RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 SCUBE2Q9NQ36 999 aa16.33■□□□□ 0.2
VPS50-215ENST00000480943 FAM163AQ96GL9 167 aaPredicted RBP16.3■□□□□ 0.2
VPS50-215ENST00000480943 ATMINO43313 823 aaPredicted RBP16.23■□□□□ 0.19
VPS50-215ENST00000480943 LCE2DQ5TA82 110 aaPredicted RBP16.21■□□□□ 0.19
VPS50-215ENST00000480943 POTEJP0CG39 1038 aa16.2■□□□□ 0.18
VPS50-215ENST00000480943 MS4A3Q96HJ5 214 aa16.17■□□□□ 0.18
VPS50-215ENST00000480943 CDAN1Q8IWY9 1227 aa16.05■□□□□ 0.16
VPS50-215ENST00000480943 MNX1P50219 401 aaPredicted RBP16.01■□□□□ 0.15
VPS50-215ENST00000480943 ATN1P54259 1190 aaPredicted RBP15.99■□□□□ 0.15
VPS50-215ENST00000480943 EHMT2Q96KQ7 1210 aa15.94■□□□□ 0.14
VPS50-215ENST00000480943 SPDYE4A6NLX3 237 aa15.89■□□□□ 0.13
VPS50-215ENST00000480943 TSPYL2Q9H2G4 693 aaPredicted RBP15.86■□□□□ 0.13
VPS50-215ENST00000480943 CSRNP3Q8WYN3 585 aa15.85■□□□□ 0.13
VPS50-215ENST00000480943 SEC24BO95487 1268 aa15.84■□□□□ 0.13
VPS50-215ENST00000480943 POTEFA5A3E0 1075 aa15.83■□□□□ 0.12
VPS50-215ENST00000480943 BMP2KQ9NSY1 1161 aaPredicted RBP15.83■□□□□ 0.12
VPS50-215ENST00000480943 TIE1P35590 1138 aa15.82■□□□□ 0.12
VPS50-215ENST00000480943 CCDC61Q9Y6R9 512 aa15.82■□□□□ 0.12
VPS50-215ENST00000480943 KIF12Q96FN5 646 aa15.79■□□□□ 0.12
VPS50-215ENST00000480943 MMRN1Q13201 1228 aa15.72■□□□□ 0.11
VPS50-215ENST00000480943 ST18O60284 1047 aa15.7■□□□□ 0.1
VPS50-215ENST00000480943 IER5LQ5T953 404 aa15.7■□□□□ 0.1
VPS50-215ENST00000480943 SLAIN1Q8ND83 568 aa15.68■□□□□ 0.1
VPS50-215ENST00000480943 COLQQ9Y215 455 aaPredicted RBP15.68■□□□□ 0.1
VPS50-215ENST00000480943 SPNS2Q8IVW8 549 aa15.65■□□□□ 0.1
VPS50-215ENST00000480943 TRPC6Q9Y210 931 aa15.64■□□□□ 0.09
VPS50-215ENST00000480943 TTLL13PA6NNM8 815 aa15.63■□□□□ 0.09
VPS50-215ENST00000480943 MAP3K13O43283 966 aa15.63■□□□□ 0.09
VPS50-215ENST00000480943 TMEM121BQ9BXQ6 578 aaPredicted RBP15.61■□□□□ 0.09
VPS50-215ENST00000480943 PLEKHG5O94827 1062 aa15.58■□□□□ 0.08
VPS50-215ENST00000480943 TRIM35Q9UPQ4 493 aa15.55■□□□□ 0.08
VPS50-215ENST00000480943 SNPHO15079 494 aa15.53■□□□□ 0.08
VPS50-215ENST00000480943 SGIP1Q9BQI5 828 aa15.52■□□□□ 0.08
VPS50-215ENST00000480943 PLCG2P16885 1265 aa15.46■□□□□ 0.07
VPS50-215ENST00000480943 PCDHB13Q9Y5F0 798 aa15.41■□□□□ 0.06
VPS50-215ENST00000480943 RASEFQ8IZ41 740 aa15.38■□□□□ 0.05
VPS50-215ENST00000480943 MIER1Q8N108 512 aa15.32■□□□□ 0.04
VPS50-215ENST00000480943 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.32■□□□□ 0.04
VPS50-215ENST00000480943 MARVELD3Q96A59 401 aa15.3■□□□□ 0.04
VPS50-215ENST00000480943 TMEM106CQ9BVX2 250 aa15.3■□□□□ 0.04
VPS50-215ENST00000480943 PROM2Q8N271 834 aa15.29■□□□□ 0.04
VPS50-215ENST00000480943 IRX5P78411 483 aaPredicted RBP15.27■□□□□ 0.04
VPS50-215ENST00000480943 OCEL1Q9H607 264 aa15.25■□□□□ 0.03
VPS50-215ENST00000480943 EMP3P54852 163 aa15.23■□□□□ 0.03
VPS50-215ENST00000480943 IFNL1Q8IU54 200 aa15.22■□□□□ 0.03
VPS50-215ENST00000480943 ZBTB47Q9UFB7 747 aaPredicted RBP15.19■□□□□ 0.02
VPS50-215ENST00000480943 PLCD3Q8N3E9 789 aa15.1■□□□□ 0.01
VPS50-215ENST00000480943 FAM212AQ96EL1 285 aa15.1■□□□□ 0.01
VPS50-215ENST00000480943 HS3ST6Q96QI5 342 aa15.1■□□□□ 0.01
VPS50-215ENST00000480943 KRTAP3-3Q9BYR6 98 aa15.1■□□□□ 0.01
VPS50-215ENST00000480943 KRTAP3-2Q9BYR7 98 aa15.1■□□□□ 0.01
VPS50-215ENST00000480943 C3orf67Q6ZVT6 689 aa15.08■□□□□ 0
VPS50-215ENST00000480943 NISCHQ9Y2I1 1504 aa15.07■□□□□ 0
VPS50-215ENST00000480943 FAM205CA6NFA0 338 aa15.05■□□□□ -0
VPS50-215ENST00000480943 NUBP1P53384 320 aa15.02■□□□□ -0
VPS50-215ENST00000480943 L3MBTL3Q96JM7 780 aaPredicted RBP15□□□□□ -0.01
VPS50-215ENST00000480943 POTEB3A0JP26 581 aa14.94□□□□□ -0.02
VPS50-215ENST00000480943 POTEBQ6S5H4 581 aa14.94□□□□□ -0.02
VPS50-215ENST00000480943 RNF166Q96A37 237 aaPredicted RBP14.9□□□□□ -0.02
VPS50-215ENST00000480943 GOLGA2Q08379 1002 aa14.88□□□□□ -0.03
VPS50-215ENST00000480943 PDCD7Q8N8D1 485 aaKnown RBP14.85□□□□□ -0.03
VPS50-215ENST00000480943 MKRN3Q13064 507 aaKnown RBP14.84□□□□□ -0.03
VPS50-215ENST00000480943 PYGBP11216 843 aa14.78□□□□□ -0.04
VPS50-215ENST00000480943 DCAF8Q5TAQ9 597 aa14.78□□□□□ -0.04
VPS50-215ENST00000480943 MYT1LQ9UL68 1186 aa14.76□□□□□ -0.05
VPS50-215ENST00000480943 PCDHB8Q9UN66 801 aa14.76□□□□□ -0.05
VPS50-215ENST00000480943 ZNF710Q8N1W2 664 aa14.74□□□□□ -0.05
VPS50-215ENST00000480943 ERBB3P21860 1342 aa14.73□□□□□ -0.05
VPS50-215ENST00000480943 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.73□□□□□ -0.05
VPS50-215ENST00000480943 G3V3G9 751 aa14.71□□□□□ -0.05
VPS50-215ENST00000480943 HOXB1P14653 301 aaPredicted RBP14.71□□□□□ -0.05
VPS50-215ENST00000480943 ZNF467Q7Z7K2 595 aaPredicted RBP14.7□□□□□ -0.06
VPS50-215ENST00000480943 PTGER2P43116 358 aa14.69□□□□□ -0.06
VPS50-215ENST00000480943 DOK7Q18PE1 504 aa14.67□□□□□ -0.06
VPS50-215ENST00000480943 RIMBP2O15034 1052 aa14.63□□□□□ -0.07
VPS50-215ENST00000480943 HOXB3P14651 431 aaPredicted RBP14.63□□□□□ -0.07
VPS50-215ENST00000480943 VARS2Q5ST30 1063 aaKnown RBP14.55□□□□□ -0.08
VPS50-215ENST00000480943 BOLA1Q9Y3E2 137 aa14.55□□□□□ -0.08
VPS50-215ENST00000480943 ILDR1Q86SU0 546 aaPredicted RBP14.53□□□□□ -0.08
VPS50-215ENST00000480943 PSEN1P49768 467 aa14.51□□□□□ -0.09
VPS50-215ENST00000480943 ZNF687Q8N1G0 1237 aa14.51□□□□□ -0.09
VPS50-215ENST00000480943 GSE1Q14687 1217 aa14.5□□□□□ -0.09
VPS50-215ENST00000480943 ZSWIM6Q9HCJ5 1215 aa14.47□□□□□ -0.09
VPS50-215ENST00000480943 DPY19L2Q6NUT2 758 aa14.44□□□□□ -0.1
VPS50-215ENST00000480943 CHRM1P11229 460 aaPredicted RBP14.43□□□□□ -0.1
VPS50-215ENST00000480943 PDAP1Q13442 181 aaKnown RBP14.38□□□□□ -0.11
VPS50-215ENST00000480943 FKBP8Q14318 412 aa14.38□□□□□ -0.11
VPS50-215ENST00000480943 ANKRD13DQ6ZTN6 518 aa14.34□□□□□ -0.11
VPS50-215ENST00000480943 PLA2G2EQ9NZK7 142 aa14.33□□□□□ -0.12
VPS50-215ENST00000480943 CABP2Q9NPB3 220 aa14.31□□□□□ -0.12
VPS50-215ENST00000480943 GPR153Q6NV75 609 aa14.25□□□□□ -0.13
VPS50-215ENST00000480943 FBXO3Q9UK99 471 aa14.25□□□□□ -0.13
VPS50-215ENST00000480943 KLHL34Q8N239 644 aa14.24□□□□□ -0.13
VPS50-215ENST00000480943 HCSTQ9UBK5 93 aa14.23□□□□□ -0.13
VPS50-215ENST00000480943 LSM11P83369 360 aaKnown RBP eCLIP14.22□□□□□ -0.13
VPS50-215ENST00000480943 ZNF316A6NFI3 1004 aaPredicted RBP14.14□□□□□ -0.15
VPS50-215ENST00000480943 PBX2P40425 430 aa14.13□□□□□ -0.15
VPS50-215ENST00000480943 ARSIQ5FYB1 569 aa14.1□□□□□ -0.15
VPS50-215ENST00000480943 MICALL2Q8IY33 904 aa14.09□□□□□ -0.15
VPS50-215ENST00000480943 TMEM92Q6UXU6 159 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms