RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 ERICH6BQ5W0A0 696 aa11.7□□□□□ -0.54
SYNE1-224ENST00000478916 BECN1Q14457 450 aa11.7□□□□□ -0.54
SYNE1-224ENST00000478916 NCLP19338 710 aaKnown RBP11.69□□□□□ -0.54
SYNE1-224ENST00000478916 KCNH8Q96L42 1107 aa11.69□□□□□ -0.54
SYNE1-224ENST00000478916 CLIP1P30622 1438 aa11.67□□□□□ -0.54
SYNE1-224ENST00000478916 GOLGA6L22H0YM25 854 aa11.67□□□□□ -0.54
SYNE1-224ENST00000478916 WDR43Q15061 677 aaKnown RBP eCLIP11.67□□□□□ -0.54
SYNE1-224ENST00000478916 FAM9BQ8IZU0 186 aa11.67□□□□□ -0.54
SYNE1-224ENST00000478916 NAP1L5Q96NT1 182 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-224ENST00000478916 ARID4BQ4LE39 1312 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-224ENST00000478916 C14orf37Q86TY3 774 aa11.66□□□□□ -0.54
SYNE1-224ENST00000478916 DNTTIP2Q5QJE6 756 aaKnown RBP11.66□□□□□ -0.54
SYNE1-224ENST00000478916 KDM2AQ9Y2K7 1162 aa11.65□□□□□ -0.54
SYNE1-224ENST00000478916 EEA1Q15075 1411 aa11.65□□□□□ -0.54
SYNE1-224ENST00000478916 PTMAP06454 111 aaKnown RBP11.65□□□□□ -0.55
SYNE1-224ENST00000478916 TMC1Q8TDI8 760 aa11.63□□□□□ -0.55
SYNE1-224ENST00000478916 A0A0G2JS52 829 aa11.63□□□□□ -0.55
SYNE1-224ENST00000478916 GOLGA3Q08378 1498 aa11.62□□□□□ -0.55
SYNE1-224ENST00000478916 KIF27Q86VH2 1401 aa11.61□□□□□ -0.55
SYNE1-224ENST00000478916 DCAF1Q9Y4B6 1507 aa11.61□□□□□ -0.55
SYNE1-224ENST00000478916 WRNQ14191 1432 aaPredicted RBP eCLIP11.6□□□□□ -0.55
SYNE1-224ENST00000478916 ZBTB7CA1YPR0 619 aa11.6□□□□□ -0.55
SYNE1-224ENST00000478916 SALL2Q9Y467 1007 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-224ENST00000478916 MYH16Q9H6N6 1097 aa11.59□□□□□ -0.55
SYNE1-224ENST00000478916 PPM1GO15355 546 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-224ENST00000478916 HAP1P54257 671 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-224ENST00000478916 DDX10Q13206 875 aaKnown RBP11.58□□□□□ -0.56
SYNE1-224ENST00000478916 RRP7BPQ9NSQ0 103 aa11.57□□□□□ -0.56
SYNE1-224ENST00000478916 CFDP1Q9UEE9 299 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-224ENST00000478916 ZRSR1Q15695 479 aaKnown RBP11.56□□□□□ -0.56
SYNE1-224ENST00000478916 RTN4Q9NQC3 1192 aaKnown RBP11.56□□□□□ -0.56
SYNE1-224ENST00000478916 CDCA8Q53HL2 280 aa11.54□□□□□ -0.56
SYNE1-224ENST00000478916 EIF4G2P78344 907 aaKnown RBP eCLIP11.53□□□□□ -0.56
SYNE1-224ENST00000478916 IRX6P78412 446 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-224ENST00000478916 MRS2Q9HD23 443 aa11.53□□□□□ -0.56
SYNE1-224ENST00000478916 BAZ1AQ9NRL2 1556 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-224ENST00000478916 PLEKHG5O94827 1062 aa11.52□□□□□ -0.57
SYNE1-224ENST00000478916 SENP3Q9H4L4 574 aaPredicted RBP11.51□□□□□ -0.57
SYNE1-224ENST00000478916 CEP164Q9UPV0 1460 aa11.51□□□□□ -0.57
SYNE1-224ENST00000478916 CFAP53Q96M91 514 aa11.51□□□□□ -0.57
SYNE1-224ENST00000478916 CEP162Q5TB80 1403 aa11.49□□□□□ -0.57
SYNE1-224ENST00000478916 GOLGA6L6A8MZA4 724 aa11.49□□□□□ -0.57
SYNE1-224ENST00000478916 RGL3Q3MIN7 710 aa11.48□□□□□ -0.57
SYNE1-224ENST00000478916 CHAF1AQ13111 956 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-224ENST00000478916 AMER1Q5JTC6 1135 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-224ENST00000478916 TRHP20396 242 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-224ENST00000478916 CASC1Q6TDU7 716 aa11.46□□□□□ -0.57
SYNE1-224ENST00000478916 NOP58Q9Y2X3 529 aaKnown RBP11.46□□□□□ -0.58
SYNE1-224ENST00000478916 EIF4G1Q04637 1599 aaKnown RBP11.45□□□□□ -0.58
SYNE1-224ENST00000478916 KANK1Q14678 1352 aa11.45□□□□□ -0.58
SYNE1-224ENST00000478916 KNSTRNQ9Y448 316 aa11.45□□□□□ -0.58
SYNE1-224ENST00000478916 CCNB3Q8WWL7 1395 aa11.45□□□□□ -0.58
SYNE1-224ENST00000478916 NRDCO43847 1150 aa11.44□□□□□ -0.58
SYNE1-224ENST00000478916 POGKQ9P215 609 aa11.44□□□□□ -0.58
SYNE1-224ENST00000478916 HDGFP51858 240 aaKnown RBP11.44□□□□□ -0.58
SYNE1-224ENST00000478916 FHAD1B1AJZ9 1412 aa11.43□□□□□ -0.58
SYNE1-224ENST00000478916 MIER1Q8N108 512 aa11.43□□□□□ -0.58
SYNE1-224ENST00000478916 LAS1LQ9Y4W2 734 aaKnown RBP11.43□□□□□ -0.58
SYNE1-224ENST00000478916 MSNP26038 577 aaKnown RBP11.43□□□□□ -0.58
SYNE1-224ENST00000478916 L1TD1Q5T7N2 865 aaKnown RBP11.42□□□□□ -0.58
SYNE1-224ENST00000478916 PLCB2Q00722 1185 aa11.42□□□□□ -0.58
SYNE1-224ENST00000478916 TNIKQ9UKE5 1360 aa11.42□□□□□ -0.58
SYNE1-224ENST00000478916 CARD11Q9BXL7 1154 aa11.41□□□□□ -0.58
SYNE1-224ENST00000478916 LMOD2Q6P5Q4 547 aa11.4□□□□□ -0.58
SYNE1-224ENST00000478916 TPRNQ4KMQ1 711 aa11.4□□□□□ -0.59
SYNE1-224ENST00000478916 PDS5BQ9NTI5 1447 aa11.39□□□□□ -0.59
SYNE1-224ENST00000478916 CUX2O14529 1486 aa11.39□□□□□ -0.59
SYNE1-224ENST00000478916 NUDCQ9Y266 331 aa11.39□□□□□ -0.59
SYNE1-224ENST00000478916 DEKP35659 375 aaKnown RBP11.39□□□□□ -0.59
SYNE1-224ENST00000478916 MAPK8IP3Q9UPT6 1336 aa11.39□□□□□ -0.59
SYNE1-224ENST00000478916 CARMIL2Q6F5E8 1435 aa11.37□□□□□ -0.59
SYNE1-224ENST00000478916 CARMIL1Q5VZK9 1371 aa11.37□□□□□ -0.59
SYNE1-224ENST00000478916 SMARCA2P51531 1590 aa11.36□□□□□ -0.59
SYNE1-224ENST00000478916 HSP90AB1P08238 724 aaKnown RBP11.36□□□□□ -0.59
SYNE1-224ENST00000478916 HIRIP3Q9BW71 556 aaPredicted RBP11.36□□□□□ -0.59
SYNE1-224ENST00000478916 NPHP1O15259 732 aa11.35□□□□□ -0.59
SYNE1-224ENST00000478916 TNNT3P45378 269 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-224ENST00000478916 MLECQ14165 292 aa11.34□□□□□ -0.59
SYNE1-224ENST00000478916 PPP4R2Q9NY27 417 aa11.33□□□□□ -0.59
SYNE1-224ENST00000478916 PNNQ9H307 717 aaKnown RBP11.33□□□□□ -0.6
SYNE1-224ENST00000478916 SUPT16HQ9Y5B9 1047 aaKnown RBP11.33□□□□□ -0.6
SYNE1-224ENST00000478916 FTSJ3Q8IY81 847 aaKnown RBP11.33□□□□□ -0.6
SYNE1-224ENST00000478916 TULP1O00294 542 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-224ENST00000478916 CHMP4BQ9H444 224 aaKnown RBP11.3□□□□□ -0.6
SYNE1-224ENST00000478916 DRC7Q8IY82 874 aa11.3□□□□□ -0.6
SYNE1-224ENST00000478916 CECR2Q9BXF3 1484 aa11.29□□□□□ -0.6
SYNE1-224ENST00000478916 TMF1P82094 1093 aa11.28□□□□□ -0.6
SYNE1-224ENST00000478916 HSCBQ8IWL3 235 aa11.28□□□□□ -0.6
SYNE1-224ENST00000478916 GOLGA6L4A6NEF3 574 aa11.28□□□□□ -0.6
SYNE1-224ENST00000478916 ARHGAP35Q9NRY4 1499 aa11.26□□□□□ -0.61
SYNE1-224ENST00000478916 SOGA1O94964 1423 aa11.26□□□□□ -0.61
SYNE1-224ENST00000478916 SRPK2P78362 688 aaKnown RBP11.26□□□□□ -0.61
SYNE1-224ENST00000478916 PTMSP20962 102 aa11.26□□□□□ -0.61
SYNE1-224ENST00000478916 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-224ENST00000478916 NEUROD2Q15784 382 aa11.25□□□□□ -0.61
SYNE1-224ENST00000478916 RGS3P49796 1198 aa11.25□□□□□ -0.61
SYNE1-224ENST00000478916 GGT6Q6P531 493 aa11.25□□□□□ -0.61
SYNE1-224ENST00000478916 DCAF11Q8TEB1 546 aa11.25□□□□□ -0.61
SYNE1-224ENST00000478916 MS4A1P11836 297 aa11.25□□□□□ -0.61
SYNE1-224ENST00000478916 U2SURPO15042 1029 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms