RNA–Protein interactions for RNA: ENST00000487689.1

UBR3-211, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 3

Gene UBR3, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-211ENST00000487689 POTEMA6NI47 508 aa14.29□□□□□ -0.12
UBR3-211ENST00000487689 SLC39A7Q92504 469 aa14.28□□□□□ -0.12
UBR3-211ENST00000487689 TSPYL2Q9H2G4 693 aaPredicted RBP14.27□□□□□ -0.13
UBR3-211ENST00000487689 C7P10643 843 aa14.25□□□□□ -0.13
UBR3-211ENST00000487689 POTEGQ6S5H5 508 aa14.25□□□□□ -0.13
UBR3-211ENST00000487689 POTEJP0CG39 1038 aa14.23□□□□□ -0.13
UBR3-211ENST00000487689 PROM2Q8N271 834 aa14.21□□□□□ -0.13
UBR3-211ENST00000487689 CCDC61Q9Y6R9 512 aa14.2□□□□□ -0.14
UBR3-211ENST00000487689 ATN1P54259 1190 aaPredicted RBP14.17□□□□□ -0.14
UBR3-211ENST00000487689 MAMSTRQ6ZN01 415 aa14.15□□□□□ -0.14
UBR3-211ENST00000487689 KIF12Q96FN5 646 aa14.14□□□□□ -0.15
UBR3-211ENST00000487689 BMP2KQ9NSY1 1161 aaPredicted RBP14.08□□□□□ -0.16
UBR3-211ENST00000487689 TRPC6Q9Y210 931 aa14.08□□□□□ -0.16
UBR3-211ENST00000487689 SCUBE2Q9NQ36 999 aa14.07□□□□□ -0.16
UBR3-211ENST00000487689 MAP3K13O43283 966 aa14.05□□□□□ -0.16
UBR3-211ENST00000487689 POTEFA5A3E0 1075 aa14.04□□□□□ -0.16
UBR3-211ENST00000487689 MIER1Q8N108 512 aa14.04□□□□□ -0.16
UBR3-211ENST00000487689 PCDH10Q9P2E7 1040 aa14.04□□□□□ -0.16
UBR3-211ENST00000487689 PLEKHG5O94827 1062 aa14.03□□□□□ -0.16
UBR3-211ENST00000487689 FAM163AQ96GL9 167 aaPredicted RBP14.03□□□□□ -0.16
UBR3-211ENST00000487689 LCE2DQ5TA82 110 aaPredicted RBP14.02□□□□□ -0.17
UBR3-211ENST00000487689 RASEFQ8IZ41 740 aa14.02□□□□□ -0.17
UBR3-211ENST00000487689 TIE1P35590 1138 aa14□□□□□ -0.17
UBR3-211ENST00000487689 TTLL13PA6NNM8 815 aa13.93□□□□□ -0.18
UBR3-211ENST00000487689 COLQQ9Y215 455 aaPredicted RBP13.92□□□□□ -0.18
UBR3-211ENST00000487689 SEC24BO95487 1268 aa13.91□□□□□ -0.18
UBR3-211ENST00000487689 PLCD3Q8N3E9 789 aa13.88□□□□□ -0.19
UBR3-211ENST00000487689 PCDHB13Q9Y5F0 798 aa13.86□□□□□ -0.19
UBR3-211ENST00000487689 TRIM35Q9UPQ4 493 aa13.84□□□□□ -0.19
UBR3-211ENST00000487689 SGIP1Q9BQI5 828 aa13.82□□□□□ -0.2
UBR3-211ENST00000487689 IER5LQ5T953 404 aa13.81□□□□□ -0.2
UBR3-211ENST00000487689 NUBP1P53384 320 aa13.79□□□□□ -0.2
UBR3-211ENST00000487689 ZBTB47Q9UFB7 747 aaPredicted RBP13.77□□□□□ -0.21
UBR3-211ENST00000487689 IFNL1Q8IU54 200 aa13.76□□□□□ -0.21
UBR3-211ENST00000487689 TMEM106CQ9BVX2 250 aa13.72□□□□□ -0.21
UBR3-211ENST00000487689 CDAN1Q8IWY9 1227 aa13.71□□□□□ -0.21
UBR3-211ENST00000487689 SLAIN1Q8ND83 568 aa13.71□□□□□ -0.21
UBR3-211ENST00000487689 FAM212AQ96EL1 285 aa13.7□□□□□ -0.22
UBR3-211ENST00000487689 PLCG2P16885 1265 aa13.67□□□□□ -0.22
UBR3-211ENST00000487689 ST18O60284 1047 aa13.64□□□□□ -0.23
UBR3-211ENST00000487689 IRX5P78411 483 aaPredicted RBP13.61□□□□□ -0.23
UBR3-211ENST00000487689 PYGBP11216 843 aa13.55□□□□□ -0.24
UBR3-211ENST00000487689 DCAF8Q5TAQ9 597 aa13.55□□□□□ -0.24
UBR3-211ENST00000487689 FKBP8Q14318 412 aa13.54□□□□□ -0.24
UBR3-211ENST00000487689 OCEL1Q9H607 264 aa13.54□□□□□ -0.24
UBR3-211ENST00000487689 PCDHB8Q9UN66 801 aa13.5□□□□□ -0.25
UBR3-211ENST00000487689 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.47□□□□□ -0.25
UBR3-211ENST00000487689 SNPHO15079 494 aa13.44□□□□□ -0.26
UBR3-211ENST00000487689 TMEM121BQ9BXQ6 578 aaPredicted RBP13.44□□□□□ -0.26
UBR3-211ENST00000487689 MARVELD3Q96A59 401 aa13.4□□□□□ -0.26
UBR3-211ENST00000487689 SPNS2Q8IVW8 549 aa13.39□□□□□ -0.27
UBR3-211ENST00000487689 MMRN1Q13201 1228 aa13.38□□□□□ -0.27
UBR3-211ENST00000487689 PDCD7Q8N8D1 485 aaKnown RBP13.36□□□□□ -0.27
UBR3-211ENST00000487689 FBXO3Q9UK99 471 aa13.35□□□□□ -0.27
UBR3-211ENST00000487689 GOLGA2Q08379 1002 aa13.32□□□□□ -0.28
UBR3-211ENST00000487689 C3orf67Q6ZVT6 689 aa13.32□□□□□ -0.28
UBR3-211ENST00000487689 ZNF467Q7Z7K2 595 aaPredicted RBP13.32□□□□□ -0.28
UBR3-211ENST00000487689 MKRN3Q13064 507 aaKnown RBP13.31□□□□□ -0.28
UBR3-211ENST00000487689 GSE1Q14687 1217 aa13.3□□□□□ -0.28
UBR3-211ENST00000487689 KLHL34Q8N239 644 aa13.3□□□□□ -0.28
UBR3-211ENST00000487689 L3MBTL3Q96JM7 780 aaPredicted RBP13.29□□□□□ -0.28
UBR3-211ENST00000487689 EMP3P54852 163 aa13.27□□□□□ -0.29
UBR3-211ENST00000487689 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.26□□□□□ -0.292e-10■■■□□ 18.9
UBR3-211ENST00000487689 PSEN1P49768 467 aa13.24□□□□□ -0.29
UBR3-211ENST00000487689 CHRM1P11229 460 aaPredicted RBP13.22□□□□□ -0.29
UBR3-211ENST00000487689 VASPP50552 380 aaPredicted RBP13.22□□□□□ -0.29
UBR3-211ENST00000487689 POTEB3A0JP26 581 aa13.18□□□□□ -0.3
UBR3-211ENST00000487689 POTEBQ6S5H4 581 aa13.18□□□□□ -0.3
UBR3-211ENST00000487689 HS3ST6Q96QI5 342 aa13.17□□□□□ -0.3
UBR3-211ENST00000487689 FAM205CA6NFA0 338 aa13.16□□□□□ -0.3
UBR3-211ENST00000487689 DPY19L2Q6NUT2 758 aa13.15□□□□□ -0.3
UBR3-211ENST00000487689 KRTAP3-3Q9BYR6 98 aa13.15□□□□□ -0.3
UBR3-211ENST00000487689 KRTAP3-2Q9BYR7 98 aa13.15□□□□□ -0.3
UBR3-211ENST00000487689 ILDR1Q86SU0 546 aaPredicted RBP13.13□□□□□ -0.31
UBR3-211ENST00000487689 PDAP1Q13442 181 aaKnown RBP13.12□□□□□ -0.31
UBR3-211ENST00000487689 CABP2Q9NPB3 220 aa13.08□□□□□ -0.32
UBR3-211ENST00000487689 G3V3G9 751 aa13.06□□□□□ -0.32
UBR3-211ENST00000487689 BOLA1Q9Y3E2 137 aa13.06□□□□□ -0.32
UBR3-211ENST00000487689 HOXB3P14651 431 aaPredicted RBP13.04□□□□□ -0.32
UBR3-211ENST00000487689 CIZ1Q9ULV3 898 aaPredicted RBP13.03□□□□□ -0.32
UBR3-211ENST00000487689 SPOCK2Q92563 424 aa13□□□□□ -0.33
UBR3-211ENST00000487689 ZNF710Q8N1W2 664 aa12.98□□□□□ -0.33
UBR3-211ENST00000487689 HOXB1P14653 301 aaPredicted RBP12.96□□□□□ -0.33
UBR3-211ENST00000487689 IFNLR1Q8IU57 520 aaPredicted RBP12.95□□□□□ -0.34
UBR3-211ENST00000487689 DOK7Q18PE1 504 aa12.93□□□□□ -0.34
UBR3-211ENST00000487689 ERBB3P21860 1342 aa12.92□□□□□ -0.34
UBR3-211ENST00000487689 EFCAB3Q8N7B9 438 aa12.88□□□□□ -0.35
UBR3-211ENST00000487689 RIMBP2O15034 1052 aa12.85□□□□□ -0.35
UBR3-211ENST00000487689 VARS2Q5ST30 1063 aaKnown RBP12.84□□□□□ -0.35
UBR3-211ENST00000487689 RNF166Q96A37 237 aaPredicted RBP12.83□□□□□ -0.36
UBR3-211ENST00000487689 TMEM92Q6UXU6 159 aa12.8□□□□□ -0.36
UBR3-211ENST00000487689 MICALL2Q8IY33 904 aa12.8□□□□□ -0.36
UBR3-211ENST00000487689 TRIM41Q8WV44 630 aa12.77□□□□□ -0.37
UBR3-211ENST00000487689 MYT1LQ9UL68 1186 aa12.76□□□□□ -0.37
UBR3-211ENST00000487689 ZSWIM6Q9HCJ5 1215 aa12.75□□□□□ -0.37
UBR3-211ENST00000487689 ZNF687Q8N1G0 1237 aa12.74□□□□□ -0.37
UBR3-211ENST00000487689 GPR153Q6NV75 609 aa12.72□□□□□ -0.37
UBR3-211ENST00000487689 SOX12O15370 315 aa12.7□□□□□ -0.38
UBR3-211ENST00000487689 MS4A4AQ96JQ5 239 aa12.7□□□□□ -0.38
UBR3-211ENST00000487689 PHF8Q9UPP1 1060 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms