RNA–Protein interactions for RNA: ENST00000489535.2

SMC6-209, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 2

Gene SMC6, Length 550 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-209ENST00000489535 ASTLQ6HA08 431 aaPredicted RBP17.27■□□□□ 0.36
SMC6-209ENST00000489535 EHMT2Q96KQ7 1210 aa17.26■□□□□ 0.35
SMC6-209ENST00000489535 ATMINO43313 823 aaPredicted RBP17.23■□□□□ 0.35
SMC6-209ENST00000489535 METRNQ9UJH8 293 aa17.23■□□□□ 0.35
SMC6-209ENST00000489535 POTEJP0CG39 1038 aa17.19■□□□□ 0.34
SMC6-209ENST00000489535 SLC39A7Q92504 469 aa17.18■□□□□ 0.34
SMC6-209ENST00000489535 C7P10643 843 aa17.16■□□□□ 0.34
SMC6-209ENST00000489535 PROM2Q8N271 834 aa17.12■□□□□ 0.33
SMC6-209ENST00000489535 TSPYL2Q9H2G4 693 aaPredicted RBP17.1■□□□□ 0.33
SMC6-209ENST00000489535 CCDC61Q9Y6R9 512 aa17.1■□□□□ 0.33
SMC6-209ENST00000489535 ATN1P54259 1190 aaPredicted RBP17.05■□□□□ 0.32
SMC6-209ENST00000489535 MAMSTRQ6ZN01 415 aa17.03■□□□□ 0.32
SMC6-209ENST00000489535 KIF12Q96FN5 646 aa17.02■□□□□ 0.32
SMC6-209ENST00000489535 LCE2DQ5TA82 110 aaPredicted RBP16.99■□□□□ 0.31
SMC6-209ENST00000489535 POTEFA5A3E0 1075 aa16.95■□□□□ 0.3
SMC6-209ENST00000489535 BMP2KQ9NSY1 1161 aaPredicted RBP16.95■□□□□ 0.3
SMC6-209ENST00000489535 TRPC6Q9Y210 931 aa16.95■□□□□ 0.3
SMC6-209ENST00000489535 SCUBE2Q9NQ36 999 aa16.91■□□□□ 0.3
SMC6-209ENST00000489535 MAP3K13O43283 966 aa16.88■□□□□ 0.29
SMC6-209ENST00000489535 TIE1P35590 1138 aa16.85■□□□□ 0.29
SMC6-209ENST00000489535 RASEFQ8IZ41 740 aa16.85■□□□□ 0.29
SMC6-209ENST00000489535 FAM163AQ96GL9 167 aaPredicted RBP16.85■□□□□ 0.29
SMC6-209ENST00000489535 MIER1Q8N108 512 aa16.78■□□□□ 0.28
SMC6-209ENST00000489535 TTLL13PA6NNM8 815 aa16.76■□□□□ 0.27
SMC6-209ENST00000489535 PLEKHG5O94827 1062 aa16.76■□□□□ 0.27
SMC6-209ENST00000489535 COLQQ9Y215 455 aaPredicted RBP16.76■□□□□ 0.27
SMC6-209ENST00000489535 SEC24BO95487 1268 aa16.67■□□□□ 0.26
SMC6-209ENST00000489535 SGIP1Q9BQI5 828 aa16.65■□□□□ 0.26
SMC6-209ENST00000489535 TRIM35Q9UPQ4 493 aa16.64■□□□□ 0.25
SMC6-209ENST00000489535 IER5LQ5T953 404 aa16.63■□□□□ 0.25
SMC6-209ENST00000489535 PCDHB13Q9Y5F0 798 aa16.61■□□□□ 0.25
SMC6-209ENST00000489535 NUBP1P53384 320 aa16.58■□□□□ 0.24
SMC6-209ENST00000489535 PLCD3Q8N3E9 789 aa16.57■□□□□ 0.24
SMC6-209ENST00000489535 IFNL1Q8IU54 200 aa16.54■□□□□ 0.24
SMC6-209ENST00000489535 CDAN1Q8IWY9 1227 aa16.52■□□□□ 0.24
SMC6-209ENST00000489535 ZBTB47Q9UFB7 747 aaPredicted RBP16.48■□□□□ 0.23
SMC6-209ENST00000489535 SLAIN1Q8ND83 568 aa16.47■□□□□ 0.23
SMC6-209ENST00000489535 TMEM106CQ9BVX2 250 aa16.46■□□□□ 0.23
SMC6-209ENST00000489535 ST18O60284 1047 aa16.44■□□□□ 0.22
SMC6-209ENST00000489535 FAM212AQ96EL1 285 aa16.41■□□□□ 0.22
SMC6-209ENST00000489535 PLCG2P16885 1265 aa16.4■□□□□ 0.22
SMC6-209ENST00000489535 IRX5P78411 483 aaPredicted RBP16.4■□□□□ 0.22
SMC6-209ENST00000489535 OCEL1Q9H607 264 aa16.27■□□□□ 0.2
SMC6-209ENST00000489535 PYGBP11216 843 aa16.23■□□□□ 0.19
SMC6-209ENST00000489535 MMRN1Q13201 1228 aa16.22■□□□□ 0.19
SMC6-209ENST00000489535 TMEM121BQ9BXQ6 578 aaPredicted RBP16.21■□□□□ 0.19
SMC6-209ENST00000489535 DCAF8Q5TAQ9 597 aa16.2■□□□□ 0.18
SMC6-209ENST00000489535 PCDHB8Q9UN66 801 aa16.19■□□□□ 0.18
SMC6-209ENST00000489535 FKBP8Q14318 412 aa16.16■□□□□ 0.18
SMC6-209ENST00000489535 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.16■□□□□ 0.18
SMC6-209ENST00000489535 SNPHO15079 494 aa16.14■□□□□ 0.17
SMC6-209ENST00000489535 SPNS2Q8IVW8 549 aa16.14■□□□□ 0.17
SMC6-209ENST00000489535 MARVELD3Q96A59 401 aa16.1■□□□□ 0.17
SMC6-209ENST00000489535 PDCD7Q8N8D1 485 aaKnown RBP16.09■□□□□ 0.17
SMC6-209ENST00000489535 C3orf67Q6ZVT6 689 aa15.97■□□□□ 0.15
SMC6-209ENST00000489535 ZNF467Q7Z7K2 595 aaPredicted RBP15.97■□□□□ 0.15
SMC6-209ENST00000489535 L3MBTL3Q96JM7 780 aaPredicted RBP15.95■□□□□ 0.14
SMC6-209ENST00000489535 FBXO3Q9UK99 471 aa15.95■□□□□ 0.14
SMC6-209ENST00000489535 MKRN3Q13064 507 aaKnown RBP15.94■□□□□ 0.14
SMC6-209ENST00000489535 EMP3P54852 163 aa15.92■□□□□ 0.14
SMC6-209ENST00000489535 GSE1Q14687 1217 aa15.92■□□□□ 0.14
SMC6-209ENST00000489535 GOLGA2Q08379 1002 aa15.91■□□□□ 0.14
SMC6-209ENST00000489535 POTEB3A0JP26 581 aa15.9■□□□□ 0.14
SMC6-209ENST00000489535 POTEBQ6S5H4 581 aa15.9■□□□□ 0.14
SMC6-209ENST00000489535 CHRM1P11229 460 aaPredicted RBP15.89■□□□□ 0.13
SMC6-209ENST00000489535 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.89■□□□□ 0.13
SMC6-209ENST00000489535 KRTAP3-3Q9BYR6 98 aa15.88■□□□□ 0.13
SMC6-209ENST00000489535 KRTAP3-2Q9BYR7 98 aa15.88■□□□□ 0.13
SMC6-209ENST00000489535 PSEN1P49768 467 aa15.86■□□□□ 0.13
SMC6-209ENST00000489535 ILDR1Q86SU0 546 aaPredicted RBP15.86■□□□□ 0.13
SMC6-209ENST00000489535 HS3ST6Q96QI5 342 aa15.86■□□□□ 0.13
SMC6-209ENST00000489535 KLHL34Q8N239 644 aa15.84■□□□□ 0.13
SMC6-209ENST00000489535 VASPP50552 380 aaPredicted RBP15.82■□□□□ 0.12
SMC6-209ENST00000489535 FAM205CA6NFA0 338 aa15.81■□□□□ 0.12
SMC6-209ENST00000489535 DPY19L2Q6NUT2 758 aa15.77■□□□□ 0.12
SMC6-209ENST00000489535 PDAP1Q13442 181 aaKnown RBP15.73■□□□□ 0.11
SMC6-209ENST00000489535 HOXB3P14651 431 aaPredicted RBP15.71■□□□□ 0.11
SMC6-209ENST00000489535 CABP2Q9NPB3 220 aa15.67■□□□□ 0.1
SMC6-209ENST00000489535 BOLA1Q9Y3E2 137 aa15.67■□□□□ 0.1
SMC6-209ENST00000489535 CCDC180Q9P1Z9 1646 aa15.65■□□□□ 0.1
SMC6-209ENST00000489535 HOXB1P14653 301 aaPredicted RBP15.61■□□□□ 0.09
SMC6-209ENST00000489535 G3V3G9 751 aa15.6■□□□□ 0.09
SMC6-209ENST00000489535 ZNF710Q8N1W2 664 aa15.54■□□□□ 0.08
SMC6-209ENST00000489535 SPOCK2Q92563 424 aa15.54■□□□□ 0.08
SMC6-209ENST00000489535 DOK7Q18PE1 504 aa15.53■□□□□ 0.08
SMC6-209ENST00000489535 CIZ1Q9ULV3 898 aaPredicted RBP15.53■□□□□ 0.08
SMC6-209ENST00000489535 IFNLR1Q8IU57 520 aaPredicted RBP15.52■□□□□ 0.08
SMC6-209ENST00000489535 ERBB3P21860 1342 aa15.51■□□□□ 0.07
SMC6-209ENST00000489535 EFCAB3Q8N7B9 438 aa15.44■□□□□ 0.06
SMC6-209ENST00000489535 VARS2Q5ST30 1063 aaKnown RBP15.42■□□□□ 0.06
SMC6-209ENST00000489535 RNF166Q96A37 237 aaPredicted RBP15.42■□□□□ 0.06
SMC6-209ENST00000489535 TMEM92Q6UXU6 159 aa15.41■□□□□ 0.06
SMC6-209ENST00000489535 RIMBP2O15034 1052 aa15.4■□□□□ 0.06
SMC6-209ENST00000489535 MICALL2Q8IY33 904 aa15.37■□□□□ 0.05
SMC6-209ENST00000489535 ZSWIM6Q9HCJ5 1215 aa15.35■□□□□ 0.05
SMC6-209ENST00000489535 ZNF687Q8N1G0 1237 aa15.33■□□□□ 0.04
SMC6-209ENST00000489535 MYT1LQ9UL68 1186 aa15.33■□□□□ 0.04
SMC6-209ENST00000489535 GPR153Q6NV75 609 aa15.32■□□□□ 0.04
SMC6-209ENST00000489535 TRIM41Q8WV44 630 aa15.29■□□□□ 0.04
SMC6-209ENST00000489535 MS4A4AQ96JQ5 239 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms