RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 PLEKHD1A6NEE1 506 aa14.01□□□□□ -0.17
SRGAP3-207ENST00000485983 NPHP1O15259 732 aa13.99□□□□□ -0.17
SRGAP3-207ENST00000485983 MRS2Q9HD23 443 aa13.98□□□□□ -0.17
SRGAP3-207ENST00000485983 CFAP53Q96M91 514 aa13.97□□□□□ -0.17
SRGAP3-207ENST00000485983 LMOD2Q6P5Q4 547 aa13.97□□□□□ -0.17
SRGAP3-207ENST00000485983 ZCCHC6Q5VYS8 1495 aaKnown RBP13.96□□□□□ -0.17
SRGAP3-207ENST00000485983 EIF5BO60841 1220 aaKnown RBP13.95□□□□□ -0.18
SRGAP3-207ENST00000485983 NCLP19338 710 aaKnown RBP13.95□□□□□ -0.18
SRGAP3-207ENST00000485983 CDCA8Q53HL2 280 aa13.93□□□□□ -0.18
SRGAP3-207ENST00000485983 PPM1GO15355 546 aaPredicted RBP13.91□□□□□ -0.18
SRGAP3-207ENST00000485983 ACIN1Q9UKV3 1341 aaKnown RBP13.91□□□□□ -0.18
SRGAP3-207ENST00000485983 ZRSR1Q15695 479 aaKnown RBP13.9□□□□□ -0.18
SRGAP3-207ENST00000485983 RGL3Q3MIN7 710 aa13.9□□□□□ -0.18
SRGAP3-207ENST00000485983 EIF4G2P78344 907 aaKnown RBP eCLIP13.9□□□□□ -0.18
SRGAP3-207ENST00000485983 TULP1O00294 542 aaPredicted RBP13.89□□□□□ -0.19
SRGAP3-207ENST00000485983 RRP7BPQ9NSQ0 103 aa13.88□□□□□ -0.19
SRGAP3-207ENST00000485983 POGKQ9P215 609 aa13.87□□□□□ -0.19
SRGAP3-207ENST00000485983 CCDC180Q9P1Z9 1646 aa13.86□□□□□ -0.19
SRGAP3-207ENST00000485983 CASC1Q6TDU7 716 aa13.86□□□□□ -0.19
SRGAP3-207ENST00000485983 KNSTRNQ9Y448 316 aa13.85□□□□□ -0.19
SRGAP3-207ENST00000485983 RSF1Q96T23 1441 aaPredicted RBP13.85□□□□□ -0.19
SRGAP3-207ENST00000485983 GOLGA6L22H0YM25 854 aa13.84□□□□□ -0.19
SRGAP3-207ENST00000485983 BECN1Q14457 450 aa13.84□□□□□ -0.19
SRGAP3-207ENST00000485983 NUDCQ9Y266 331 aa13.84□□□□□ -0.19
SRGAP3-207ENST00000485983 MAPK8IP3Q9UPT6 1336 aa13.83□□□□□ -0.2
SRGAP3-207ENST00000485983 CFDP1Q9UEE9 299 aaPredicted RBP13.83□□□□□ -0.2
SRGAP3-207ENST00000485983 GLIPR1L2Q4G1C9 344 aa13.82□□□□□ -0.2
SRGAP3-207ENST00000485983 AEBP2Q6ZN18 517 aaPredicted RBP13.82□□□□□ -0.2
SRGAP3-207ENST00000485983 HDGFP51858 240 aaKnown RBP13.81□□□□□ -0.2
SRGAP3-207ENST00000485983 GOLGA2Q08379 1002 aa13.81□□□□□ -0.2
SRGAP3-207ENST00000485983 FTSJ3Q8IY81 847 aaKnown RBP13.8□□□□□ -0.2
SRGAP3-207ENST00000485983 LAS1LQ9Y4W2 734 aaKnown RBP13.79□□□□□ -0.2
SRGAP3-207ENST00000485983 ANP32EQ9BTT0 268 aa13.79□□□□□ -0.2
SRGAP3-207ENST00000485983 OS9Q13438 667 aaPredicted RBP13.76□□□□□ -0.21
SRGAP3-207ENST00000485983 NBR1Q14596 966 aa13.76□□□□□ -0.21
SRGAP3-207ENST00000485983 DDRGK1Q96HY6 314 aa13.76□□□□□ -0.21
SRGAP3-207ENST00000485983 CHMP4BQ9H444 224 aaKnown RBP13.75□□□□□ -0.21
SRGAP3-207ENST00000485983 HIRIP3Q9BW71 556 aaPredicted RBP13.75□□□□□ -0.21
SRGAP3-207ENST00000485983 FGD1P98174 961 aa13.74□□□□□ -0.21
SRGAP3-207ENST00000485983 TRIM44Q96DX7 344 aaPredicted RBP13.74□□□□□ -0.21
SRGAP3-207ENST00000485983 NEUROD2Q15784 382 aa13.74□□□□□ -0.21
SRGAP3-207ENST00000485983 CARD11Q9BXL7 1154 aa13.74□□□□□ -0.21
SRGAP3-207ENST00000485983 PNNQ9H307 717 aaKnown RBP13.73□□□□□ -0.21
SRGAP3-207ENST00000485983 CLIP1P30622 1438 aa13.72□□□□□ -0.21
SRGAP3-207ENST00000485983 ERCC6Q03468 1493 aa13.72□□□□□ -0.21
SRGAP3-207ENST00000485983 MLECQ14165 292 aa13.71□□□□□ -0.21
SRGAP3-207ENST00000485983 PTMAP06454 111 aaKnown RBP13.71□□□□□ -0.21
SRGAP3-207ENST00000485983 TAOK2Q9UL54 1235 aa13.71□□□□□ -0.22
SRGAP3-207ENST00000485983 IRX6P78412 446 aaPredicted RBP13.7□□□□□ -0.22
SRGAP3-207ENST00000485983 KCNJ4P48050 445 aa13.7□□□□□ -0.22
SRGAP3-207ENST00000485983 RB1CC1Q8TDY2 1594 aa13.69□□□□□ -0.22
SRGAP3-207ENST00000485983 U2SURPO15042 1029 aaKnown RBP13.68□□□□□ -0.22
SRGAP3-207ENST00000485983 MS4A1P11836 297 aa13.68□□□□□ -0.22
SRGAP3-207ENST00000485983 TPRNQ4KMQ1 711 aa13.68□□□□□ -0.22
SRGAP3-207ENST00000485983 NAP1L2Q9ULW6 460 aaPredicted RBP13.67□□□□□ -0.22
SRGAP3-207ENST00000485983 KANK1Q14678 1352 aa13.66□□□□□ -0.22
SRGAP3-207ENST00000485983 TNNT2P45379 298 aaPredicted RBP13.66□□□□□ -0.22
SRGAP3-207ENST00000485983 ISY1Q9ULR0 285 aaKnown RBP13.66□□□□□ -0.22
SRGAP3-207ENST00000485983 CLSTN1O94985 981 aa13.64□□□□□ -0.23
SRGAP3-207ENST00000485983 TMX4Q9H1E5 349 aaPredicted RBP13.64□□□□□ -0.23
SRGAP3-207ENST00000485983 SOX12O15370 315 aa13.64□□□□□ -0.23
SRGAP3-207ENST00000485983 DCAF1Q9Y4B6 1507 aa13.63□□□□□ -0.23
SRGAP3-207ENST00000485983 GOLGA6L6A8MZA4 724 aa13.63□□□□□ -0.23
SRGAP3-207ENST00000485983 FRAT1Q92837 279 aaPredicted RBP13.63□□□□□ -0.23
SRGAP3-207ENST00000485983 NCBP3Q53F19 620 aaKnown RBP13.62□□□□□ -0.23
SRGAP3-207ENST00000485983 SRPK2P78362 688 aaKnown RBP13.62□□□□□ -0.23
SRGAP3-207ENST00000485983 DNTTIP2Q5QJE6 756 aaKnown RBP13.62□□□□□ -0.23
SRGAP3-207ENST00000485983 NRDCO43847 1150 aa13.61□□□□□ -0.23
SRGAP3-207ENST00000485983 RTF1Q92541 710 aaKnown RBP13.6□□□□□ -0.23
SRGAP3-207ENST00000485983 CSB-PGBD3P0DP91 1061 aa13.59□□□□□ -0.23
SRGAP3-207ENST00000485983 TMF1P82094 1093 aa13.58□□□□□ -0.24
SRGAP3-207ENST00000485983 PLCB2Q00722 1185 aa13.58□□□□□ -0.24
SRGAP3-207ENST00000485983 GOLGA6L4A6NEF3 574 aa13.58□□□□□ -0.24
SRGAP3-207ENST00000485983 SENP3-EIF4A1A0A087X0R7 540 aa13.57□□□□□ -0.24
SRGAP3-207ENST00000485983 KIF27Q86VH2 1401 aa13.57□□□□□ -0.24
SRGAP3-207ENST00000485983 CCDC9Q9Y3X0 531 aaKnown RBP13.57□□□□□ -0.24
SRGAP3-207ENST00000485983 CCNB3Q8WWL7 1395 aa13.56□□□□□ -0.24
SRGAP3-207ENST00000485983 EEA1Q15075 1411 aa13.56□□□□□ -0.24
SRGAP3-207ENST00000485983 CC2D1BQ5T0F9 858 aaKnown RBP13.56□□□□□ -0.24
SRGAP3-207ENST00000485983 GGT6Q6P531 493 aa13.55□□□□□ -0.24
SRGAP3-207ENST00000485983 PAK3O75914 559 aaPredicted RBP13.55□□□□□ -0.24
SRGAP3-207ENST00000485983 HSP90AB1P08238 724 aaKnown RBP13.54□□□□□ -0.24
SRGAP3-207ENST00000485983 GOLGA3Q08378 1498 aa13.54□□□□□ -0.24
SRGAP3-207ENST00000485983 MIER1Q8N108 512 aa13.53□□□□□ -0.24
SRGAP3-207ENST00000485983 RGS3P49796 1198 aa13.53□□□□□ -0.24
SRGAP3-207ENST00000485983 SAFB2Q14151 953 aaKnown RBP eCLIP13.53□□□□□ -0.24
SRGAP3-207ENST00000485983 HDGFL2Q7Z4V5 671 aaPredicted RBP13.53□□□□□ -0.24
SRGAP3-207ENST00000485983 MCCP23508 829 aa13.53□□□□□ -0.24
SRGAP3-207ENST00000485983 MORC1Q86VD1 984 aa13.53□□□□□ -0.24
SRGAP3-207ENST00000485983 ZNF330Q9Y3S2 320 aaPredicted RBP13.53□□□□□ -0.24
SRGAP3-207ENST00000485983 DCAF11Q8TEB1 546 aa13.52□□□□□ -0.25
SRGAP3-207ENST00000485983 MYO15BQ96JP2 1530 aa13.51□□□□□ -0.25
SRGAP3-207ENST00000485983 CHMP4AQ9BY43 222 aa13.51□□□□□ -0.25
SRGAP3-207ENST00000485983 BAZ1BQ9UIG0 1483 aaKnown RBP13.51□□□□□ -0.25
SRGAP3-207ENST00000485983 GNL2Q13823 731 aaKnown RBP13.5□□□□□ -0.25
SRGAP3-207ENST00000485983 STK26Q9P289 416 aa13.5□□□□□ -0.25
SRGAP3-207ENST00000485983 NACADO15069 1562 aa13.5□□□□□ -0.25
SRGAP3-207ENST00000485983 CFAP44Q96MT7 982 aa13.5□□□□□ -0.25
SRGAP3-207ENST00000485983 L1TD1Q5T7N2 865 aaKnown RBP13.49□□□□□ -0.25
SRGAP3-207ENST00000485983 WRNQ14191 1432 aaPredicted RBP eCLIP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms