RNA–Protein interactions for RNA: ENST00000481173.1

CCNL1-223, Transcript of cyclin L1, human

TSL 2

Gene CCNL1, Length 571 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-223	ENST00000481173	POTEB2	H3BUK9	544 aa		12.44	□□□□□ -0.42
CCNL1-223	ENST00000481173	PLCD3	Q8N3E9	789 aa		12.44	□□□□□ -0.42
CCNL1-223	ENST00000481173	RASEF	Q8IZ41	740 aa		12.43	□□□□□ -0.42
CCNL1-223	ENST00000481173	ATMIN	O43313	823 aa	Predicted RBP	12.4	□□□□□ -0.42
CCNL1-223	ENST00000481173	ASTL	Q6HA08	431 aa	Predicted RBP	12.4	□□□□□ -0.42
CCNL1-223	ENST00000481173	KIF12	Q96FN5	646 aa		12.4	□□□□□ -0.42
CCNL1-223	ENST00000481173	OTUD5	Q96G74	571 aa		12.38	□□□□□ -0.43
CCNL1-223	ENST00000481173	METRN	Q9UJH8	293 aa		12.36	□□□□□ -0.43
CCNL1-223	ENST00000481173	MAP3K13	O43283	966 aa		12.35	□□□□□ -0.43
CCNL1-223	ENST00000481173	TRPC6	Q9Y210	931 aa		12.35	□□□□□ -0.43
CCNL1-223	ENST00000481173	ATN1	P54259	1190 aa	Predicted RBP	12.33	□□□□□ -0.44
CCNL1-223	ENST00000481173	SLC39A7	Q92504	469 aa		12.32	□□□□□ -0.44
CCNL1-223	ENST00000481173	C7	P10643	843 aa		12.3	□□□□□ -0.44
CCNL1-223	ENST00000481173	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.3	□□□□□ -0.44
CCNL1-223	ENST00000481173	NUBP1	P53384	320 aa		12.28	□□□□□ -0.44
CCNL1-223	ENST00000481173	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.28	□□□□□ -0.44
CCNL1-223	ENST00000481173	POTEJ	P0CG39	1038 aa		12.25	□□□□□ -0.45
CCNL1-223	ENST00000481173	TIE1	P35590	1138 aa		12.22	□□□□□ -0.45
CCNL1-223	ENST00000481173	PCDHB13	Q9Y5F0	798 aa		12.21	□□□□□ -0.45
CCNL1-223	ENST00000481173	TTLL13P	A6NNM8	815 aa		12.19	□□□□□ -0.46
CCNL1-223	ENST00000481173	FAM212A	Q96EL1	285 aa		12.19	□□□□□ -0.46
CCNL1-223	ENST00000481173	POTEF	A5A3E0	1075 aa		12.18	□□□□□ -0.46
CCNL1-223	ENST00000481173	SGIP1	Q9BQI5	828 aa		12.15	□□□□□ -0.46
CCNL1-223	ENST00000481173	IFNL1	Q8IU54	200 aa		12.14	□□□□□ -0.47
CCNL1-223	ENST00000481173	FBXO3	Q9UK99	471 aa		12.14	□□□□□ -0.47
CCNL1-223	ENST00000481173	MAMSTR	Q6ZN01	415 aa		12.12	□□□□□ -0.47
CCNL1-223	ENST00000481173	TRIM35	Q9UPQ4	493 aa		12.12	□□□□□ -0.47
CCNL1-223	ENST00000481173	DCAF8	Q5TAQ9	597 aa		12.11	□□□□□ -0.47
CCNL1-223	ENST00000481173	COLQ	Q9Y215	455 aa	Predicted RBP	12.11	□□□□□ -0.47
CCNL1-223	ENST00000481173	SCUBE2	Q9NQ36	999 aa		12.1	□□□□□ -0.47
CCNL1-223	ENST00000481173	SEC24B	O95487	1268 aa		12.09	□□□□□ -0.47
CCNL1-223	ENST00000481173	PYGB	P11216	843 aa		12.07	□□□□□ -0.48
CCNL1-223	ENST00000481173	TMEM106C	Q9BVX2	250 aa		12.07	□□□□□ -0.48
CCNL1-223	ENST00000481173	POTEM	A6NI47	508 aa		12.06	□□□□□ -0.48
CCNL1-223	ENST00000481173	VASP	P50552	380 aa	Predicted RBP	12.05	□□□□□ -0.48
CCNL1-223	ENST00000481173	PLSCR2	Q9NRY7	297 aa		12.05	□□□□□ -0.48
CCNL1-223	ENST00000481173	KLHL34	Q8N239	644 aa		12.04	□□□□□ -0.48
CCNL1-223	ENST00000481173	POTEG	Q6S5H5	508 aa		12.03	□□□□□ -0.48
CCNL1-223	ENST00000481173	IER5L	Q5T953	404 aa		12.02	□□□□□ -0.49
CCNL1-223	ENST00000481173	FAM163A	Q96GL9	167 aa	Predicted RBP	11.99	□□□□□ -0.49
CCNL1-223	ENST00000481173	PCDHB8	Q9UN66	801 aa		11.99	□□□□□ -0.49
CCNL1-223	ENST00000481173	LCE2D	Q5TA82	110 aa	Predicted RBP	11.96	□□□□□ -0.49
CCNL1-223	ENST00000481173	PLCG2	P16885	1265 aa		11.94	□□□□□ -0.5
CCNL1-223	ENST00000481173	IRX5	P78411	483 aa	Predicted RBP	11.91	□□□□□ -0.5
CCNL1-223	ENST00000481173	GSE1	Q14687	1217 aa		11.91	□□□□□ -0.5
CCNL1-223	ENST00000481173	SLAIN1	Q8ND83	568 aa		11.87	□□□□□ -0.51
CCNL1-223	ENST00000481173	OCEL1	Q9H607	264 aa		11.85	□□□□□ -0.51
CCNL1-223	ENST00000481173	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.83	□□□□□ -0.52
CCNL1-223	ENST00000481173	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.83	□□□□□ -0.52
CCNL1-223	ENST00000481173	CHRM1	P11229	460 aa	Predicted RBP	11.8	□□□□□ -0.52
CCNL1-223	ENST00000481173	SPOCK2	Q92563	424 aa		11.8	□□□□□ -0.52
CCNL1-223	ENST00000481173	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.79	□□□□□ -0.52
CCNL1-223	ENST00000481173	PSEN1	P49768	467 aa		11.77	□□□□□ -0.53
CCNL1-223	ENST00000481173	PCDH10	Q9P2E7	1040 aa		11.77	□□□□□ -0.53
CCNL1-223	ENST00000481173	GOLGA2	Q08379	1002 aa		11.76	□□□□□ -0.53
CCNL1-223	ENST00000481173	MKRN3	Q13064	507 aa	Known RBP	11.75	□□□□□ -0.53
CCNL1-223	ENST00000481173	PDCD7	Q8N8D1	485 aa	Known RBP	11.74	□□□□□ -0.53
CCNL1-223	ENST00000481173	ST18	O60284	1047 aa		11.72	□□□□□ -0.53
CCNL1-223	ENST00000481173	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.72	□□□□□ -0.53
CCNL1-223	ENST00000481173	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.7	□□□□□ -0.54	1e-9	■■□□□ 12.1
CCNL1-223	ENST00000481173	PDAP1	Q13442	181 aa	Known RBP	11.69	□□□□□ -0.54
CCNL1-223	ENST00000481173	C3orf67	Q6ZVT6	689 aa		11.65	□□□□□ -0.54
CCNL1-223	ENST00000481173	CDAN1	Q8IWY9	1227 aa		11.65	□□□□□ -0.54
CCNL1-223	ENST00000481173	CABP2	Q9NPB3	220 aa		11.65	□□□□□ -0.54
CCNL1-223	ENST00000481173	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.63	□□□□□ -0.55
CCNL1-223	ENST00000481173	DPY19L2	Q6NUT2	758 aa		11.61	□□□□□ -0.55
CCNL1-223	ENST00000481173	SNPH	O15079	494 aa		11.59	□□□□□ -0.55
CCNL1-223	ENST00000481173	ILDR1	Q86SU0	546 aa	Predicted RBP	11.58	□□□□□ -0.56
CCNL1-223	ENST00000481173	MARVELD3	Q96A59	401 aa		11.57	□□□□□ -0.56
CCNL1-223	ENST00000481173	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.54	□□□□□ -0.56
CCNL1-223	ENST00000481173	TRIM41	Q8WV44	630 aa		11.52	□□□□□ -0.57
CCNL1-223	ENST00000481173	BOLA1	Q9Y3E2	137 aa		11.51	□□□□□ -0.57
CCNL1-223	ENST00000481173		G3V3G9	751 aa		11.5	□□□□□ -0.57
CCNL1-223	ENST00000481173	EFCAB3	Q8N7B9	438 aa		11.5	□□□□□ -0.57
CCNL1-223	ENST00000481173	RNF25	Q96BH1	459 aa	Predicted RBP	11.46	□□□□□ -0.57
CCNL1-223	ENST00000481173	EMP3	P54852	163 aa		11.45	□□□□□ -0.58
CCNL1-223	ENST00000481173	RIOK3	O14730	519 aa	Known RBP	11.44	□□□□□ -0.58
CCNL1-223	ENST00000481173	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.42	□□□□□ -0.58
CCNL1-223	ENST00000481173	ZFP91	Q96JP5	570 aa	Predicted RBP	11.42	□□□□□ -0.58
CCNL1-223	ENST00000481173	POTEB3	A0JP26	581 aa		11.39	□□□□□ -0.59
CCNL1-223	ENST00000481173	FAM205C	A6NFA0	338 aa		11.39	□□□□□ -0.59
CCNL1-223	ENST00000481173	POTEB	Q6S5H4	581 aa		11.39	□□□□□ -0.59
CCNL1-223	ENST00000481173	HOXB3	P14651	431 aa	Predicted RBP	11.38	□□□□□ -0.59
CCNL1-223	ENST00000481173	VGF	O15240	615 aa	Predicted RBP	11.37	□□□□□ -0.59
CCNL1-223	ENST00000481173	SPNS2	Q8IVW8	549 aa		11.37	□□□□□ -0.59
CCNL1-223	ENST00000481173	HS3ST6	Q96QI5	342 aa		11.37	□□□□□ -0.59
CCNL1-223	ENST00000481173	MICALL2	Q8IY33	904 aa		11.35	□□□□□ -0.59
CCNL1-223	ENST00000481173	MMRN1	Q13201	1228 aa		11.34	□□□□□ -0.59
CCNL1-223	ENST00000481173	MS4A4A	Q96JQ5	239 aa		11.34	□□□□□ -0.59
CCNL1-223	ENST00000481173	PHF8	Q9UPP1	1060 aa		11.34	□□□□□ -0.59
CCNL1-223	ENST00000481173	SOX12	O15370	315 aa		11.33	□□□□□ -0.6
CCNL1-223	ENST00000481173	ZNF710	Q8N1W2	664 aa		11.32	□□□□□ -0.6
CCNL1-223	ENST00000481173	TMEM92	Q6UXU6	159 aa		11.31	□□□□□ -0.6
CCNL1-223	ENST00000481173	DOK7	Q18PE1	504 aa		11.29	□□□□□ -0.6
CCNL1-223	ENST00000481173	KRTAP3-3	Q9BYR6	98 aa		11.29	□□□□□ -0.6
CCNL1-223	ENST00000481173	KRTAP3-2	Q9BYR7	98 aa		11.29	□□□□□ -0.6
CCNL1-223	ENST00000481173	HOXB1	P14653	301 aa	Predicted RBP	11.28	□□□□□ -0.6
CCNL1-223	ENST00000481173	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.27	□□□□□ -0.61
CCNL1-223	ENST00000481173	STK24	Q9Y6E0	443 aa		11.25	□□□□□ -0.61
CCNL1-223	ENST00000481173	ERBB3	P21860	1342 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 75 ms