RNA–Protein interactions for RNA: ENST00000487709.1

HMGB1P36-201, Transcript of high mobility group box 1 pseudogene 36, humanhuman

BASIC

Gene HMGB1P36, Length 576 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P36-201ENST00000487709 OTUD5Q96G74 571 aa12.78□□□□□ -0.36
HMGB1P36-201ENST00000487709 ATMINO43313 823 aaPredicted RBP12.77□□□□□ -0.37
HMGB1P36-201ENST00000487709 ASTLQ6HA08 431 aaPredicted RBP12.77□□□□□ -0.37
HMGB1P36-201ENST00000487709 METRNQ9UJH8 293 aa12.76□□□□□ -0.37
HMGB1P36-201ENST00000487709 RASEFQ8IZ41 740 aa12.73□□□□□ -0.37
HMGB1P36-201ENST00000487709 PLCD3Q8N3E9 789 aa12.73□□□□□ -0.37
HMGB1P36-201ENST00000487709 KIF12Q96FN5 646 aa12.72□□□□□ -0.37
HMGB1P36-201ENST00000487709 SLC39A7Q92504 469 aa12.71□□□□□ -0.37
HMGB1P36-201ENST00000487709 C7P10643 843 aa12.68□□□□□ -0.38
HMGB1P36-201ENST00000487709 ATN1P54259 1190 aaPredicted RBP12.68□□□□□ -0.38
HMGB1P36-201ENST00000487709 MAP3K13O43283 966 aa12.67□□□□□ -0.38
HMGB1P36-201ENST00000487709 FKBP8Q14318 412 aa12.67□□□□□ -0.38
HMGB1P36-201ENST00000487709 TRPC6Q9Y210 931 aa12.67□□□□□ -0.38
HMGB1P36-201ENST00000487709 BMP2KQ9NSY1 1161 aaPredicted RBP12.64□□□□□ -0.39
HMGB1P36-201ENST00000487709 POTEJP0CG39 1038 aa12.61□□□□□ -0.39
HMGB1P36-201ENST00000487709 ZBTB47Q9UFB7 747 aaPredicted RBP12.59□□□□□ -0.39
HMGB1P36-201ENST00000487709 PLSCR2Q9NRY7 297 aa12.58□□□□□ -0.4
HMGB1P36-201ENST00000487709 TIE1P35590 1138 aa12.57□□□□□ -0.4
HMGB1P36-201ENST00000487709 NUBP1P53384 320 aa12.55□□□□□ -0.4
HMGB1P36-201ENST00000487709 MAMSTRQ6ZN01 415 aa12.54□□□□□ -0.4
HMGB1P36-201ENST00000487709 PCDHB13Q9Y5F0 798 aa12.54□□□□□ -0.4
HMGB1P36-201ENST00000487709 TTLL13PA6NNM8 815 aa12.53□□□□□ -0.4
HMGB1P36-201ENST00000487709 POTEFA5A3E0 1075 aa12.51□□□□□ -0.41
HMGB1P36-201ENST00000487709 POTEMA6NI47 508 aa12.5□□□□□ -0.41
HMGB1P36-201ENST00000487709 FAM212AQ96EL1 285 aa12.5□□□□□ -0.41
HMGB1P36-201ENST00000487709 SCUBE2Q9NQ36 999 aa12.5□□□□□ -0.41
HMGB1P36-201ENST00000487709 POTEGQ6S5H5 508 aa12.48□□□□□ -0.41
HMGB1P36-201ENST00000487709 SEC24BO95487 1268 aa12.47□□□□□ -0.41
HMGB1P36-201ENST00000487709 SGIP1Q9BQI5 828 aa12.46□□□□□ -0.41
HMGB1P36-201ENST00000487709 TRIM35Q9UPQ4 493 aa12.46□□□□□ -0.41
HMGB1P36-201ENST00000487709 COLQQ9Y215 455 aaPredicted RBP12.46□□□□□ -0.41
HMGB1P36-201ENST00000487709 IFNL1Q8IU54 200 aa12.45□□□□□ -0.42
HMGB1P36-201ENST00000487709 TMEM106CQ9BVX2 250 aa12.4□□□□□ -0.42
HMGB1P36-201ENST00000487709 DCAF8Q5TAQ9 597 aa12.39□□□□□ -0.43
HMGB1P36-201ENST00000487709 FAM163AQ96GL9 167 aaPredicted RBP12.39□□□□□ -0.43
HMGB1P36-201ENST00000487709 FBXO3Q9UK99 471 aa12.39□□□□□ -0.43
HMGB1P36-201ENST00000487709 IER5LQ5T953 404 aa12.37□□□□□ -0.43
HMGB1P36-201ENST00000487709 PYGBP11216 843 aa12.36□□□□□ -0.43
HMGB1P36-201ENST00000487709 LCE2DQ5TA82 110 aaPredicted RBP12.34□□□□□ -0.43
HMGB1P36-201ENST00000487709 PLCG2P16885 1265 aa12.3□□□□□ -0.44
HMGB1P36-201ENST00000487709 KLHL34Q8N239 644 aa12.3□□□□□ -0.44
HMGB1P36-201ENST00000487709 PCDHB8Q9UN66 801 aa12.29□□□□□ -0.44
HMGB1P36-201ENST00000487709 VASPP50552 380 aaPredicted RBP12.27□□□□□ -0.45
HMGB1P36-201ENST00000487709 SLAIN1Q8ND83 568 aa12.24□□□□□ -0.45
HMGB1P36-201ENST00000487709 IRX5P78411 483 aaPredicted RBP12.23□□□□□ -0.45
HMGB1P36-201ENST00000487709 PCDH10Q9P2E7 1040 aa12.22□□□□□ -0.45
HMGB1P36-201ENST00000487709 GSE1Q14687 1217 aa12.18□□□□□ -0.46
HMGB1P36-201ENST00000487709 OCEL1Q9H607 264 aa12.17□□□□□ -0.46
HMGB1P36-201ENST00000487709 ZNF467Q7Z7K2 595 aaPredicted RBP12.14□□□□□ -0.47
HMGB1P36-201ENST00000487709 ST18O60284 1047 aa12.1□□□□□ -0.47
HMGB1P36-201ENST00000487709 GOLGA2Q08379 1002 aa12.1□□□□□ -0.47
HMGB1P36-201ENST00000487709 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.08□□□□□ -0.48
HMGB1P36-201ENST00000487709 MKRN3Q13064 507 aaKnown RBP12.07□□□□□ -0.48
HMGB1P36-201ENST00000487709 CDAN1Q8IWY9 1227 aa12.06□□□□□ -0.48
HMGB1P36-201ENST00000487709 CHRM1P11229 460 aaPredicted RBP12.05□□□□□ -0.48
HMGB1P36-201ENST00000487709 PSEN1P49768 467 aa12.05□□□□□ -0.48
HMGB1P36-201ENST00000487709 PDCD7Q8N8D1 485 aaKnown RBP12.04□□□□□ -0.48
HMGB1P36-201ENST00000487709 CIZ1Q9ULV3 898 aaPredicted RBP12.04□□□□□ -0.48
HMGB1P36-201ENST00000487709 IFNLR1Q8IU57 520 aaPredicted RBP12.03□□□□□ -0.48
HMGB1P36-201ENST00000487709 SPOCK2Q92563 424 aa12.03□□□□□ -0.48
HMGB1P36-201ENST00000487709 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.01□□□□□ -0.49
HMGB1P36-201ENST00000487709 C3orf67Q6ZVT6 689 aa12□□□□□ -0.49
HMGB1P36-201ENST00000487709 PDAP1Q13442 181 aaKnown RBP11.98□□□□□ -0.49
HMGB1P36-201ENST00000487709 SNPHO15079 494 aa11.96□□□□□ -0.49
HMGB1P36-201ENST00000487709 L3MBTL3Q96JM7 780 aaPredicted RBP11.96□□□□□ -0.49
HMGB1P36-201ENST00000487709 MARVELD3Q96A59 401 aa11.94□□□□□ -0.5
HMGB1P36-201ENST00000487709 CABP2Q9NPB3 220 aa11.94□□□□□ -0.5
HMGB1P36-201ENST00000487709 TMEM121BQ9BXQ6 578 aaPredicted RBP11.93□□□□□ -0.5
HMGB1P36-201ENST00000487709 DPY19L2Q6NUT2 758 aa11.9□□□□□ -0.5
HMGB1P36-201ENST00000487709 ILDR1Q86SU0 546 aaPredicted RBP11.85□□□□□ -0.51
HMGB1P36-201ENST00000487709 G3V3G9 751 aa11.84□□□□□ -0.51
HMGB1P36-201ENST00000487709 EMP3P54852 163 aa11.83□□□□□ -0.52
HMGB1P36-201ENST00000487709 BOLA1Q9Y3E2 137 aa11.82□□□□□ -0.52
HMGB1P36-201ENST00000487709 SPNS2Q8IVW8 549 aa11.76□□□□□ -0.53
HMGB1P36-201ENST00000487709 EFCAB3Q8N7B9 438 aa11.76□□□□□ -0.53
HMGB1P36-201ENST00000487709 TRIM41Q8WV44 630 aa11.76□□□□□ -0.53
HMGB1P36-201ENST00000487709 FAM205CA6NFA0 338 aa11.75□□□□□ -0.53
HMGB1P36-201ENST00000487709 MMRN1Q13201 1228 aa11.74□□□□□ -0.53
HMGB1P36-201ENST00000487709 HS3ST6Q96QI5 342 aa11.73□□□□□ -0.53
HMGB1P36-201ENST00000487709 POTEB3A0JP26 581 aa11.71□□□□□ -0.53
HMGB1P36-201ENST00000487709 POTEBQ6S5H4 581 aa11.71□□□□□ -0.53
HMGB1P36-201ENST00000487709 HOXB3P14651 431 aaPredicted RBP11.69□□□□□ -0.54
HMGB1P36-201ENST00000487709 RIOK3O14730 519 aaKnown RBP11.67□□□□□ -0.54
HMGB1P36-201ENST00000487709 ZNF710Q8N1W2 664 aa11.67□□□□□ -0.54
HMGB1P36-201ENST00000487709 RNF25Q96BH1 459 aaPredicted RBP11.67□□□□□ -0.54
HMGB1P36-201ENST00000487709 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.65□□□□□ -0.54
HMGB1P36-201ENST00000487709 ZFP91Q96JP5 570 aaPredicted RBP11.65□□□□□ -0.54
HMGB1P36-201ENST00000487709 KRTAP3-3Q9BYR6 98 aa11.65□□□□□ -0.54
HMGB1P36-201ENST00000487709 KRTAP3-2Q9BYR7 98 aa11.65□□□□□ -0.54
HMGB1P36-201ENST00000487709 MICALL2Q8IY33 904 aa11.63□□□□□ -0.55
HMGB1P36-201ENST00000487709 DOK7Q18PE1 504 aa11.62□□□□□ -0.55
HMGB1P36-201ENST00000487709 VGFO15240 615 aaPredicted RBP11.61□□□□□ -0.55
HMGB1P36-201ENST00000487709 HOXB1P14653 301 aaPredicted RBP11.6□□□□□ -0.55
HMGB1P36-201ENST00000487709 PHF8Q9UPP1 1060 aa11.6□□□□□ -0.55
HMGB1P36-201ENST00000487709 MS4A4AQ96JQ5 239 aa11.59□□□□□ -0.55
HMGB1P36-201ENST00000487709 SOX12O15370 315 aa11.58□□□□□ -0.56
HMGB1P36-201ENST00000487709 TMEM92Q6UXU6 159 aa11.58□□□□□ -0.56
HMGB1P36-201ENST00000487709 ERBB3P21860 1342 aa11.58□□□□□ -0.56
HMGB1P36-201ENST00000487709 RIMBP2O15034 1052 aa11.57□□□□□ -0.56
HMGB1P36-201ENST00000487709 VARS2Q5ST30 1063 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms