RNA–Protein interactions for RNA: ENST00000479958.6

COMMD3-212, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 1,443 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-212ENST00000479958 FAM212AQ96EL1 285 aa15.86■□□□□ 0.13
COMMD3-212ENST00000479958 DCAF8Q5TAQ9 597 aa15.83■□□□□ 0.12
COMMD3-212ENST00000479958 GABBR2O75899 941 aa15.79■□□□□ 0.12
COMMD3-212ENST00000479958 GSE1Q14687 1217 aa15.77■□□□□ 0.12
COMMD3-212ENST00000479958 CCDC61Q9Y6R9 512 aa15.77■□□□□ 0.11
COMMD3-212ENST00000479958 PHF12Q96QT6 1004 aa15.75■□□□□ 0.11
COMMD3-212ENST00000479958 CIZ1Q9ULV3 898 aaPredicted RBP15.68■□□□□ 0.1
COMMD3-212ENST00000479958 KIF12Q96FN5 646 aa15.66■□□□□ 0.1
COMMD3-212ENST00000479958 SGIP1Q9BQI5 828 aa15.6■□□□□ 0.09
COMMD3-212ENST00000479958 MAP3K13O43283 966 aa15.6■□□□□ 0.09
COMMD3-212ENST00000479958 GALR2O43603 387 aaPredicted RBP15.6■□□□□ 0.09
COMMD3-212ENST00000479958 DCBLD2Q96PD2 775 aa15.59■□□□□ 0.09
COMMD3-212ENST00000479958 PYGBP11216 843 aa15.58■□□□□ 0.08
COMMD3-212ENST00000479958 MS4A3Q96HJ5 214 aa15.56■□□□□ 0.08
COMMD3-212ENST00000479958 PCDHB13Q9Y5F0 798 aa15.56■□□□□ 0.08
COMMD3-212ENST00000479958 CHRM1P11229 460 aaPredicted RBP15.54■□□□□ 0.08
COMMD3-212ENST00000479958 TRIM41Q8WV44 630 aa15.54■□□□□ 0.08
COMMD3-212ENST00000479958 ZNF467Q7Z7K2 595 aaPredicted RBP15.43■□□□□ 0.06
COMMD3-212ENST00000479958 IFNL1Q8IU54 200 aa15.43■□□□□ 0.06
COMMD3-212ENST00000479958 TIE1P35590 1138 aa15.39■□□□□ 0.05
COMMD3-212ENST00000479958 POTEIP0CG38 1075 aa15.38■□□□□ 0.05
COMMD3-212ENST00000479958 PCDHB8Q9UN66 801 aa15.37■□□□□ 0.05
COMMD3-212ENST00000479958 ASTLQ6HA08 431 aaPredicted RBP15.34■□□□□ 0.05
COMMD3-212ENST00000479958 ATMINO43313 823 aaPredicted RBP15.34■□□□□ 0.05
COMMD3-212ENST00000479958 TRPC6Q9Y210 931 aa15.33■□□□□ 0.04
COMMD3-212ENST00000479958 ECM2O94769 699 aaPredicted RBP15.31■□□□□ 0.04
COMMD3-212ENST00000479958 BMP2KQ9NSY1 1161 aaPredicted RBP15.31■□□□□ 0.04
COMMD3-212ENST00000479958 TMEM106CQ9BVX2 250 aa15.29■□□□□ 0.04
COMMD3-212ENST00000479958 TTLL13PA6NNM8 815 aa15.27■□□□□ 0.04
COMMD3-212ENST00000479958 PKD2Q13563 968 aa15.27■□□□□ 0.04
COMMD3-212ENST00000479958 ATN1P54259 1190 aaPredicted RBP15.26■□□□□ 0.03
COMMD3-212ENST00000479958 PDAP1Q13442 181 aaKnown RBP15.26■□□□□ 0.03
COMMD3-212ENST00000479958 PSEN1P49768 467 aa15.25■□□□□ 0.03
COMMD3-212ENST00000479958 TAOK2Q9UL54 1235 aa15.25■□□□□ 0.03
COMMD3-212ENST00000479958 SLC39A7Q92504 469 aa15.24■□□□□ 0.03
COMMD3-212ENST00000479958 RIOK3O14730 519 aaKnown RBP15.23■□□□□ 0.03
COMMD3-212ENST00000479958 LHX8Q68G74 356 aa15.23■□□□□ 0.03
COMMD3-212ENST00000479958 PELP1Q8IZL8 1130 aaKnown RBP15.22■□□□□ 0.03
COMMD3-212ENST00000479958 C7P10643 843 aa15.21■□□□□ 0.03
COMMD3-212ENST00000479958 TRIM35Q9UPQ4 493 aa15.19■□□□□ 0.02
COMMD3-212ENST00000479958 VGFO15240 615 aaPredicted RBP15.17■□□□□ 0.02
COMMD3-212ENST00000479958 GOLGA2Q08379 1002 aa15.17■□□□□ 0.02
COMMD3-212ENST00000479958 RNF25Q96BH1 459 aaPredicted RBP15.14■□□□□ 0.01
COMMD3-212ENST00000479958 METRNQ9UJH8 293 aa15.14■□□□□ 0.01
COMMD3-212ENST00000479958 IER5LQ5T953 404 aa15.13■□□□□ 0.01
COMMD3-212ENST00000479958 RGL2O15211 777 aa15.09■□□□□ 0.01
COMMD3-212ENST00000479958 SEC24BO95487 1268 aa15.09■□□□□ 0.01
COMMD3-212ENST00000479958 MKRN3Q13064 507 aaKnown RBP15.09■□□□□ 0.01
COMMD3-212ENST00000479958 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.05■□□□□ -0
COMMD3-212ENST00000479958 ZFP91Q96JP5 570 aaPredicted RBP15.05■□□□□ -0
COMMD3-212ENST00000479958 AMER1Q5JTC6 1135 aaPredicted RBP15.04■□□□□ -0
COMMD3-212ENST00000479958 CABP2Q9NPB3 220 aa15.04■□□□□ -0
COMMD3-212ENST00000479958 PLCG2P16885 1265 aa15□□□□□ -0.01
COMMD3-212ENST00000479958 OCEL1Q9H607 264 aa14.99□□□□□ -0.01
COMMD3-212ENST00000479958 STK25O00506 426 aa14.97□□□□□ -0.01
COMMD3-212ENST00000479958 BCL11BQ9C0K0 894 aaPredicted RBP14.96□□□□□ -0.01
COMMD3-212ENST00000479958 STK24Q9Y6E0 443 aa14.96□□□□□ -0.01
COMMD3-212ENST00000479958 IRX5P78411 483 aaPredicted RBP14.95□□□□□ -0.02
COMMD3-212ENST00000479958 COLQQ9Y215 455 aaPredicted RBP14.95□□□□□ -0.02
COMMD3-212ENST00000479958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.94□□□□□ -0.02
COMMD3-212ENST00000479958 POTEFA5A3E0 1075 aa14.92□□□□□ -0.02
COMMD3-212ENST00000479958 EFCAB3Q8N7B9 438 aa14.92□□□□□ -0.02
COMMD3-212ENST00000479958 SOX12O15370 315 aa14.9□□□□□ -0.02
COMMD3-212ENST00000479958 MAMSTRQ6ZN01 415 aa14.9□□□□□ -0.02
COMMD3-212ENST00000479958 POTEB2H3BUK9 544 aa14.89□□□□□ -0.03
COMMD3-212ENST00000479958 DCAF8L2P0C7V8 631 aa14.88□□□□□ -0.03
COMMD3-212ENST00000479958 RTN4Q9NQC3 1192 aaKnown RBP14.86□□□□□ -0.03
COMMD3-212ENST00000479958 CHGAP10645 457 aaKnown RBP14.84□□□□□ -0.03
COMMD3-212ENST00000479958 L3MBTL3Q96JM7 780 aaPredicted RBP14.83□□□□□ -0.03
COMMD3-212ENST00000479958 HS6ST3Q8IZP7 471 aa14.82□□□□□ -0.04
COMMD3-212ENST00000479958 SCUBE2Q9NQ36 999 aa14.82□□□□□ -0.04
COMMD3-212ENST00000479958 ILDR1Q86SU0 546 aaPredicted RBP14.81□□□□□ -0.04
COMMD3-212ENST00000479958 PDCD7Q8N8D1 485 aaKnown RBP14.8□□□□□ -0.04
COMMD3-212ENST00000479958 NLRP6P59044 892 aa14.79□□□□□ -0.04
COMMD3-212ENST00000479958 G3V3G9 751 aa14.78□□□□□ -0.04
COMMD3-212ENST00000479958 POTEJP0CG39 1038 aa14.75□□□□□ -0.05
COMMD3-212ENST00000479958 PHF8Q9UPP1 1060 aa14.75□□□□□ -0.05
COMMD3-212ENST00000479958 OTUD5Q96G74 571 aa14.75□□□□□ -0.05
COMMD3-212ENST00000479958 DPY19L2Q6NUT2 758 aa14.72□□□□□ -0.05
COMMD3-212ENST00000479958 MFRPQ9BY79 579 aa14.68□□□□□ -0.06
COMMD3-212ENST00000479958 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.68□□□□□ -0.06
COMMD3-212ENST00000479958 BOLA1Q9Y3E2 137 aa14.68□□□□□ -0.06
COMMD3-212ENST00000479958 C3orf67Q6ZVT6 689 aa14.66□□□□□ -0.06
COMMD3-212ENST00000479958 DNAJC5Q9H3Z4 198 aa14.66□□□□□ -0.06
COMMD3-212ENST00000479958 FBXO22Q8NEZ5 403 aa14.66□□□□□ -0.06
COMMD3-212ENST00000479958 RYDENQ9NUL5 291 aaKnown RBP14.65□□□□□ -0.06
COMMD3-212ENST00000479958 MS4A4AQ96JQ5 239 aa14.64□□□□□ -0.07
COMMD3-212ENST00000479958 SLAIN1Q8ND83 568 aa14.6□□□□□ -0.07
COMMD3-212ENST00000479958 TMEM121BQ9BXQ6 578 aaPredicted RBP14.57□□□□□ -0.08
COMMD3-212ENST00000479958 NKX1-1Q15270 411 aaPredicted RBP14.54□□□□□ -0.08
COMMD3-212ENST00000479958 MICALL2Q8IY33 904 aa14.54□□□□□ -0.08
COMMD3-212ENST00000479958 BBXQ8WY36 941 aaPredicted RBP14.51□□□□□ -0.09
COMMD3-212ENST00000479958 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.47□□□□□ -0.09
COMMD3-212ENST00000479958 SNPHO15079 494 aa14.46□□□□□ -0.09
COMMD3-212ENST00000479958 PPP1R37O75864 691 aa14.45□□□□□ -0.1
COMMD3-212ENST00000479958 GTPBP6O43824 516 aaPredicted RBP14.43□□□□□ -0.1
COMMD3-212ENST00000479958 PLSCR2Q9NRY7 297 aa14.39□□□□□ -0.11
COMMD3-212ENST00000479958 FAM163AQ96GL9 167 aaPredicted RBP14.38□□□□□ -0.11
COMMD3-212ENST00000479958 SPRYD3Q8NCJ5 442 aa14.35□□□□□ -0.11
COMMD3-212ENST00000479958 POTEMA6NI47 508 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms