RNA–Protein interactions for RNA: ENST00000481522.1

COPA-204, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 578 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-204ENST00000481522 CREBZFQ9NS37 354 aa14.4□□□□□ -0.1
COPA-204ENST00000481522 ZBTB22O15209 634 aa14.38□□□□□ -0.11
COPA-204ENST00000481522 SLC4A1APQ9BWU0 796 aaKnown RBP14.36□□□□□ -0.11
COPA-204ENST00000481522 MMRN1Q13201 1228 aa14.35□□□□□ -0.11
COPA-204ENST00000481522 PAK3O75914 559 aaPredicted RBP14.27□□□□□ -0.13
COPA-204ENST00000481522 MS4A3Q96HJ5 214 aa14.27□□□□□ -0.13
COPA-204ENST00000481522 POTEFA5A3E0 1075 aa14.25□□□□□ -0.13
COPA-204ENST00000481522 SPNS2Q8IVW8 549 aa14.24□□□□□ -0.13
COPA-204ENST00000481522 ATN1P54259 1190 aaPredicted RBP14.16□□□□□ -0.14
COPA-204ENST00000481522 ST18O60284 1047 aa14.09□□□□□ -0.15
COPA-204ENST00000481522 MNX1P50219 401 aaPredicted RBP14.02□□□□□ -0.17
COPA-204ENST00000481522 NPM1P06748 294 aaKnown RBP eCLIP13.95□□□□□ -0.18
COPA-204ENST00000481522 BMP2KQ9NSY1 1161 aaPredicted RBP13.95□□□□□ -0.18
COPA-204ENST00000481522 COLQQ9Y215 455 aaPredicted RBP13.95□□□□□ -0.18
COPA-204ENST00000481522 STAG3Q9UJ98 1225 aa13.94□□□□□ -0.18
COPA-204ENST00000481522 TRPC6Q9Y210 931 aa13.89□□□□□ -0.19
COPA-204ENST00000481522 SLAIN1Q8ND83 568 aa13.84□□□□□ -0.19
COPA-204ENST00000481522 TMEM121BQ9BXQ6 578 aaPredicted RBP13.8□□□□□ -0.2
COPA-204ENST00000481522 CCDC61Q9Y6R9 512 aa13.8□□□□□ -0.2
COPA-204ENST00000481522 TIE1P35590 1138 aa13.78□□□□□ -0.2
COPA-204ENST00000481522 KIF12Q96FN5 646 aa13.78□□□□□ -0.2
COPA-204ENST00000481522 SEC24BO95487 1268 aa13.77□□□□□ -0.21
COPA-204ENST00000481522 TSPYL2Q9H2G4 693 aaPredicted RBP13.71□□□□□ -0.21
COPA-204ENST00000481522 TTLL13PA6NNM8 815 aa13.7□□□□□ -0.22
COPA-204ENST00000481522 MARVELD3Q96A59 401 aa13.7□□□□□ -0.22
COPA-204ENST00000481522 KRTAP3-3Q9BYR6 98 aa13.67□□□□□ -0.22
COPA-204ENST00000481522 KRTAP3-2Q9BYR7 98 aa13.67□□□□□ -0.22
COPA-204ENST00000481522 IER5LQ5T953 404 aa13.66□□□□□ -0.22
COPA-204ENST00000481522 MAP3K13O43283 966 aa13.61□□□□□ -0.23
COPA-204ENST00000481522 TRIM35Q9UPQ4 493 aa13.59□□□□□ -0.23
COPA-204ENST00000481522 POTEB3A0JP26 581 aa13.54□□□□□ -0.24
COPA-204ENST00000481522 POTEBQ6S5H4 581 aa13.54□□□□□ -0.24
COPA-204ENST00000481522 SNPHO15079 494 aa13.5□□□□□ -0.25
COPA-204ENST00000481522 HS3ST6Q96QI5 342 aa13.46□□□□□ -0.25
COPA-204ENST00000481522 EMP3P54852 163 aa13.45□□□□□ -0.26
COPA-204ENST00000481522 PLCG2P16885 1265 aa13.41□□□□□ -0.26
COPA-204ENST00000481522 IRX5P78411 483 aaPredicted RBP13.39□□□□□ -0.27
COPA-204ENST00000481522 FAM205CA6NFA0 338 aa13.34□□□□□ -0.27
COPA-204ENST00000481522 SPDYE4A6NLX3 237 aa13.34□□□□□ -0.27
COPA-204ENST00000481522 RNF166Q96A37 237 aaPredicted RBP13.31□□□□□ -0.28
COPA-204ENST00000481522 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.31□□□□□ -0.28
COPA-204ENST00000481522 RASEFQ8IZ41 740 aa13.3□□□□□ -0.28
COPA-204ENST00000481522 SGIP1Q9BQI5 828 aa13.3□□□□□ -0.28
COPA-204ENST00000481522 PCDHB13Q9Y5F0 798 aa13.25□□□□□ -0.29
COPA-204ENST00000481522 TMEM106CQ9BVX2 250 aa13.22□□□□□ -0.29
COPA-204ENST00000481522 OCEL1Q9H607 264 aa13.21□□□□□ -0.29
COPA-204ENST00000481522 IFNL1Q8IU54 200 aa13.19□□□□□ -0.3
COPA-204ENST00000481522 MYT1LQ9UL68 1186 aa13.1□□□□□ -0.31
COPA-204ENST00000481522 C3orf67Q6ZVT6 689 aa13.01□□□□□ -0.33
COPA-204ENST00000481522 PDCD7Q8N8D1 485 aaKnown RBP12.99□□□□□ -0.33
COPA-204ENST00000481522 CSRNP3Q8WYN3 585 aa12.98□□□□□ -0.33
COPA-204ENST00000481522 PROM2Q8N271 834 aa12.94□□□□□ -0.34
COPA-204ENST00000481522 HOXB3P14651 431 aaPredicted RBP12.93□□□□□ -0.34
COPA-204ENST00000481522 HOXB1P14653 301 aaPredicted RBP12.91□□□□□ -0.34
COPA-204ENST00000481522 ERBB3P21860 1342 aa12.88□□□□□ -0.35
COPA-204ENST00000481522 NUBP1P53384 320 aa12.86□□□□□ -0.35
COPA-204ENST00000481522 L3MBTL3Q96JM7 780 aaPredicted RBP12.85□□□□□ -0.35
COPA-204ENST00000481522 PLEKHG5O94827 1062 aa12.84□□□□□ -0.35
COPA-204ENST00000481522 PTGER2P43116 358 aa12.84□□□□□ -0.35
COPA-204ENST00000481522 MIER1Q8N108 512 aa12.81□□□□□ -0.36
COPA-204ENST00000481522 VARS2Q5ST30 1063 aaKnown RBP12.8□□□□□ -0.36
COPA-204ENST00000481522 PLA2G2EQ9NZK7 142 aa12.77□□□□□ -0.37
COPA-204ENST00000481522 ZNF687Q8N1G0 1237 aa12.74□□□□□ -0.37
COPA-204ENST00000481522 ZNF710Q8N1W2 664 aa12.72□□□□□ -0.37
COPA-204ENST00000481522 FAM212AQ96EL1 285 aa12.69□□□□□ -0.38
COPA-204ENST00000481522 PCDHB8Q9UN66 801 aa12.68□□□□□ -0.38
COPA-204ENST00000481522 EHMT2Q96KQ7 1210 aa12.66□□□□□ -0.38
COPA-204ENST00000481522 DOK7Q18PE1 504 aa12.65□□□□□ -0.38
COPA-204ENST00000481522 ILDR1Q86SU0 546 aaPredicted RBP12.64□□□□□ -0.39
COPA-204ENST00000481522 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.62□□□□□ -0.392e-11■□□□□ 10.1
COPA-204ENST00000481522 MKRN3Q13064 507 aaKnown RBP12.61□□□□□ -0.39
COPA-204ENST00000481522 PYGBP11216 843 aa12.59□□□□□ -0.39
COPA-204ENST00000481522 DPY19L2Q6NUT2 758 aa12.57□□□□□ -0.4
COPA-204ENST00000481522 ANKRD13DQ6ZTN6 518 aa12.57□□□□□ -0.4
COPA-204ENST00000481522 PLCD3Q8N3E9 789 aa12.55□□□□□ -0.4
COPA-204ENST00000481522 ZBTB47Q9UFB7 747 aaPredicted RBP12.53□□□□□ -0.4
COPA-204ENST00000481522 GOLGA2Q08379 1002 aa12.52□□□□□ -0.41
COPA-204ENST00000481522 RIMBP2O15034 1052 aa12.51□□□□□ -0.41
COPA-204ENST00000481522 BOLA1Q9Y3E2 137 aa12.51□□□□□ -0.41
COPA-204ENST00000481522 LSM11P83369 360 aaKnown RBP eCLIP12.49□□□□□ -0.41
COPA-204ENST00000481522 HCSTQ9UBK5 93 aa12.48□□□□□ -0.41
COPA-204ENST00000481522 GPR153Q6NV75 609 aa12.47□□□□□ -0.41
COPA-204ENST00000481522 ZSWIM6Q9HCJ5 1215 aa12.47□□□□□ -0.41
COPA-204ENST00000481522 IRX2Q9BZI1 471 aaPredicted RBP12.4□□□□□ -0.42
COPA-204ENST00000481522 G3V3G9 751 aa12.37□□□□□ -0.43
COPA-204ENST00000481522 DCAF8Q5TAQ9 597 aa12.37□□□□□ -0.43
COPA-204ENST00000481522 ZNF467Q7Z7K2 595 aaPredicted RBP12.35□□□□□ -0.43
COPA-204ENST00000481522 RGS20O76081 388 aa12.31□□□□□ -0.44
COPA-204ENST00000481522 PSEN1P49768 467 aa12.31□□□□□ -0.44
COPA-204ENST00000481522 TMEM92Q6UXU6 159 aa12.3□□□□□ -0.44
COPA-204ENST00000481522 ZNF316A6NFI3 1004 aaPredicted RBP12.29□□□□□ -0.44
COPA-204ENST00000481522 POTEEQ6S8J3 1075 aa12.29□□□□□ -0.44
COPA-204ENST00000481522 ARSIQ5FYB1 569 aa12.25□□□□□ -0.45
COPA-204ENST00000481522 PBX2P40425 430 aa12.23□□□□□ -0.45
COPA-204ENST00000481522 KHSRPQ92945 711 aaKnown RBP eCLIP12.2□□□□□ -0.46
COPA-204ENST00000481522 CABP2Q9NPB3 220 aa12.17□□□□□ -0.46
COPA-204ENST00000481522 AXIN2Q9Y2T1 843 aa12.16□□□□□ -0.46
COPA-204ENST00000481522 CHRM1P11229 460 aaPredicted RBP12.12□□□□□ -0.47
COPA-204ENST00000481522 ADGRD1Q6QNK2 874 aa12.12□□□□□ -0.47
COPA-204ENST00000481522 PDAP1Q13442 181 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms