RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 PHF12Q96QT6 1004 aa11.15□□□□□ -0.62
RFC4-213ENST00000489028 DCAF8Q5TAQ9 597 aa11.13□□□□□ -0.63
RFC4-213ENST00000489028 SP7Q8TDD2 431 aaPredicted RBP11.13□□□□□ -0.63
RFC4-213ENST00000489028 CIZ1Q9ULV3 898 aaPredicted RBP11.09□□□□□ -0.63
RFC4-213ENST00000489028 GSE1Q14687 1217 aa11.08□□□□□ -0.64
RFC4-213ENST00000489028 GABBR2O75899 941 aa11.05□□□□□ -0.64
RFC4-213ENST00000489028 KIF12Q96FN5 646 aa11.05□□□□□ -0.64
RFC4-213ENST00000489028 PYGBP11216 843 aa11.04□□□□□ -0.64
RFC4-213ENST00000489028 MAP3K13O43283 966 aa11.02□□□□□ -0.65
RFC4-213ENST00000489028 GALR2O43603 387 aaPredicted RBP11.01□□□□□ -0.65
RFC4-213ENST00000489028 PKD2Q13563 968 aa11.01□□□□□ -0.65
RFC4-213ENST00000489028 MS4A3Q96HJ5 214 aa11□□□□□ -0.65
RFC4-213ENST00000489028 CHRM1P11229 460 aaPredicted RBP10.97□□□□□ -0.65
RFC4-213ENST00000489028 TRPC6Q9Y210 931 aa10.95□□□□□ -0.66
RFC4-213ENST00000489028 PCDHB13Q9Y5F0 798 aa10.95□□□□□ -0.66
RFC4-213ENST00000489028 CLCN6P51797 869 aa10.94□□□□□ -0.66
RFC4-213ENST00000489028 IFNL1Q8IU54 200 aa10.94□□□□□ -0.66
RFC4-213ENST00000489028 TRIM41Q8WV44 630 aa10.92□□□□□ -0.66
RFC4-213ENST00000489028 PCDHB8Q9UN66 801 aa10.92□□□□□ -0.66
RFC4-213ENST00000489028 RNF25Q96BH1 459 aaPredicted RBP10.91□□□□□ -0.66
RFC4-213ENST00000489028 SGIP1Q9BQI5 828 aa10.91□□□□□ -0.66
RFC4-213ENST00000489028 ECM2O94769 699 aaPredicted RBP10.9□□□□□ -0.66
RFC4-213ENST00000489028 RTN4Q9NQC3 1192 aaKnown RBP10.89□□□□□ -0.67
RFC4-213ENST00000489028 POTEIP0CG38 1075 aa10.87□□□□□ -0.67
RFC4-213ENST00000489028 RGL2O15211 777 aa10.86□□□□□ -0.67
RFC4-213ENST00000489028 ZNF467Q7Z7K2 595 aaPredicted RBP10.84□□□□□ -0.67
RFC4-213ENST00000489028 AMER1Q5JTC6 1135 aaPredicted RBP10.83□□□□□ -0.68
RFC4-213ENST00000489028 BMP2KQ9NSY1 1161 aaPredicted RBP10.83□□□□□ -0.68
RFC4-213ENST00000489028 RIOK3O14730 519 aaKnown RBP10.81□□□□□ -0.68
RFC4-213ENST00000489028 TIE1P35590 1138 aa10.8□□□□□ -0.68
RFC4-213ENST00000489028 DCBLD2Q96PD2 775 aa10.8□□□□□ -0.68
RFC4-213ENST00000489028 ATMINO43313 823 aaPredicted RBP10.79□□□□□ -0.68
RFC4-213ENST00000489028 ASTLQ6HA08 431 aaPredicted RBP10.79□□□□□ -0.68
RFC4-213ENST00000489028 TTLL13PA6NNM8 815 aa10.78□□□□□ -0.68
RFC4-213ENST00000489028 PELP1Q8IZL8 1130 aaKnown RBP10.78□□□□□ -0.68
RFC4-213ENST00000489028 PSEN1P49768 467 aa10.77□□□□□ -0.69
RFC4-213ENST00000489028 ATN1P54259 1190 aaPredicted RBP10.77□□□□□ -0.69
RFC4-213ENST00000489028 TMEM106CQ9BVX2 250 aa10.77□□□□□ -0.69
RFC4-213ENST00000489028 PDAP1Q13442 181 aaKnown RBP10.76□□□□□ -0.69
RFC4-213ENST00000489028 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.72□□□□□ -0.69
RFC4-213ENST00000489028 VGFO15240 615 aaPredicted RBP10.72□□□□□ -0.69
RFC4-213ENST00000489028 ZFP91Q96JP5 570 aaPredicted RBP10.72□□□□□ -0.69
RFC4-213ENST00000489028 TRIM35Q9UPQ4 493 aa10.7□□□□□ -0.7
RFC4-213ENST00000489028 BCL11BQ9C0K0 894 aaPredicted RBP10.64□□□□□ -0.71
RFC4-213ENST00000489028 CABP2Q9NPB3 220 aa10.64□□□□□ -0.71
RFC4-213ENST00000489028 STK25O00506 426 aa10.63□□□□□ -0.71
RFC4-213ENST00000489028 TAOK2Q9UL54 1235 aa10.62□□□□□ -0.71
RFC4-213ENST00000489028 POTEFA5A3E0 1075 aa10.61□□□□□ -0.71
RFC4-213ENST00000489028 SLC39A7Q92504 469 aa10.61□□□□□ -0.71
RFC4-213ENST00000489028 METRNQ9UJH8 293 aa10.61□□□□□ -0.71
RFC4-213ENST00000489028 STK24Q9Y6E0 443 aa10.61□□□□□ -0.71
RFC4-213ENST00000489028 DCAF8L2P0C7V8 631 aa10.6□□□□□ -0.71
RFC4-213ENST00000489028 HS6ST3Q8IZP7 471 aa10.59□□□□□ -0.71
RFC4-213ENST00000489028 EFCAB3Q8N7B9 438 aa10.59□□□□□ -0.71
RFC4-213ENST00000489028 COLQQ9Y215 455 aaPredicted RBP10.59□□□□□ -0.71
RFC4-213ENST00000489028 C7P10643 843 aa10.58□□□□□ -0.72
RFC4-213ENST00000489028 CHGAP10645 457 aaKnown RBP10.58□□□□□ -0.72
RFC4-213ENST00000489028 IER5LQ5T953 404 aa10.57□□□□□ -0.72
RFC4-213ENST00000489028 IRX5P78411 483 aaPredicted RBP10.56□□□□□ -0.72
RFC4-213ENST00000489028 GOLGA2Q08379 1002 aa10.56□□□□□ -0.72
RFC4-213ENST00000489028 MKRN3Q13064 507 aaKnown RBP10.55□□□□□ -0.72
RFC4-213ENST00000489028 POTEB2H3BUK9 544 aa10.54□□□□□ -0.72
RFC4-213ENST00000489028 ILDR1Q86SU0 546 aaPredicted RBP10.52□□□□□ -0.73
RFC4-213ENST00000489028 PDCD7Q8N8D1 485 aaKnown RBP10.52□□□□□ -0.73
RFC4-213ENST00000489028 SEC24BO95487 1268 aa10.5□□□□□ -0.73
RFC4-213ENST00000489028 NKX1-1Q15270 411 aaPredicted RBP10.5□□□□□ -0.73
RFC4-213ENST00000489028 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.5□□□□□ -0.73
RFC4-213ENST00000489028 PHF8Q9UPP1 1060 aa10.5□□□□□ -0.73
RFC4-213ENST00000489028 POTEJP0CG39 1038 aa10.49□□□□□ -0.73
RFC4-213ENST00000489028 MFRPQ9BY79 579 aa10.49□□□□□ -0.73
RFC4-213ENST00000489028 OCEL1Q9H607 264 aa10.49□□□□□ -0.73
RFC4-213ENST00000489028 PLCG2P16885 1265 aa10.48□□□□□ -0.73
RFC4-213ENST00000489028 MS4A4AQ96JQ5 239 aa10.48□□□□□ -0.73
RFC4-213ENST00000489028 DNAJC5Q9H3Z4 198 aa10.48□□□□□ -0.73
RFC4-213ENST00000489028 SOX12O15370 315 aa10.47□□□□□ -0.73
RFC4-213ENST00000489028 DPY19L2Q6NUT2 758 aa10.47□□□□□ -0.73
RFC4-213ENST00000489028 FBXO22Q8NEZ5 403 aa10.47□□□□□ -0.73
RFC4-213ENST00000489028 LHX8Q68G74 356 aa10.44□□□□□ -0.74
RFC4-213ENST00000489028 NLRP6P59044 892 aa10.41□□□□□ -0.74
RFC4-213ENST00000489028 BBXQ8WY36 941 aaPredicted RBP10.37□□□□□ -0.75
RFC4-213ENST00000489028 GTPBP6O43824 516 aaPredicted RBP10.36□□□□□ -0.75
RFC4-213ENST00000489028 PPP1R37O75864 691 aa10.36□□□□□ -0.75
RFC4-213ENST00000489028 OTUD5Q96G74 571 aa10.35□□□□□ -0.75
RFC4-213ENST00000489028 BOLA1Q9Y3E2 137 aa10.33□□□□□ -0.76
RFC4-213ENST00000489028 L3MBTL3Q96JM7 780 aaPredicted RBP10.32□□□□□ -0.76
RFC4-213ENST00000489028 MICALL2Q8IY33 904 aa10.31□□□□□ -0.76
RFC4-213ENST00000489028 TMEM121BQ9BXQ6 578 aaPredicted RBP10.31□□□□□ -0.76
RFC4-213ENST00000489028 MAMSTRQ6ZN01 415 aa10.27□□□□□ -0.77
RFC4-213ENST00000489028 SCUBE2Q9NQ36 999 aa10.26□□□□□ -0.77
RFC4-213ENST00000489028 RYDENQ9NUL5 291 aaKnown RBP10.25□□□□□ -0.77
RFC4-213ENST00000489028 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.25□□□□□ -0.77
RFC4-213ENST00000489028 PAXIP1Q6ZW49 1069 aaPredicted RBP10.24□□□□□ -0.77
RFC4-213ENST00000489028 G3V3G9 751 aa10.23□□□□□ -0.77
RFC4-213ENST00000489028 TMEM92Q6UXU6 159 aa10.23□□□□□ -0.77
RFC4-213ENST00000489028 C3orf67Q6ZVT6 689 aa10.23□□□□□ -0.77
RFC4-213ENST00000489028 SPRYD3Q8NCJ5 442 aa10.22□□□□□ -0.77
RFC4-213ENST00000489028 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.22□□□□□ -0.77
RFC4-213ENST00000489028 CFAP44Q96MT7 982 aa10.21□□□□□ -0.77
RFC4-213ENST00000489028 SLAIN1Q8ND83 568 aa10.2□□□□□ -0.78
RFC4-213ENST00000489028 CADPS2Q86UW7 1296 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms