RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 CFAP44Q96MT7 982 aa17.87■□□□□ 0.45
MCF2-207ENST00000483690 RASEFQ8IZ41 740 aa17.85■□□□□ 0.45
MCF2-207ENST00000483690 RNF25Q96BH1 459 aaPredicted RBP17.85■□□□□ 0.45
MCF2-207ENST00000483690 TAOK2Q9UL54 1235 aa17.83■□□□□ 0.44
MCF2-207ENST00000483690 HS6ST3Q8IZP7 471 aa17.81■□□□□ 0.44
MCF2-207ENST00000483690 SPRYD3Q8NCJ5 442 aa17.81■□□□□ 0.44
MCF2-207ENST00000483690 RIOK3O14730 519 aaKnown RBP17.8■□□□□ 0.44
MCF2-207ENST00000483690 VSIG10Q8N0Z9 540 aa17.8■□□□□ 0.44
MCF2-207ENST00000483690 POTEHQ6S545 545 aa17.77■□□□□ 0.44
MCF2-207ENST00000483690 CHRM1P11229 460 aaPredicted RBP17.75■□□□□ 0.43
MCF2-207ENST00000483690 CHADLQ6NUI6 762 aa17.74■□□□□ 0.43
MCF2-207ENST00000483690 VGFO15240 615 aaPredicted RBP17.68■□□□□ 0.42
MCF2-207ENST00000483690 CHRDL2Q6WN34 429 aa17.68■□□□□ 0.42
MCF2-207ENST00000483690 PYGBP11216 843 aa17.67■□□□□ 0.42
MCF2-207ENST00000483690 FARP1Q9Y4F1 1045 aaPredicted RBP17.66■□□□□ 0.42
MCF2-207ENST00000483690 DNAJC5Q9H3Z4 198 aa17.65■□□□□ 0.42
MCF2-207ENST00000483690 STK25O00506 426 aa17.62■□□□□ 0.41
MCF2-207ENST00000483690 PRKAR2AP13861 404 aaKnown RBP17.62■□□□□ 0.41
MCF2-207ENST00000483690 TSPYL2Q9H2G4 693 aaPredicted RBP17.6■□□□□ 0.41
MCF2-207ENST00000483690 TSHZ2Q9NRE2 1034 aa17.58■□□□□ 0.4
MCF2-207ENST00000483690 KDM2AQ9Y2K7 1162 aa17.57■□□□□ 0.4
MCF2-207ENST00000483690 SGIP1Q9BQI5 828 aa17.56■□□□□ 0.4
MCF2-207ENST00000483690 FXR2P51116 673 aaKnown RBP eCLIP17.55■□□□□ 0.4
MCF2-207ENST00000483690 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.52■□□□□ 0.4
MCF2-207ENST00000483690 BCANQ96GW7 911 aa17.52■□□□□ 0.4
MCF2-207ENST00000483690 ZFP91Q96JP5 570 aaPredicted RBP17.52■□□□□ 0.4
MCF2-207ENST00000483690 NKX1-1Q15270 411 aaPredicted RBP17.51■□□□□ 0.39
MCF2-207ENST00000483690 BCL11BQ9C0K0 894 aaPredicted RBP17.5■□□□□ 0.39
MCF2-207ENST00000483690 STK24Q9Y6E0 443 aa17.5■□□□□ 0.39
MCF2-207ENST00000483690 ZNF467Q7Z7K2 595 aaPredicted RBP17.47■□□□□ 0.39
MCF2-207ENST00000483690 GTPBP6O43824 516 aaPredicted RBP17.43■□□□□ 0.38
MCF2-207ENST00000483690 PAK3O75914 559 aaPredicted RBP17.42■□□□□ 0.38
MCF2-207ENST00000483690 CCDC61Q9Y6R9 512 aa17.4■□□□□ 0.38
MCF2-207ENST00000483690 PIP4P2Q8N4L2 257 aa17.39■□□□□ 0.37
MCF2-207ENST00000483690 RYDENQ9NUL5 291 aaKnown RBP17.38■□□□□ 0.37
MCF2-207ENST00000483690 PDAP1Q13442 181 aaKnown RBP17.35■□□□□ 0.37
MCF2-207ENST00000483690 PCDHB8Q9UN66 801 aa17.33■□□□□ 0.36
MCF2-207ENST00000483690 PCDHB13Q9Y5F0 798 aa17.33■□□□□ 0.36
MCF2-207ENST00000483690 ZNF579Q8NAF0 562 aaKnown RBP17.3■□□□□ 0.36
MCF2-207ENST00000483690 PSEN1P49768 467 aa17.24■□□□□ 0.35
MCF2-207ENST00000483690 MAP3K13O43283 966 aa17.19■□□□□ 0.34
MCF2-207ENST00000483690 KIF12Q96FN5 646 aa17.19■□□□□ 0.34
MCF2-207ENST00000483690 IFNL1Q8IU54 200 aa17.18■□□□□ 0.34
MCF2-207ENST00000483690 ZRANB1Q9UGI0 708 aa17.17■□□□□ 0.34
MCF2-207ENST00000483690 CD44P16070 742 aaKnown RBP17.16■□□□□ 0.34
MCF2-207ENST00000483690 NBR1Q14596 966 aa17.08■□□□□ 0.32
MCF2-207ENST00000483690 PHF12Q96QT6 1004 aa17.05■□□□□ 0.32
MCF2-207ENST00000483690 MFRPQ9BY79 579 aa17.05■□□□□ 0.32
MCF2-207ENST00000483690 CABP2Q9NPB3 220 aa17.04■□□□□ 0.32
MCF2-207ENST00000483690 EFCAB3Q8N7B9 438 aa17■□□□□ 0.31
MCF2-207ENST00000483690 SOX12O15370 315 aa16.97■□□□□ 0.31
MCF2-207ENST00000483690 PRKCSHP14314 528 aaPredicted RBP16.97■□□□□ 0.31
MCF2-207ENST00000483690 NLRP6P59044 892 aa16.97■□□□□ 0.31
MCF2-207ENST00000483690 HAX1O00165 279 aa16.94■□□□□ 0.3
MCF2-207ENST00000483690 C19orf67A6NJJ6 358 aa16.93■□□□□ 0.3
MCF2-207ENST00000483690 TPRNQ4KMQ1 711 aa16.91■□□□□ 0.3
MCF2-207ENST00000483690 CADPS2Q86UW7 1296 aa16.91■□□□□ 0.3
MCF2-207ENST00000483690 FBXO22Q8NEZ5 403 aa16.91■□□□□ 0.3
MCF2-207ENST00000483690 PHF8Q9UPP1 1060 aa16.91■□□□□ 0.3
MCF2-207ENST00000483690 WDR70Q9NW82 654 aa16.9■□□□□ 0.3
MCF2-207ENST00000483690 GOLGA2Q08379 1002 aa16.88■□□□□ 0.29
MCF2-207ENST00000483690 P3H3Q8IVL6 736 aa16.87■□□□□ 0.29
MCF2-207ENST00000483690 MS4A3Q96HJ5 214 aa16.87■□□□□ 0.29
MCF2-207ENST00000483690 TMEM106CQ9BVX2 250 aa16.87■□□□□ 0.29
MCF2-207ENST00000483690 PPP1R37O75864 691 aa16.85■□□□□ 0.29
MCF2-207ENST00000483690 SP7Q8TDD2 431 aaPredicted RBP16.81■□□□□ 0.28
MCF2-207ENST00000483690 TRPC6Q9Y210 931 aa16.79■□□□□ 0.28
MCF2-207ENST00000483690 MKRN3Q13064 507 aaKnown RBP16.76■□□□□ 0.27
MCF2-207ENST00000483690 TIE1P35590 1138 aa16.74■□□□□ 0.27
MCF2-207ENST00000483690 EVX2Q03828 476 aa16.73■□□□□ 0.27
MCF2-207ENST00000483690 MS4A4AQ96JQ5 239 aa16.72■□□□□ 0.27
MCF2-207ENST00000483690 KCNV2Q8TDN2 545 aa16.71■□□□□ 0.27
MCF2-207ENST00000483690 TTLL13PA6NNM8 815 aa16.69■□□□□ 0.26
MCF2-207ENST00000483690 BMP2KQ9NSY1 1161 aaPredicted RBP16.64■□□□□ 0.25
MCF2-207ENST00000483690 CLCN6P51797 869 aa16.63■□□□□ 0.25
MCF2-207ENST00000483690 GALR2O43603 387 aaPredicted RBP16.62■□□□□ 0.25
MCF2-207ENST00000483690 PDE4AP27815 886 aa16.6■□□□□ 0.25
MCF2-207ENST00000483690 E2F4Q16254 413 aa16.6■□□□□ 0.25
MCF2-207ENST00000483690 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.6■□□□□ 0.25
MCF2-207ENST00000483690 TRIM35Q9UPQ4 493 aa16.58■□□□□ 0.24
MCF2-207ENST00000483690 NCKAP5LQ9HCH0 1330 aa16.58■□□□□ 0.24
MCF2-207ENST00000483690 LARP6Q9BRS8 491 aaKnown RBP16.57■□□□□ 0.24
MCF2-207ENST00000483690 ARHGEF1Q92888 912 aaKnown RBP16.56■□□□□ 0.24
MCF2-207ENST00000483690 ILDR1Q86SU0 546 aaPredicted RBP16.54■□□□□ 0.24
MCF2-207ENST00000483690 CRISPLD2Q9H0B8 497 aa16.53■□□□□ 0.24
MCF2-207ENST00000483690 MFSD10Q14728 455 aa16.51■□□□□ 0.23
MCF2-207ENST00000483690 DDX27Q96GQ7 796 aaKnown RBP16.5■□□□□ 0.23
MCF2-207ENST00000483690 TULP1O00294 542 aaPredicted RBP16.46■□□□□ 0.23
MCF2-207ENST00000483690 ATN1P54259 1190 aaPredicted RBP16.44■□□□□ 0.22
MCF2-207ENST00000483690 ATMINO43313 823 aaPredicted RBP16.41■□□□□ 0.22
MCF2-207ENST00000483690 LMOD2Q6P5Q4 547 aa16.41■□□□□ 0.22
MCF2-207ENST00000483690 DPY19L2Q6NUT2 758 aa16.4■□□□□ 0.22
MCF2-207ENST00000483690 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.4■□□□□ 0.22
MCF2-207ENST00000483690 GABBR2O75899 941 aa16.39■□□□□ 0.21
MCF2-207ENST00000483690 ASTLQ6HA08 431 aaPredicted RBP16.38■□□□□ 0.21
MCF2-207ENST00000483690 IER5LQ5T953 404 aa16.37■□□□□ 0.21
MCF2-207ENST00000483690 PDCD7Q8N8D1 485 aaKnown RBP16.37■□□□□ 0.21
MCF2-207ENST00000483690 GPHNQ9NQX3 736 aaPredicted RBP16.37■□□□□ 0.21
MCF2-207ENST00000483690 MICALL2Q8IY33 904 aa16.36■□□□□ 0.21
MCF2-207ENST00000483690 SEMA3EO15041 775 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms