RNA–Protein interactions for RNA: ENST00000483065.1

R3HDM1-216, Transcript of R3H domain containing 1, humanhuman

TSL 3

Gene R3HDM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-216ENST00000483065 FARP1Q9Y4F1 1045 aaPredicted RBP9.77□□□□□ -0.85
R3HDM1-216ENST00000483065 PRKCSHP14314 528 aaPredicted RBP9.75□□□□□ -0.85
R3HDM1-216ENST00000483065 SCUBE2Q9NQ36 999 aa9.74□□□□□ -0.85
R3HDM1-216ENST00000483065 METRNQ9UJH8 293 aa9.73□□□□□ -0.85
R3HDM1-216ENST00000483065 VSIG10Q8N0Z9 540 aa9.72□□□□□ -0.85
R3HDM1-216ENST00000483065 PRR29P0C7W0 189 aa9.71□□□□□ -0.86
R3HDM1-216ENST00000483065 ZRANB1Q9UGI0 708 aa9.7□□□□□ -0.86
R3HDM1-216ENST00000483065 ATF5Q9Y2D1 282 aaPredicted RBP9.7□□□□□ -0.86
R3HDM1-216ENST00000483065 ATXN8OSP0DMR3 200 aa9.67□□□□□ -0.86
R3HDM1-216ENST00000483065 C7P10643 843 aa9.66□□□□□ -0.86
R3HDM1-216ENST00000483065 TPRNQ4KMQ1 711 aa9.65□□□□□ -0.86
R3HDM1-216ENST00000483065 SLC39A7Q92504 469 aa9.63□□□□□ -0.87
R3HDM1-216ENST00000483065 SSUH2Q9Y2M2 353 aa9.57□□□□□ -0.88
R3HDM1-216ENST00000483065 ASTLQ6HA08 431 aaPredicted RBP9.55□□□□□ -0.88
R3HDM1-216ENST00000483065 ST18O60284 1047 aa9.54□□□□□ -0.88
R3HDM1-216ENST00000483065 HOMEZQ8IX15 550 aa9.51□□□□□ -0.89
R3HDM1-216ENST00000483065 DCAF8L2P0C7V8 631 aa9.5□□□□□ -0.89
R3HDM1-216ENST00000483065 ZNF692Q9BU19 519 aaPredicted RBP9.49□□□□□ -0.89
R3HDM1-216ENST00000483065 ATMINO43313 823 aaPredicted RBP9.48□□□□□ -0.89
R3HDM1-216ENST00000483065 FBXO3Q9UK99 471 aa9.48□□□□□ -0.89
R3HDM1-216ENST00000483065 TIMELESSQ9UNS1 1208 aa9.48□□□□□ -0.89
R3HDM1-216ENST00000483065 TULP1O00294 542 aaPredicted RBP9.47□□□□□ -0.89
R3HDM1-216ENST00000483065 PHF12Q96QT6 1004 aa9.44□□□□□ -0.9
R3HDM1-216ENST00000483065 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.43□□□□□ -0.9
R3HDM1-216ENST00000483065 GTF3C3Q9Y5Q9 886 aa9.42□□□□□ -0.9
R3HDM1-216ENST00000483065 POTEFA5A3E0 1075 aa9.39□□□□□ -0.91
R3HDM1-216ENST00000483065 RANGAP1P46060 587 aaPredicted RBP9.39□□□□□ -0.91
R3HDM1-216ENST00000483065 FBLN2P98095 1184 aa9.38□□□□□ -0.91
R3HDM1-216ENST00000483065 TMEM121BQ9BXQ6 578 aaPredicted RBP9.32□□□□□ -0.92
R3HDM1-216ENST00000483065 PABPN1Q86U42 306 aaKnown RBP eCLIP9.3□□□□□ -0.92
R3HDM1-216ENST00000483065 PAK3O75914 559 aaPredicted RBP9.28□□□□□ -0.92
R3HDM1-216ENST00000483065 BBXQ8WY36 941 aaPredicted RBP9.28□□□□□ -0.92
R3HDM1-216ENST00000483065 MS4A3Q96HJ5 214 aa9.28□□□□□ -0.92
R3HDM1-216ENST00000483065 ATN1P54259 1190 aaPredicted RBP9.27□□□□□ -0.93
R3HDM1-216ENST00000483065 NBR1Q14596 966 aa9.27□□□□□ -0.93
R3HDM1-216ENST00000483065 KDM2AQ9Y2K7 1162 aa9.25□□□□□ -0.93
R3HDM1-216ENST00000483065 KRTAP3-3Q9BYR6 98 aa9.24□□□□□ -0.93
R3HDM1-216ENST00000483065 KRTAP3-2Q9BYR7 98 aa9.24□□□□□ -0.93
R3HDM1-216ENST00000483065 SLAIN1Q8ND83 568 aa9.23□□□□□ -0.93
R3HDM1-216ENST00000483065 TMEM132AQ24JP5 1023 aa9.21□□□□□ -0.94
R3HDM1-216ENST00000483065 C14orf37Q86TY3 774 aa9.21□□□□□ -0.94
R3HDM1-216ENST00000483065 MARVELD3Q96A59 401 aa9.2□□□□□ -0.94
R3HDM1-216ENST00000483065 PAXIP1Q6ZW49 1069 aaPredicted RBP9.19□□□□□ -0.94
R3HDM1-216ENST00000483065 MKRN4PQ13434 485 aaPredicted RBP9.18□□□□□ -0.94
R3HDM1-216ENST00000483065 CFAP44Q96MT7 982 aa9.17□□□□□ -0.94
R3HDM1-216ENST00000483065 VASPP50552 380 aaPredicted RBP9.15□□□□□ -0.94
R3HDM1-216ENST00000483065 CREBZFQ9NS37 354 aa9.15□□□□□ -0.94
R3HDM1-216ENST00000483065 COLQQ9Y215 455 aaPredicted RBP9.14□□□□□ -0.95
R3HDM1-216ENST00000483065 SPRYD3Q8NCJ5 442 aa9.12□□□□□ -0.95
R3HDM1-216ENST00000483065 PKD2Q13563 968 aa9.08□□□□□ -0.96
R3HDM1-216ENST00000483065 SEC24BO95487 1268 aa9.07□□□□□ -0.96
R3HDM1-216ENST00000483065 RNF166Q96A37 237 aaPredicted RBP9.07□□□□□ -0.96
R3HDM1-216ENST00000483065 POTEB3A0JP26 581 aa9.04□□□□□ -0.96
R3HDM1-216ENST00000483065 POTEBQ6S5H4 581 aa9.04□□□□□ -0.96
R3HDM1-216ENST00000483065 BMP2KQ9NSY1 1161 aaPredicted RBP9.04□□□□□ -0.96
R3HDM1-216ENST00000483065 PODXL2Q9NZ53 605 aa9.04□□□□□ -0.96
R3HDM1-216ENST00000483065 SNPHO15079 494 aa9.02□□□□□ -0.97
R3HDM1-216ENST00000483065 IFNLR1Q8IU57 520 aaPredicted RBP9.01□□□□□ -0.97
R3HDM1-216ENST00000483065 HS3ST6Q96QI5 342 aa9.01□□□□□ -0.97
R3HDM1-216ENST00000483065 SPDYE4A6NLX3 237 aa8.99□□□□□ -0.97
R3HDM1-216ENST00000483065 EMP3P54852 163 aa8.99□□□□□ -0.97
R3HDM1-216ENST00000483065 ECM2O94769 699 aaPredicted RBP8.98□□□□□ -0.97
R3HDM1-216ENST00000483065 TSHZ2Q9NRE2 1034 aa8.98□□□□□ -0.97
R3HDM1-216ENST00000483065 DNAJC5Q9H3Z4 198 aa8.94□□□□□ -0.98
R3HDM1-216ENST00000483065 FAM205CA6NFA0 338 aa8.92□□□□□ -0.98
R3HDM1-216ENST00000483065 PROM2Q8N271 834 aa8.92□□□□□ -0.98
R3HDM1-216ENST00000483065 NPM1P06748 294 aaKnown RBP eCLIP8.91□□□□□ -0.98
R3HDM1-216ENST00000483065 TIE1P35590 1138 aa8.91□□□□□ -0.98
R3HDM1-216ENST00000483065 TRPC6Q9Y210 931 aa8.91□□□□□ -0.98
R3HDM1-216ENST00000483065 SPOCK2Q92563 424 aa8.9□□□□□ -0.98
R3HDM1-216ENST00000483065 IER5LQ5T953 404 aa8.89□□□□□ -0.99
R3HDM1-216ENST00000483065 MYT1LQ9UL68 1186 aa8.88□□□□□ -0.99
R3HDM1-216ENST00000483065 NPM2Q86SE8 214 aaKnown RBP8.85□□□□□ -0.99
R3HDM1-216ENST00000483065 KLHL34Q8N239 644 aa8.85□□□□□ -0.99
R3HDM1-216ENST00000483065 TTLL13PA6NNM8 815 aa8.82□□□□□ -1
R3HDM1-216ENST00000483065 MNX1P50219 401 aaPredicted RBP8.82□□□□□ -1
R3HDM1-216ENST00000483065 KIF12Q96FN5 646 aa8.81□□□□□ -1
R3HDM1-216ENST00000483065 CHGAP10645 457 aaKnown RBP8.78□□□□□ -1
R3HDM1-216ENST00000483065 SUPT5HO00267 1087 aaKnown RBP8.77□□□□□ -1.01
R3HDM1-216ENST00000483065 CCDC61Q9Y6R9 512 aa8.77□□□□□ -1.01
R3HDM1-216ENST00000483065 TRIM35Q9UPQ4 493 aa8.76□□□□□ -1.01
R3HDM1-216ENST00000483065 RGL2O15211 777 aa8.73□□□□□ -1.01
R3HDM1-216ENST00000483065 STAG3Q9UJ98 1225 aa8.73□□□□□ -1.01
R3HDM1-216ENST00000483065 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.72□□□□□ -1.01
R3HDM1-216ENST00000483065 P3H3Q8IVL6 736 aa8.7□□□□□ -1.02
R3HDM1-216ENST00000483065 PLA2G2EQ9NZK7 142 aa8.7□□□□□ -1.02
R3HDM1-216ENST00000483065 PLCG2P16885 1265 aa8.69□□□□□ -1.02
R3HDM1-216ENST00000483065 MYT1Q01538 1121 aa8.69□□□□□ -1.02
R3HDM1-216ENST00000483065 TRIM41Q8WV44 630 aa8.69□□□□□ -1.02
R3HDM1-216ENST00000483065 TSPYL2Q9H2G4 693 aaPredicted RBP8.69□□□□□ -1.02
R3HDM1-216ENST00000483065 MAP3K13O43283 966 aa8.67□□□□□ -1.02
R3HDM1-216ENST00000483065 HS6ST3Q8IZP7 471 aa8.66□□□□□ -1.02
R3HDM1-216ENST00000483065 TRIM26Q12899 539 aaPredicted RBP8.64□□□□□ -1.03
R3HDM1-216ENST00000483065 TTBK1Q5TCY1 1321 aaPredicted RBP8.63□□□□□ -1.03
R3HDM1-216ENST00000483065 PTGER2P43116 358 aa8.62□□□□□ -1.03
R3HDM1-216ENST00000483065 IRX5P78411 483 aaPredicted RBP8.61□□□□□ -1.03
R3HDM1-216ENST00000483065 CCDC9Q9Y3X0 531 aaKnown RBP8.61□□□□□ -1.03
R3HDM1-216ENST00000483065 UBTFP17480 764 aaKnown RBP8.6□□□□□ -1.03
R3HDM1-216ENST00000483065 BRPF1P55201 1214 aaPredicted RBP8.6□□□□□ -1.03
R3HDM1-216ENST00000483065 PLCD3Q8N3E9 789 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 183 ms