RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 C7P10643 843 aa14.69□□□□□ -0.06
SMC4-220ENST00000488017 SLC39A7Q92504 469 aa14.69□□□□□ -0.06
SMC4-220ENST00000488017 POTEJP0CG39 1038 aa14.67□□□□□ -0.06
SMC4-220ENST00000488017 ATMINO43313 823 aaPredicted RBP14.66□□□□□ -0.06
SMC4-220ENST00000488017 MAMSTRQ6ZN01 415 aa14.66□□□□□ -0.06
SMC4-220ENST00000488017 SPDYE4A6NLX3 237 aa14.65□□□□□ -0.06
SMC4-220ENST00000488017 MS4A3Q96HJ5 214 aa14.65□□□□□ -0.06
SMC4-220ENST00000488017 LCE2DQ5TA82 110 aaPredicted RBP14.57□□□□□ -0.08
SMC4-220ENST00000488017 SCUBE2Q9NQ36 999 aa14.51□□□□□ -0.09
SMC4-220ENST00000488017 FAM163AQ96GL9 167 aaPredicted RBP14.5□□□□□ -0.09
SMC4-220ENST00000488017 ATN1P54259 1190 aaPredicted RBP14.47□□□□□ -0.09
SMC4-220ENST00000488017 CCDC61Q9Y6R9 512 aa14.43□□□□□ -0.1
SMC4-220ENST00000488017 TSPYL2Q9H2G4 693 aaPredicted RBP14.42□□□□□ -0.1
SMC4-220ENST00000488017 POTEFA5A3E0 1075 aa14.4□□□□□ -0.1
SMC4-220ENST00000488017 KIF12Q96FN5 646 aa14.39□□□□□ -0.11
SMC4-220ENST00000488017 BMP2KQ9NSY1 1161 aaPredicted RBP14.37□□□□□ -0.11
SMC4-220ENST00000488017 TIE1P35590 1138 aa14.3□□□□□ -0.12
SMC4-220ENST00000488017 TRPC6Q9Y210 931 aa14.29□□□□□ -0.12
SMC4-220ENST00000488017 MAP3K13O43283 966 aa14.24□□□□□ -0.13
SMC4-220ENST00000488017 CDAN1Q8IWY9 1227 aa14.24□□□□□ -0.13
SMC4-220ENST00000488017 PROM2Q8N271 834 aa14.24□□□□□ -0.13
SMC4-220ENST00000488017 COLQQ9Y215 455 aaPredicted RBP14.23□□□□□ -0.13
SMC4-220ENST00000488017 SEC24BO95487 1268 aa14.21□□□□□ -0.13
SMC4-220ENST00000488017 TTLL13PA6NNM8 815 aa14.19□□□□□ -0.14
SMC4-220ENST00000488017 IER5LQ5T953 404 aa14.15□□□□□ -0.14
SMC4-220ENST00000488017 RASEFQ8IZ41 740 aa14.14□□□□□ -0.15
SMC4-220ENST00000488017 PLEKHG5O94827 1062 aa14.1□□□□□ -0.15
SMC4-220ENST00000488017 SGIP1Q9BQI5 828 aa14.09□□□□□ -0.15
SMC4-220ENST00000488017 TRIM35Q9UPQ4 493 aa14.09□□□□□ -0.15
SMC4-220ENST00000488017 ST18O60284 1047 aa14.07□□□□□ -0.16
SMC4-220ENST00000488017 SLAIN1Q8ND83 568 aa14.06□□□□□ -0.16
SMC4-220ENST00000488017 MIER1Q8N108 512 aa14.05□□□□□ -0.16
SMC4-220ENST00000488017 PCDHB13Q9Y5F0 798 aa14.01□□□□□ -0.17
SMC4-220ENST00000488017 MMRN1Q13201 1228 aa13.95□□□□□ -0.18
SMC4-220ENST00000488017 PLCG2P16885 1265 aa13.93□□□□□ -0.18
SMC4-220ENST00000488017 IFNL1Q8IU54 200 aa13.92□□□□□ -0.18
SMC4-220ENST00000488017 SPNS2Q8IVW8 549 aa13.92□□□□□ -0.18
SMC4-220ENST00000488017 TMEM121BQ9BXQ6 578 aaPredicted RBP13.92□□□□□ -0.18
SMC4-220ENST00000488017 TMEM106CQ9BVX2 250 aa13.9□□□□□ -0.18
SMC4-220ENST00000488017 IRX5P78411 483 aaPredicted RBP13.88□□□□□ -0.19
SMC4-220ENST00000488017 NUBP1P53384 320 aa13.87□□□□□ -0.19
SMC4-220ENST00000488017 PLCD3Q8N3E9 789 aa13.85□□□□□ -0.19
SMC4-220ENST00000488017 ZBTB47Q9UFB7 747 aaPredicted RBP13.84□□□□□ -0.19
SMC4-220ENST00000488017 SNPHO15079 494 aa13.83□□□□□ -0.2
SMC4-220ENST00000488017 OCEL1Q9H607 264 aa13.8□□□□□ -0.2
SMC4-220ENST00000488017 FAM212AQ96EL1 285 aa13.77□□□□□ -0.21
SMC4-220ENST00000488017 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.76□□□□□ -0.21
SMC4-220ENST00000488017 MARVELD3Q96A59 401 aa13.75□□□□□ -0.21
SMC4-220ENST00000488017 FKBP8Q14318 412 aa13.65□□□□□ -0.22
SMC4-220ENST00000488017 EMP3P54852 163 aa13.6□□□□□ -0.23
SMC4-220ENST00000488017 KRTAP3-3Q9BYR6 98 aa13.58□□□□□ -0.24
SMC4-220ENST00000488017 KRTAP3-2Q9BYR7 98 aa13.58□□□□□ -0.24
SMC4-220ENST00000488017 PYGBP11216 843 aa13.57□□□□□ -0.24
SMC4-220ENST00000488017 C3orf67Q6ZVT6 689 aa13.56□□□□□ -0.24
SMC4-220ENST00000488017 PDCD7Q8N8D1 485 aaKnown RBP13.56□□□□□ -0.24
SMC4-220ENST00000488017 PCDHB8Q9UN66 801 aa13.56□□□□□ -0.24
SMC4-220ENST00000488017 DCAF8Q5TAQ9 597 aa13.55□□□□□ -0.24
SMC4-220ENST00000488017 POTEB3A0JP26 581 aa13.54□□□□□ -0.24
SMC4-220ENST00000488017 POTEBQ6S5H4 581 aa13.54□□□□□ -0.24
SMC4-220ENST00000488017 HS3ST6Q96QI5 342 aa13.54□□□□□ -0.24
SMC4-220ENST00000488017 L3MBTL3Q96JM7 780 aaPredicted RBP13.53□□□□□ -0.24
SMC4-220ENST00000488017 FAM205CA6NFA0 338 aa13.5□□□□□ -0.25
SMC4-220ENST00000488017 FBXO3Q9UK99 471 aa13.5□□□□□ -0.25
SMC4-220ENST00000488017 MKRN3Q13064 507 aaKnown RBP13.45□□□□□ -0.26
SMC4-220ENST00000488017 GOLGA2Q08379 1002 aa13.42□□□□□ -0.26
SMC4-220ENST00000488017 ZNF467Q7Z7K2 595 aaPredicted RBP13.41□□□□□ -0.26
SMC4-220ENST00000488017 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.39□□□□□ -0.271e-6■■■□□ 16.6
SMC4-220ENST00000488017 ILDR1Q86SU0 546 aaPredicted RBP13.35□□□□□ -0.27
SMC4-220ENST00000488017 CHRM1P11229 460 aaPredicted RBP13.31□□□□□ -0.28
SMC4-220ENST00000488017 HOXB3P14651 431 aaPredicted RBP13.31□□□□□ -0.28
SMC4-220ENST00000488017 GSE1Q14687 1217 aa13.31□□□□□ -0.28
SMC4-220ENST00000488017 PSEN1P49768 467 aa13.29□□□□□ -0.28
SMC4-220ENST00000488017 VASPP50552 380 aaPredicted RBP13.29□□□□□ -0.28
SMC4-220ENST00000488017 HOXB1P14653 301 aaPredicted RBP13.28□□□□□ -0.28
SMC4-220ENST00000488017 DPY19L2Q6NUT2 758 aa13.26□□□□□ -0.29
SMC4-220ENST00000488017 KLHL34Q8N239 644 aa13.26□□□□□ -0.29
SMC4-220ENST00000488017 RNF166Q96A37 237 aaPredicted RBP13.24□□□□□ -0.29
SMC4-220ENST00000488017 BOLA1Q9Y3E2 137 aa13.23□□□□□ -0.29
SMC4-220ENST00000488017 ZNF710Q8N1W2 664 aa13.22□□□□□ -0.29
SMC4-220ENST00000488017 ERBB3P21860 1342 aa13.21□□□□□ -0.29
SMC4-220ENST00000488017 G3V3G9 751 aa13.2□□□□□ -0.3
SMC4-220ENST00000488017 DOK7Q18PE1 504 aa13.2□□□□□ -0.3
SMC4-220ENST00000488017 PDAP1Q13442 181 aaKnown RBP13.18□□□□□ -0.3
SMC4-220ENST00000488017 MYT1LQ9UL68 1186 aa13.15□□□□□ -0.3
SMC4-220ENST00000488017 CABP2Q9NPB3 220 aa13.12□□□□□ -0.31
SMC4-220ENST00000488017 VARS2Q5ST30 1063 aaKnown RBP13.11□□□□□ -0.31
SMC4-220ENST00000488017 RIMBP2O15034 1052 aa13.1□□□□□ -0.31
SMC4-220ENST00000488017 ZNF687Q8N1G0 1237 aa13.06□□□□□ -0.32
SMC4-220ENST00000488017 SPOCK2Q92563 424 aa13.05□□□□□ -0.32
SMC4-220ENST00000488017 PTGER2P43116 358 aa13.04□□□□□ -0.32
SMC4-220ENST00000488017 ZSWIM6Q9HCJ5 1215 aa13.04□□□□□ -0.32
SMC4-220ENST00000488017 IFNLR1Q8IU57 520 aaPredicted RBP13.02□□□□□ -0.33
SMC4-220ENST00000488017 GPR153Q6NV75 609 aa12.97□□□□□ -0.33
SMC4-220ENST00000488017 CIZ1Q9ULV3 898 aaPredicted RBP12.97□□□□□ -0.33
SMC4-220ENST00000488017 TMEM92Q6UXU6 159 aa12.93□□□□□ -0.34
SMC4-220ENST00000488017 MICALL2Q8IY33 904 aa12.91□□□□□ -0.34
SMC4-220ENST00000488017 EFCAB3Q8N7B9 438 aa12.9□□□□□ -0.34
SMC4-220ENST00000488017 TRIM41Q8WV44 630 aa12.88□□□□□ -0.35
SMC4-220ENST00000488017 ANKRD13DQ6ZTN6 518 aa12.87□□□□□ -0.35
SMC4-220ENST00000488017 LSM11P83369 360 aaKnown RBP eCLIP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms