RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 FKBP8Q14318 412 aa14.46□□□□□ -0.09
TMEM39A-209ENST00000486235 PELP1Q8IZL8 1130 aaKnown RBP14.43□□□□□ -0.1
TMEM39A-209ENST00000486235 PLCD3Q8N3E9 789 aa14.42□□□□□ -0.1
TMEM39A-209ENST00000486235 CCDC61Q9Y6R9 512 aa14.41□□□□□ -0.1
TMEM39A-209ENST00000486235 RASEFQ8IZ41 740 aa14.38□□□□□ -0.11
TMEM39A-209ENST00000486235 POTEB2H3BUK9 544 aa14.35□□□□□ -0.11
TMEM39A-209ENST00000486235 KIF12Q96FN5 646 aa14.34□□□□□ -0.11
TMEM39A-209ENST00000486235 ATMINO43313 823 aaPredicted RBP14.33□□□□□ -0.12
TMEM39A-209ENST00000486235 ASTLQ6HA08 431 aaPredicted RBP14.31□□□□□ -0.12
TMEM39A-209ENST00000486235 MAP3K13O43283 966 aa14.28□□□□□ -0.12
TMEM39A-209ENST00000486235 OTUD5Q96G74 571 aa14.27□□□□□ -0.13
TMEM39A-209ENST00000486235 METRNQ9UJH8 293 aa14.27□□□□□ -0.13
TMEM39A-209ENST00000486235 TRPC6Q9Y210 931 aa14.27□□□□□ -0.13
TMEM39A-209ENST00000486235 ATN1P54259 1190 aaPredicted RBP14.24□□□□□ -0.13
TMEM39A-209ENST00000486235 SLC39A7Q92504 469 aa14.23□□□□□ -0.13
TMEM39A-209ENST00000486235 C7P10643 843 aa14.21□□□□□ -0.13
TMEM39A-209ENST00000486235 NUBP1P53384 320 aa14.21□□□□□ -0.13
TMEM39A-209ENST00000486235 ZBTB47Q9UFB7 747 aaPredicted RBP14.21□□□□□ -0.13
TMEM39A-209ENST00000486235 BMP2KQ9NSY1 1161 aaPredicted RBP14.2□□□□□ -0.14
TMEM39A-209ENST00000486235 POTEJP0CG39 1038 aa14.14□□□□□ -0.15
TMEM39A-209ENST00000486235 PCDHB13Q9Y5F0 798 aa14.12□□□□□ -0.15
TMEM39A-209ENST00000486235 TIE1P35590 1138 aa14.1□□□□□ -0.15
TMEM39A-209ENST00000486235 FAM212AQ96EL1 285 aa14.1□□□□□ -0.15
TMEM39A-209ENST00000486235 TTLL13PA6NNM8 815 aa14.08□□□□□ -0.16
TMEM39A-209ENST00000486235 FBXO3Q9UK99 471 aa14.08□□□□□ -0.16
TMEM39A-209ENST00000486235 RB1CC1Q8TDY2 1594 aa14.06□□□□□ -0.16
TMEM39A-209ENST00000486235 POTEFA5A3E0 1075 aa14.06□□□□□ -0.16
TMEM39A-209ENST00000486235 DCAF8Q5TAQ9 597 aa14.05□□□□□ -0.16
TMEM39A-209ENST00000486235 IFNL1Q8IU54 200 aa14.05□□□□□ -0.16
TMEM39A-209ENST00000486235 SGIP1Q9BQI5 828 aa14.03□□□□□ -0.16
TMEM39A-209ENST00000486235 TRIM35Q9UPQ4 493 aa14.01□□□□□ -0.17
TMEM39A-209ENST00000486235 SEC24BO95487 1268 aa14□□□□□ -0.17
TMEM39A-209ENST00000486235 COLQQ9Y215 455 aaPredicted RBP14□□□□□ -0.17
TMEM39A-209ENST00000486235 PYGBP11216 843 aa13.99□□□□□ -0.17
TMEM39A-209ENST00000486235 MAMSTRQ6ZN01 415 aa13.99□□□□□ -0.17
TMEM39A-209ENST00000486235 KLHL34Q8N239 644 aa13.99□□□□□ -0.17
TMEM39A-209ENST00000486235 VASPP50552 380 aaPredicted RBP13.96□□□□□ -0.17
TMEM39A-209ENST00000486235 TMEM106CQ9BVX2 250 aa13.96□□□□□ -0.17
TMEM39A-209ENST00000486235 SCUBE2Q9NQ36 999 aa13.95□□□□□ -0.18
TMEM39A-209ENST00000486235 DCAF8L2P0C7V8 631 aa13.91□□□□□ -0.18
TMEM39A-209ENST00000486235 NACADO15069 1562 aa13.91□□□□□ -0.18
TMEM39A-209ENST00000486235 POTEMA6NI47 508 aa13.9□□□□□ -0.18
TMEM39A-209ENST00000486235 PLSCR2Q9NRY7 297 aa13.9□□□□□ -0.18
TMEM39A-209ENST00000486235 PCDHB8Q9UN66 801 aa13.9□□□□□ -0.18
TMEM39A-209ENST00000486235 IER5LQ5T953 404 aa13.87□□□□□ -0.19
TMEM39A-209ENST00000486235 POTEGQ6S5H5 508 aa13.87□□□□□ -0.19
TMEM39A-209ENST00000486235 FAM163AQ96GL9 167 aaPredicted RBP13.87□□□□□ -0.19
TMEM39A-209ENST00000486235 PLCG2P16885 1265 aa13.8□□□□□ -0.2
TMEM39A-209ENST00000486235 GSE1Q14687 1217 aa13.79□□□□□ -0.2
TMEM39A-209ENST00000486235 LCE2DQ5TA82 110 aaPredicted RBP13.77□□□□□ -0.21
TMEM39A-209ENST00000486235 IRX5P78411 483 aaPredicted RBP13.75□□□□□ -0.21
TMEM39A-209ENST00000486235 IFNLR1Q8IU57 520 aaPredicted RBP13.73□□□□□ -0.21
TMEM39A-209ENST00000486235 UNC13AQ9UPW8 1703 aa13.71□□□□□ -0.21
TMEM39A-209ENST00000486235 SLAIN1Q8ND83 568 aa13.71□□□□□ -0.21
TMEM39A-209ENST00000486235 OCEL1Q9H607 264 aa13.7□□□□□ -0.22
TMEM39A-209ENST00000486235 ZNF467Q7Z7K2 595 aaPredicted RBP13.69□□□□□ -0.22
TMEM39A-209ENST00000486235 CIZ1Q9ULV3 898 aaPredicted RBP13.69□□□□□ -0.22
TMEM39A-209ENST00000486235 SPOCK2Q92563 424 aa13.68□□□□□ -0.22
TMEM39A-209ENST00000486235 BICRAQ9NZM4 1560 aa13.66□□□□□ -0.22
TMEM39A-209ENST00000486235 CHRM1P11229 460 aaPredicted RBP13.66□□□□□ -0.22
TMEM39A-209ENST00000486235 PSEN1P49768 467 aa13.63□□□□□ -0.23
TMEM39A-209ENST00000486235 GOLGA2Q08379 1002 aa13.63□□□□□ -0.23
TMEM39A-209ENST00000486235 MYO15BQ96JP2 1530 aa13.61□□□□□ -0.23
TMEM39A-209ENST00000486235 MKRN3Q13064 507 aaKnown RBP13.6□□□□□ -0.23
TMEM39A-209ENST00000486235 PCDH10Q9P2E7 1040 aa13.56□□□□□ -0.24
TMEM39A-209ENST00000486235 PDCD7Q8N8D1 485 aaKnown RBP13.55□□□□□ -0.24
TMEM39A-209ENST00000486235 ST18O60284 1047 aa13.54□□□□□ -0.24
TMEM39A-209ENST00000486235 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.54□□□□□ -0.242e-6■■□□□ 11.9
TMEM39A-209ENST00000486235 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.54□□□□□ -0.24
TMEM39A-209ENST00000486235 PDAP1Q13442 181 aaKnown RBP13.53□□□□□ -0.24
TMEM39A-209ENST00000486235 CABP2Q9NPB3 220 aa13.49□□□□□ -0.25
TMEM39A-209ENST00000486235 C3orf67Q6ZVT6 689 aa13.46□□□□□ -0.25
TMEM39A-209ENST00000486235 L3MBTL3Q96JM7 780 aaPredicted RBP13.46□□□□□ -0.25
TMEM39A-209ENST00000486235 CECR2Q9BXF3 1484 aa13.46□□□□□ -0.25
TMEM39A-209ENST00000486235 DPY19L2Q6NUT2 758 aa13.45□□□□□ -0.26
TMEM39A-209ENST00000486235 CDAN1Q8IWY9 1227 aa13.45□□□□□ -0.26
TMEM39A-209ENST00000486235 ZCCHC6Q5VYS8 1495 aaKnown RBP13.43□□□□□ -0.26
TMEM39A-209ENST00000486235 CC2D2AQ9P2K1 1620 aa13.43□□□□□ -0.26
TMEM39A-209ENST00000486235 SHROOM4Q9ULL8 1493 aa13.41□□□□□ -0.26
TMEM39A-209ENST00000486235 SCRIBQ14160 1630 aa13.39□□□□□ -0.27
TMEM39A-209ENST00000486235 SNPHO15079 494 aa13.39□□□□□ -0.27
TMEM39A-209ENST00000486235 MARVELD3Q96A59 401 aa13.38□□□□□ -0.27
TMEM39A-209ENST00000486235 DCAF1Q9Y4B6 1507 aa13.37□□□□□ -0.27
TMEM39A-209ENST00000486235 ILDR1Q86SU0 546 aaPredicted RBP13.36□□□□□ -0.27
TMEM39A-209ENST00000486235 EIF4G1Q04637 1599 aaKnown RBP13.35□□□□□ -0.27
TMEM39A-209ENST00000486235 TRIM41Q8WV44 630 aa13.33□□□□□ -0.28
TMEM39A-209ENST00000486235 G3V3G9 751 aa13.32□□□□□ -0.28
TMEM39A-209ENST00000486235 EFCAB3Q8N7B9 438 aa13.32□□□□□ -0.28
TMEM39A-209ENST00000486235 TMEM121BQ9BXQ6 578 aaPredicted RBP13.31□□□□□ -0.28
TMEM39A-209ENST00000486235 BOLA1Q9Y3E2 137 aa13.31□□□□□ -0.28
TMEM39A-209ENST00000486235 RNF25Q96BH1 459 aaPredicted RBP13.26□□□□□ -0.29
TMEM39A-209ENST00000486235 RIOK3O14730 519 aaKnown RBP13.25□□□□□ -0.29
TMEM39A-209ENST00000486235 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.22□□□□□ -0.29
TMEM39A-209ENST00000486235 EMP3P54852 163 aa13.22□□□□□ -0.29
TMEM39A-209ENST00000486235 ZFP91Q96JP5 570 aaPredicted RBP13.22□□□□□ -0.29
TMEM39A-209ENST00000486235 FAM205CA6NFA0 338 aa13.16□□□□□ -0.3
TMEM39A-209ENST00000486235 VGFO15240 615 aaPredicted RBP13.16□□□□□ -0.3
TMEM39A-209ENST00000486235 DNAJC5Q9H3Z4 198 aa13.15□□□□□ -0.3
TMEM39A-209ENST00000486235 POTEB3A0JP26 581 aa13.14□□□□□ -0.31
TMEM39A-209ENST00000486235 HOXB3P14651 431 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms