RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 NUBP1P53384 320 aa13.58□□□□□ -0.24
PRPF40A-210ENST00000489741 ZNF579Q8NAF0 562 aaKnown RBP13.58□□□□□ -0.24
PRPF40A-210ENST00000489741 FAM212AQ96EL1 285 aa13.54□□□□□ -0.24
PRPF40A-210ENST00000489741 PHF12Q96QT6 1004 aa13.53□□□□□ -0.24
PRPF40A-210ENST00000489741 NACADO15069 1562 aa13.53□□□□□ -0.24
PRPF40A-210ENST00000489741 SPOCK2Q92563 424 aa13.51□□□□□ -0.25
PRPF40A-210ENST00000489741 GABBR2O75899 941 aa13.5□□□□□ -0.25
PRPF40A-210ENST00000489741 CCDC61Q9Y6R9 512 aa13.48□□□□□ -0.25
PRPF40A-210ENST00000489741 CLCN6P51797 869 aa13.47□□□□□ -0.25
PRPF40A-210ENST00000489741 DCAF8Q5TAQ9 597 aa13.47□□□□□ -0.25
PRPF40A-210ENST00000489741 DCAF8L2P0C7V8 631 aa13.46□□□□□ -0.25
PRPF40A-210ENST00000489741 GSE1Q14687 1217 aa13.41□□□□□ -0.26
PRPF40A-210ENST00000489741 MYO15BQ96JP2 1530 aa13.39□□□□□ -0.27
PRPF40A-210ENST00000489741 CIZ1Q9ULV3 898 aaPredicted RBP13.38□□□□□ -0.27
PRPF40A-210ENST00000489741 GALR2O43603 387 aaPredicted RBP13.37□□□□□ -0.27
PRPF40A-210ENST00000489741 KIF12Q96FN5 646 aa13.37□□□□□ -0.27
PRPF40A-210ENST00000489741 MS4A3Q96HJ5 214 aa13.35□□□□□ -0.27
PRPF40A-210ENST00000489741 MAP3K13O43283 966 aa13.34□□□□□ -0.27
PRPF40A-210ENST00000489741 PYGBP11216 843 aa13.33□□□□□ -0.28
PRPF40A-210ENST00000489741 DCBLD2Q96PD2 775 aa13.31□□□□□ -0.28
PRPF40A-210ENST00000489741 PCDHB13Q9Y5F0 798 aa13.3□□□□□ -0.28
PRPF40A-210ENST00000489741 SGIP1Q9BQI5 828 aa13.25□□□□□ -0.29
PRPF40A-210ENST00000489741 BICRAQ9NZM4 1560 aa13.24□□□□□ -0.29
PRPF40A-210ENST00000489741 IFNL1Q8IU54 200 aa13.22□□□□□ -0.29
PRPF40A-210ENST00000489741 CHRM1P11229 460 aaPredicted RBP13.2□□□□□ -0.3
PRPF40A-210ENST00000489741 ZCCHC6Q5VYS8 1495 aaKnown RBP13.2□□□□□ -0.3
PRPF40A-210ENST00000489741 DCAF1Q9Y4B6 1507 aa13.19□□□□□ -0.3
PRPF40A-210ENST00000489741 POTEIP0CG38 1075 aa13.19□□□□□ -0.3
PRPF40A-210ENST00000489741 TRIM41Q8WV44 630 aa13.19□□□□□ -0.3
PRPF40A-210ENST00000489741 UNC13AQ9UPW8 1703 aa13.19□□□□□ -0.3
PRPF40A-210ENST00000489741 TRPC6Q9Y210 931 aa13.17□□□□□ -0.3
PRPF40A-210ENST00000489741 PCDHB8Q9UN66 801 aa13.16□□□□□ -0.3
PRPF40A-210ENST00000489741 ZNF467Q7Z7K2 595 aaPredicted RBP13.15□□□□□ -0.3
PRPF40A-210ENST00000489741 TIE1P35590 1138 aa13.13□□□□□ -0.31
PRPF40A-210ENST00000489741 ASTLQ6HA08 431 aaPredicted RBP13.12□□□□□ -0.31
PRPF40A-210ENST00000489741 BMP2KQ9NSY1 1161 aaPredicted RBP13.12□□□□□ -0.31
PRPF40A-210ENST00000489741 ATMINO43313 823 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-210ENST00000489741 TMEM106CQ9BVX2 250 aa13.08□□□□□ -0.32
PRPF40A-210ENST00000489741 TTLL13PA6NNM8 815 aa13.07□□□□□ -0.32
PRPF40A-210ENST00000489741 ATN1P54259 1190 aaPredicted RBP13.07□□□□□ -0.32
PRPF40A-210ENST00000489741 SHROOM4Q9ULL8 1493 aa13.07□□□□□ -0.32
PRPF40A-210ENST00000489741 ECM2O94769 699 aaPredicted RBP13.06□□□□□ -0.32
PRPF40A-210ENST00000489741 PKD2Q13563 968 aa13.04□□□□□ -0.32
PRPF40A-210ENST00000489741 PELP1Q8IZL8 1130 aaKnown RBP13.04□□□□□ -0.32
PRPF40A-210ENST00000489741 PSEN1P49768 467 aa13.02□□□□□ -0.33
PRPF40A-210ENST00000489741 PDAP1Q13442 181 aaKnown RBP13.01□□□□□ -0.33
PRPF40A-210ENST00000489741 RIOK3O14730 519 aaKnown RBP13□□□□□ -0.33
PRPF40A-210ENST00000489741 TRIM35Q9UPQ4 493 aa13□□□□□ -0.33
PRPF40A-210ENST00000489741 SLC39A7Q92504 469 aa12.99□□□□□ -0.33
PRPF40A-210ENST00000489741 RNF25Q96BH1 459 aaPredicted RBP12.99□□□□□ -0.33
PRPF40A-210ENST00000489741 METRNQ9UJH8 293 aa12.98□□□□□ -0.33
PRPF40A-210ENST00000489741 C7P10643 843 aa12.97□□□□□ -0.33
PRPF40A-210ENST00000489741 SCRIBQ14160 1630 aa12.95□□□□□ -0.34
PRPF40A-210ENST00000489741 GOLGA2Q08379 1002 aa12.94□□□□□ -0.34
PRPF40A-210ENST00000489741 VGFO15240 615 aaPredicted RBP12.92□□□□□ -0.34
PRPF40A-210ENST00000489741 TAOK2Q9UL54 1235 aa12.92□□□□□ -0.34
PRPF40A-210ENST00000489741 CECR2Q9BXF3 1484 aa12.91□□□□□ -0.34
PRPF40A-210ENST00000489741 RGL2O15211 777 aa12.91□□□□□ -0.34
PRPF40A-210ENST00000489741 CC2D2AQ9P2K1 1620 aa12.91□□□□□ -0.34
PRPF40A-210ENST00000489741 IER5LQ5T953 404 aa12.9□□□□□ -0.34
PRPF40A-210ENST00000489741 SEC24BO95487 1268 aa12.89□□□□□ -0.35
PRPF40A-210ENST00000489741 EIF4G1Q04637 1599 aaKnown RBP12.89□□□□□ -0.35
PRPF40A-210ENST00000489741 LHX8Q68G74 356 aa12.88□□□□□ -0.35
PRPF40A-210ENST00000489741 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.87□□□□□ -0.35
PRPF40A-210ENST00000489741 ZFP91Q96JP5 570 aaPredicted RBP12.87□□□□□ -0.35
PRPF40A-210ENST00000489741 CABP2Q9NPB3 220 aa12.87□□□□□ -0.35
PRPF40A-210ENST00000489741 MKRN3Q13064 507 aaKnown RBP12.86□□□□□ -0.35
PRPF40A-210ENST00000489741 PLCG2P16885 1265 aa12.82□□□□□ -0.36
PRPF40A-210ENST00000489741 COLQQ9Y215 455 aaPredicted RBP12.82□□□□□ -0.36
PRPF40A-210ENST00000489741 POTEFA5A3E0 1075 aa12.79□□□□□ -0.36
PRPF40A-210ENST00000489741 STK25O00506 426 aa12.79□□□□□ -0.36
PRPF40A-210ENST00000489741 BCL11BQ9C0K0 894 aaPredicted RBP12.79□□□□□ -0.36
PRPF40A-210ENST00000489741 IRX5P78411 483 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-210ENST00000489741 STK24Q9Y6E0 443 aa12.78□□□□□ -0.36
PRPF40A-210ENST00000489741 POTEB2H3BUK9 544 aa12.77□□□□□ -0.37
PRPF40A-210ENST00000489741 AMER1Q5JTC6 1135 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-210ENST00000489741 OCEL1Q9H607 264 aa12.77□□□□□ -0.37
PRPF40A-210ENST00000489741 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.76□□□□□ -0.37
PRPF40A-210ENST00000489741 EFCAB3Q8N7B9 438 aa12.75□□□□□ -0.37
PRPF40A-210ENST00000489741 RTN4Q9NQC3 1192 aaKnown RBP12.7□□□□□ -0.38
PRPF40A-210ENST00000489741 MAMSTRQ6ZN01 415 aa12.68□□□□□ -0.38
PRPF40A-210ENST00000489741 PDCD7Q8N8D1 485 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-210ENST00000489741 POTEJP0CG39 1038 aa12.67□□□□□ -0.38
PRPF40A-210ENST00000489741 CHGAP10645 457 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-210ENST00000489741 SOX12O15370 315 aa12.66□□□□□ -0.38
PRPF40A-210ENST00000489741 SCUBE2Q9NQ36 999 aa12.66□□□□□ -0.38
PRPF40A-210ENST00000489741 HS6ST3Q8IZP7 471 aa12.64□□□□□ -0.39
PRPF40A-210ENST00000489741 OTUD5Q96G74 571 aa12.64□□□□□ -0.39
PRPF40A-210ENST00000489741 ILDR1Q86SU0 546 aaPredicted RBP12.63□□□□□ -0.39
PRPF40A-210ENST00000489741 PHF8Q9UPP1 1060 aa12.62□□□□□ -0.39
PRPF40A-210ENST00000489741 G3V3G9 751 aa12.6□□□□□ -0.39
PRPF40A-210ENST00000489741 DPY19L2Q6NUT2 758 aa12.6□□□□□ -0.39
PRPF40A-210ENST00000489741 L3MBTL3Q96JM7 780 aaPredicted RBP12.6□□□□□ -0.39
PRPF40A-210ENST00000489741 NLRP6P59044 892 aa12.59□□□□□ -0.39
PRPF40A-210ENST00000489741 MFRPQ9BY79 579 aa12.56□□□□□ -0.4
PRPF40A-210ENST00000489741 NCAPD3P42695 1498 aa12.56□□□□□ -0.4
PRPF40A-210ENST00000489741 C3orf67Q6ZVT6 689 aa12.55□□□□□ -0.4
PRPF40A-210ENST00000489741 MS4A4AQ96JQ5 239 aa12.54□□□□□ -0.4
PRPF40A-210ENST00000489741 BOLA1Q9Y3E2 137 aa12.54□□□□□ -0.4
PRPF40A-210ENST00000489741 FBXO22Q8NEZ5 403 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms