RNA–Protein interactions for RNA: ENST00000487211.5

RTFDC1-209, Transcript of Protein RTF2 homolog, humanhuman

TSL 3

Gene RTFDC1, Length 411 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-209ENST00000487211 CHADLQ6NUI6 762 aa12.96□□□□□ -0.33
RTFDC1-209ENST00000487211 RASEFQ8IZ41 740 aa12.96□□□□□ -0.33
RTFDC1-209ENST00000487211 HAP1P54257 671 aaPredicted RBP12.95□□□□□ -0.34
RTFDC1-209ENST00000487211 CHGAP10645 457 aaKnown RBP12.93□□□□□ -0.34
RTFDC1-209ENST00000487211 RNF25Q96BH1 459 aaPredicted RBP12.9□□□□□ -0.34
RTFDC1-209ENST00000487211 PAXIP1Q6ZW49 1069 aaPredicted RBP12.88□□□□□ -0.35
RTFDC1-209ENST00000487211 PRKAR2AP13861 404 aaKnown RBP12.86□□□□□ -0.35
RTFDC1-209ENST00000487211 CFAP44Q96MT7 982 aa12.86□□□□□ -0.35
RTFDC1-209ENST00000487211 FARP1Q9Y4F1 1045 aaPredicted RBP12.86□□□□□ -0.35
RTFDC1-209ENST00000487211 RIOK3O14730 519 aaKnown RBP12.85□□□□□ -0.35
RTFDC1-209ENST00000487211 PYGBP11216 843 aa12.83□□□□□ -0.36
RTFDC1-209ENST00000487211 CHRM1P11229 460 aaPredicted RBP12.83□□□□□ -0.36
RTFDC1-209ENST00000487211 TAOK2Q9UL54 1235 aa12.83□□□□□ -0.36
RTFDC1-209ENST00000487211 HS6ST3Q8IZP7 471 aa12.82□□□□□ -0.36
RTFDC1-209ENST00000487211 FXR2P51116 673 aaKnown RBP eCLIP12.81□□□□□ -0.36
RTFDC1-209ENST00000487211 TSPYL2Q9H2G4 693 aaPredicted RBP12.81□□□□□ -0.36
RTFDC1-209ENST00000487211 SPRYD3Q8NCJ5 442 aa12.8□□□□□ -0.36
RTFDC1-209ENST00000487211 CHRDL2Q6WN34 429 aa12.79□□□□□ -0.36
RTFDC1-209ENST00000487211 VGFO15240 615 aaPredicted RBP12.77□□□□□ -0.37
RTFDC1-209ENST00000487211 CCDC180Q9P1Z9 1646 aa12.77□□□□□ -0.37
RTFDC1-209ENST00000487211 PIP4P2Q8N4L2 257 aa12.74□□□□□ -0.37
RTFDC1-209ENST00000487211 STK25O00506 426 aa12.73□□□□□ -0.37
RTFDC1-209ENST00000487211 VSIG10Q8N0Z9 540 aa12.71□□□□□ -0.37
RTFDC1-209ENST00000487211 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.68□□□□□ -0.38
RTFDC1-209ENST00000487211 ZFP91Q96JP5 570 aaPredicted RBP12.68□□□□□ -0.38
RTFDC1-209ENST00000487211 SGIP1Q9BQI5 828 aa12.67□□□□□ -0.38
RTFDC1-209ENST00000487211 STK24Q9Y6E0 443 aa12.66□□□□□ -0.38
RTFDC1-209ENST00000487211 PAK3O75914 559 aaPredicted RBP12.65□□□□□ -0.38
RTFDC1-209ENST00000487211 BCL11BQ9C0K0 894 aaPredicted RBP12.65□□□□□ -0.38
RTFDC1-209ENST00000487211 NKX1-1Q15270 411 aaPredicted RBP12.64□□□□□ -0.39
RTFDC1-209ENST00000487211 ZNF467Q7Z7K2 595 aaPredicted RBP12.64□□□□□ -0.39
RTFDC1-209ENST00000487211 TSHZ2Q9NRE2 1034 aa12.64□□□□□ -0.39
RTFDC1-209ENST00000487211 CCDC61Q9Y6R9 512 aa12.64□□□□□ -0.39
RTFDC1-209ENST00000487211 KDM2AQ9Y2K7 1162 aa12.61□□□□□ -0.39
RTFDC1-209ENST00000487211 PCDHB8Q9UN66 801 aa12.59□□□□□ -0.39
RTFDC1-209ENST00000487211 PCDHB13Q9Y5F0 798 aa12.59□□□□□ -0.39
RTFDC1-209ENST00000487211 GTPBP6O43824 516 aaPredicted RBP12.56□□□□□ -0.4
RTFDC1-209ENST00000487211 PDAP1Q13442 181 aaKnown RBP12.55□□□□□ -0.4
RTFDC1-209ENST00000487211 ZNF579Q8NAF0 562 aaKnown RBP12.54□□□□□ -0.4
RTFDC1-209ENST00000487211 ZRANB1Q9UGI0 708 aa12.52□□□□□ -0.41
RTFDC1-209ENST00000487211 CD44P16070 742 aaKnown RBP12.51□□□□□ -0.41
RTFDC1-209ENST00000487211 MAP3K13O43283 966 aa12.5□□□□□ -0.41
RTFDC1-209ENST00000487211 PSEN1P49768 467 aa12.5□□□□□ -0.41
RTFDC1-209ENST00000487211 KIF12Q96FN5 646 aa12.5□□□□□ -0.41
RTFDC1-209ENST00000487211 IFNL1Q8IU54 200 aa12.49□□□□□ -0.41
RTFDC1-209ENST00000487211 RYDENQ9NUL5 291 aaKnown RBP12.48□□□□□ -0.41
RTFDC1-209ENST00000487211 BCANQ96GW7 911 aa12.46□□□□□ -0.41
RTFDC1-209ENST00000487211 PHF12Q96QT6 1004 aa12.44□□□□□ -0.42
RTFDC1-209ENST00000487211 C19orf67A6NJJ6 358 aa12.37□□□□□ -0.43
RTFDC1-209ENST00000487211 CABP2Q9NPB3 220 aa12.36□□□□□ -0.43
RTFDC1-209ENST00000487211 EFCAB3Q8N7B9 438 aa12.33□□□□□ -0.44
RTFDC1-209ENST00000487211 MFRPQ9BY79 579 aa12.33□□□□□ -0.44
RTFDC1-209ENST00000487211 MS4A3Q96HJ5 214 aa12.29□□□□□ -0.44
RTFDC1-209ENST00000487211 SOX12O15370 315 aa12.27□□□□□ -0.45
RTFDC1-209ENST00000487211 NLRP6P59044 892 aa12.27□□□□□ -0.45
RTFDC1-209ENST00000487211 TMEM106CQ9BVX2 250 aa12.27□□□□□ -0.45
RTFDC1-209ENST00000487211 PHF8Q9UPP1 1060 aa12.26□□□□□ -0.45
RTFDC1-209ENST00000487211 TRPC6Q9Y210 931 aa12.25□□□□□ -0.45
RTFDC1-209ENST00000487211 GOLGA2Q08379 1002 aa12.24□□□□□ -0.45
RTFDC1-209ENST00000487211 FBXO22Q8NEZ5 403 aa12.24□□□□□ -0.45
RTFDC1-209ENST00000487211 HAX1O00165 279 aa12.22□□□□□ -0.45
RTFDC1-209ENST00000487211 PPP1R37O75864 691 aa12.21□□□□□ -0.45
RTFDC1-209ENST00000487211 CADPS2Q86UW7 1296 aa12.21□□□□□ -0.45
RTFDC1-209ENST00000487211 NBR1Q14596 966 aa12.2□□□□□ -0.46
RTFDC1-209ENST00000487211 MKRN3Q13064 507 aaKnown RBP12.17□□□□□ -0.46
RTFDC1-209ENST00000487211 TIE1P35590 1138 aa12.16□□□□□ -0.46
RTFDC1-209ENST00000487211 WDR70Q9NW82 654 aa12.16□□□□□ -0.46
RTFDC1-209ENST00000487211 CECR2Q9BXF3 1484 aa12.14□□□□□ -0.47
RTFDC1-209ENST00000487211 TTLL13PA6NNM8 815 aa12.14□□□□□ -0.47
RTFDC1-209ENST00000487211 GALR2O43603 387 aaPredicted RBP12.14□□□□□ -0.47
RTFDC1-209ENST00000487211 EVX2Q03828 476 aa12.13□□□□□ -0.47
RTFDC1-209ENST00000487211 MS4A4AQ96JQ5 239 aa12.13□□□□□ -0.47
RTFDC1-209ENST00000487211 BMP2KQ9NSY1 1161 aaPredicted RBP12.13□□□□□ -0.47
RTFDC1-209ENST00000487211 PRKCSHP14314 528 aaPredicted RBP12.11□□□□□ -0.47
RTFDC1-209ENST00000487211 ZCCHC6Q5VYS8 1495 aaKnown RBP12.1□□□□□ -0.47
RTFDC1-209ENST00000487211 CLCN6P51797 869 aa12.09□□□□□ -0.47
RTFDC1-209ENST00000487211 P3H3Q8IVL6 736 aa12.08□□□□□ -0.48
RTFDC1-209ENST00000487211 TPRNQ4KMQ1 711 aa12.07□□□□□ -0.48
RTFDC1-209ENST00000487211 TRIM35Q9UPQ4 493 aa12.07□□□□□ -0.48
RTFDC1-209ENST00000487211 NACADO15069 1562 aa12.05□□□□□ -0.48
RTFDC1-209ENST00000487211 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.05□□□□□ -0.484e-7■□□□□ 9.9
RTFDC1-209ENST00000487211 RB1CC1Q8TDY2 1594 aa12.04□□□□□ -0.48
RTFDC1-209ENST00000487211 CC2D2AQ9P2K1 1620 aa12.04□□□□□ -0.48
RTFDC1-209ENST00000487211 CUX2O14529 1486 aa12.02□□□□□ -0.48
RTFDC1-209ENST00000487211 KCNV2Q8TDN2 545 aa12.02□□□□□ -0.49
RTFDC1-209ENST00000487211 MYO15BQ96JP2 1530 aa12.01□□□□□ -0.49
RTFDC1-209ENST00000487211 DCAF1Q9Y4B6 1507 aa12□□□□□ -0.49
RTFDC1-209ENST00000487211 ATN1P54259 1190 aaPredicted RBP11.99□□□□□ -0.49
RTFDC1-209ENST00000487211 ILDR1Q86SU0 546 aaPredicted RBP11.99□□□□□ -0.49
RTFDC1-209ENST00000487211 UNC13AQ9UPW8 1703 aa11.99□□□□□ -0.49
RTFDC1-209ENST00000487211 NCKAP5LQ9HCH0 1330 aa11.98□□□□□ -0.49
RTFDC1-209ENST00000487211 PDE4AP27815 886 aa11.98□□□□□ -0.49
RTFDC1-209ENST00000487211 LARP6Q9BRS8 491 aaKnown RBP11.98□□□□□ -0.49
RTFDC1-209ENST00000487211 ATMINO43313 823 aaPredicted RBP11.96□□□□□ -0.49
RTFDC1-209ENST00000487211 E2F4Q16254 413 aa11.96□□□□□ -0.49
RTFDC1-209ENST00000487211 BICRAQ9NZM4 1560 aa11.95□□□□□ -0.5
RTFDC1-209ENST00000487211 ASTLQ6HA08 431 aaPredicted RBP11.94□□□□□ -0.5
RTFDC1-209ENST00000487211 DPY19L2Q6NUT2 758 aa11.94□□□□□ -0.5
RTFDC1-209ENST00000487211 CRISPLD2Q9H0B8 497 aa11.94□□□□□ -0.5
RTFDC1-209ENST00000487211 GABBR2O75899 941 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms