CHADLQ6NUI6 762 aa8.75□□□□□ -1.01
VPS13A-212ENST00000493341 NLRP6P59044 892 aa8.74□□□□□ -1.01
VPS13A-212ENST00000493341 EFCAB3Q8N7B9 438 aa8.74□□□□□ -1.01
VPS13A-212ENST00000493341 ZNF579Q8NAF0 562 aaKnown RBP8.73□□□□□ -1.01
VPS13A-212ENST00000493341 FBXO22Q8NEZ5 403 aa8.73□□□□□ -1.01
VPS13A-212ENST00000493341 LARP6Q9BRS8 491 aaKnown RBP8.73□□□□□ -1.01
VPS13A-212ENST00000493341 CABP2Q9NPB3 220 aa8.73□□□□□ -1.01
VPS13A-212ENST00000493341 PHF8Q9UPP1 1060 aa8.73□□□□□ -1.01
VPS13A-212ENST00000493341 CCDC61Q9Y6R9 512 aa8.71□□□□□ -1.02
VPS13A-212ENST00000493341 NCKAP5LQ9HCH0 1330 aa8.71□□□□□ -1.02
VPS13A-212ENST00000493341 FARP1Q9Y4F1 1045 aaPredicted RBP8.7□□□□□ -1.02
VPS13A-212ENST00000493341 SOX12O15370 315 aa8.7□□□□□ -1.02
VPS13A-212ENST00000493341 PDE4AP27815 886 aa8.68□□□□□ -1.02
VPS13A-212ENST00000493341 BARGINQ6ZT62 677 aa8.68□□□□□ -1.02
VPS13A-212ENST00000493341 IFNL1Q8IU54 200 aa8.68□□□□□ -1.02
VPS13A-212ENST00000493341 GPBP1L1Q9HC44 474 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-212ENST00000493341 IL27Q8NEV9 243 aa8.66□□□□□ -1.02
VPS13A-212ENST00000493341 KRI1Q8N9T8 703 aaKnown RBP8.66□□□□□ -1.02
VPS13A-212ENST00000493341 DDX27Q96GQ7 796 aaKnown RBP8.65□□□□□ -1.02
VPS13A-212ENST00000493341 AK7Q96M32 723 aa8.65□□□□□ -1.02
VPS13A-212ENST00000493341 RBM26Q5T8P6 1007 aaKnown RBP8.64□□□□□ -1.03
VPS13A-212ENST00000493341 MAP3K13O43283 966 aa8.63□□□□□ -1.03
VPS13A-212ENST00000493341 GPIHBP1Q8IV16 184 aa8.63□□□□□ -1.03
VPS13A-212ENST00000493341 MFSD10Q14728 455 aa8.62□□□□□ -1.03
VPS13A-212ENST00000493341 PODXL2Q9NZ53 605 aa8.61□□□□□ -1.03
VPS13A-212ENST00000493341 UBTFP17480 764 aaKnown RBP8.61□□□□□ -1.03
VPS13A-212ENST00000493341 CRISPLD2Q9H0B8 497 aa8.61□□□□□ -1.03
VPS13A-212ENST00000493341 ARIH1Q9Y4X5 557 aaPredicted RBP8.61□□□□□ -1.03
VPS13A-212ENST00000493341 PAK3O75914 559 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-212ENST00000493341 MLLT3P42568 568 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-212ENST00000493341 ZMYND15Q9H091 742 aa8.6□□□□□ -1.03
VPS13A-212ENST00000493341 KDM4CQ9H3R0 1056 aa8.6□□□□□ -1.03
VPS13A-212ENST00000493341 CHRDL2Q6WN34 429 aa8.59□□□□□ -1.03
VPS13A-212ENST00000493341 MS4A4AQ96JQ5 239 aa8.58□□□□□ -1.04
VPS13A-212ENST00000493341 KIF12Q96FN5 646 aa8.58□□□□□ -1.04
VPS13A-212ENST00000493341 PRKAR2AP13861 404 aaKnown RBP8.57□□□□□ -1.04
VPS13A-212ENST00000493341 CAMK2BQ13554 666 aa8.57□□□□□ -1.04
VPS13A-212ENST00000493341 RSPH6AQ9H0K4 717 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms