RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 TSPYL2Q9H2G4 693 aaPredicted RBP11.2□□□□□ -0.62
PTCD3-212ENST00000477520 POTEJP0CG39 1038 aa11.19□□□□□ -0.62
PTCD3-212ENST00000477520 METRNQ9UJH8 293 aa11.19□□□□□ -0.62
PTCD3-212ENST00000477520 CCDC61Q9Y6R9 512 aa11.16□□□□□ -0.62
PTCD3-212ENST00000477520 SLC39A7Q92504 469 aa11.14□□□□□ -0.63
PTCD3-212ENST00000477520 POTEMA6NI47 508 aa11.13□□□□□ -0.63
PTCD3-212ENST00000477520 C7P10643 843 aa11.13□□□□□ -0.63
PTCD3-212ENST00000477520 ATN1P54259 1190 aaPredicted RBP11.12□□□□□ -0.63
PTCD3-212ENST00000477520 KIF12Q96FN5 646 aa11.11□□□□□ -0.63
PTCD3-212ENST00000477520 TRPC6Q9Y210 931 aa11.1□□□□□ -0.63
PTCD3-212ENST00000477520 POTEGQ6S5H5 508 aa11.09□□□□□ -0.63
PTCD3-212ENST00000477520 BMP2KQ9NSY1 1161 aaPredicted RBP11.06□□□□□ -0.64
PTCD3-212ENST00000477520 POTEFA5A3E0 1075 aa11.05□□□□□ -0.64
PTCD3-212ENST00000477520 RASEFQ8IZ41 740 aa11.05□□□□□ -0.64
PTCD3-212ENST00000477520 MAP3K13O43283 966 aa11.04□□□□□ -0.64
PTCD3-212ENST00000477520 MIER1Q8N108 512 aa11.03□□□□□ -0.64
PTCD3-212ENST00000477520 LCE2DQ5TA82 110 aaPredicted RBP11.02□□□□□ -0.65
PTCD3-212ENST00000477520 MAMSTRQ6ZN01 415 aa11□□□□□ -0.65
PTCD3-212ENST00000477520 TIE1P35590 1138 aa10.97□□□□□ -0.65
PTCD3-212ENST00000477520 PLEKHG5O94827 1062 aa10.95□□□□□ -0.66
PTCD3-212ENST00000477520 SCUBE2Q9NQ36 999 aa10.95□□□□□ -0.66
PTCD3-212ENST00000477520 TTLL13PA6NNM8 815 aa10.94□□□□□ -0.66
PTCD3-212ENST00000477520 COLQQ9Y215 455 aaPredicted RBP10.94□□□□□ -0.66
PTCD3-212ENST00000477520 FAM163AQ96GL9 167 aaPredicted RBP10.93□□□□□ -0.66
PTCD3-212ENST00000477520 PLCD3Q8N3E9 789 aa10.89□□□□□ -0.67
PTCD3-212ENST00000477520 NUBP1P53384 320 aa10.88□□□□□ -0.67
PTCD3-212ENST00000477520 PCDH10Q9P2E7 1040 aa10.88□□□□□ -0.67
PTCD3-212ENST00000477520 TRIM35Q9UPQ4 493 aa10.86□□□□□ -0.67
PTCD3-212ENST00000477520 PCDHB13Q9Y5F0 798 aa10.86□□□□□ -0.67
PTCD3-212ENST00000477520 SEC24BO95487 1268 aa10.85□□□□□ -0.67
PTCD3-212ENST00000477520 SGIP1Q9BQI5 828 aa10.84□□□□□ -0.67
PTCD3-212ENST00000477520 IFNL1Q8IU54 200 aa10.83□□□□□ -0.68
PTCD3-212ENST00000477520 IER5LQ5T953 404 aa10.81□□□□□ -0.68
PTCD3-212ENST00000477520 ZBTB47Q9UFB7 747 aaPredicted RBP10.77□□□□□ -0.69
PTCD3-212ENST00000477520 TMEM106CQ9BVX2 250 aa10.76□□□□□ -0.69
PTCD3-212ENST00000477520 FAM212AQ96EL1 285 aa10.75□□□□□ -0.69
PTCD3-212ENST00000477520 FKBP8Q14318 412 aa10.73□□□□□ -0.69
PTCD3-212ENST00000477520 SLAIN1Q8ND83 568 aa10.71□□□□□ -0.69
PTCD3-212ENST00000477520 IRX5P78411 483 aaPredicted RBP10.69□□□□□ -0.7
PTCD3-212ENST00000477520 CDAN1Q8IWY9 1227 aa10.68□□□□□ -0.7
PTCD3-212ENST00000477520 ST18O60284 1047 aa10.67□□□□□ -0.7
PTCD3-212ENST00000477520 PYGBP11216 843 aa10.67□□□□□ -0.7
PTCD3-212ENST00000477520 PLCG2P16885 1265 aa10.67□□□□□ -0.7
PTCD3-212ENST00000477520 DCAF8Q5TAQ9 597 aa10.65□□□□□ -0.7
PTCD3-212ENST00000477520 PCDHB8Q9UN66 801 aa10.63□□□□□ -0.71
PTCD3-212ENST00000477520 OCEL1Q9H607 264 aa10.61□□□□□ -0.71
PTCD3-212ENST00000477520 PDCD7Q8N8D1 485 aaKnown RBP10.51□□□□□ -0.73
PTCD3-212ENST00000477520 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.51□□□□□ -0.73
PTCD3-212ENST00000477520 FBXO3Q9UK99 471 aa10.5□□□□□ -0.73
PTCD3-212ENST00000477520 MARVELD3Q96A59 401 aa10.48□□□□□ -0.73
PTCD3-212ENST00000477520 TMEM121BQ9BXQ6 578 aaPredicted RBP10.48□□□□□ -0.73
PTCD3-212ENST00000477520 SNPHO15079 494 aa10.45□□□□□ -0.74
PTCD3-212ENST00000477520 VASPP50552 380 aaPredicted RBP10.45□□□□□ -0.74
PTCD3-212ENST00000477520 ZNF467Q7Z7K2 595 aaPredicted RBP10.45□□□□□ -0.74
PTCD3-212ENST00000477520 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
PTCD3-212ENST00000477520 GSE1Q14687 1217 aa10.44□□□□□ -0.74
PTCD3-212ENST00000477520 SPNS2Q8IVW8 549 aa10.44□□□□□ -0.74
PTCD3-212ENST00000477520 MMRN1Q13201 1228 aa10.43□□□□□ -0.74
PTCD3-212ENST00000477520 CHRM1P11229 460 aaPredicted RBP10.41□□□□□ -0.74
PTCD3-212ENST00000477520 PSEN1P49768 467 aa10.41□□□□□ -0.74
PTCD3-212ENST00000477520 MKRN3Q13064 507 aaKnown RBP10.41□□□□□ -0.74
PTCD3-212ENST00000477520 GOLGA2Q08379 1002 aa10.4□□□□□ -0.74
PTCD3-212ENST00000477520 C3orf67Q6ZVT6 689 aa10.4□□□□□ -0.74
PTCD3-212ENST00000477520 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.39□□□□□ -0.759e-7■■□□□ 13.4
PTCD3-212ENST00000477520 L3MBTL3Q96JM7 780 aaPredicted RBP10.38□□□□□ -0.75
PTCD3-212ENST00000477520 POTEB3A0JP26 581 aa10.37□□□□□ -0.75
PTCD3-212ENST00000477520 POTEBQ6S5H4 581 aa10.37□□□□□ -0.75
PTCD3-212ENST00000477520 DPY19L2Q6NUT2 758 aa10.36□□□□□ -0.75
PTCD3-212ENST00000477520 ILDR1Q86SU0 546 aaPredicted RBP10.36□□□□□ -0.75
PTCD3-212ENST00000477520 EMP3P54852 163 aa10.34□□□□□ -0.75
PTCD3-212ENST00000477520 PDAP1Q13442 181 aaKnown RBP10.31□□□□□ -0.76
PTCD3-212ENST00000477520 KRTAP3-3Q9BYR6 98 aa10.31□□□□□ -0.76
PTCD3-212ENST00000477520 KRTAP3-2Q9BYR7 98 aa10.31□□□□□ -0.76
PTCD3-212ENST00000477520 HS3ST6Q96QI5 342 aa10.3□□□□□ -0.76
PTCD3-212ENST00000477520 FAM205CA6NFA0 338 aa10.29□□□□□ -0.76
PTCD3-212ENST00000477520 CABP2Q9NPB3 220 aa10.29□□□□□ -0.76
PTCD3-212ENST00000477520 IFNLR1Q8IU57 520 aaPredicted RBP10.28□□□□□ -0.76
PTCD3-212ENST00000477520 CIZ1Q9ULV3 898 aaPredicted RBP10.26□□□□□ -0.77
PTCD3-212ENST00000477520 HOXB3P14651 431 aaPredicted RBP10.25□□□□□ -0.77
PTCD3-212ENST00000477520 SPOCK2Q92563 424 aa10.25□□□□□ -0.77
PTCD3-212ENST00000477520 BOLA1Q9Y3E2 137 aa10.24□□□□□ -0.77
PTCD3-212ENST00000477520 G3V3G9 751 aa10.17□□□□□ -0.78
PTCD3-212ENST00000477520 HOXB1P14653 301 aaPredicted RBP10.15□□□□□ -0.78
PTCD3-212ENST00000477520 EFCAB3Q8N7B9 438 aa10.14□□□□□ -0.79
PTCD3-212ENST00000477520 ZNF710Q8N1W2 664 aa10.12□□□□□ -0.79
PTCD3-212ENST00000477520 TMEM92Q6UXU6 159 aa10.11□□□□□ -0.79
PTCD3-212ENST00000477520 DOK7Q18PE1 504 aa10.1□□□□□ -0.79
PTCD3-212ENST00000477520 ERBB3P21860 1342 aa10.09□□□□□ -0.79
PTCD3-212ENST00000477520 MICALL2Q8IY33 904 aa10.07□□□□□ -0.8
PTCD3-212ENST00000477520 VARS2Q5ST30 1063 aaKnown RBP10.05□□□□□ -0.8
PTCD3-212ENST00000477520 MS4A4AQ96JQ5 239 aa10.04□□□□□ -0.8
PTCD3-212ENST00000477520 TRIM41Q8WV44 630 aa10.03□□□□□ -0.8
PTCD3-212ENST00000477520 RNF25Q96BH1 459 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-212ENST00000477520 RIMBP2O15034 1052 aa10.01□□□□□ -0.81
PTCD3-212ENST00000477520 GPR153Q6NV75 609 aa10□□□□□ -0.81
PTCD3-212ENST00000477520 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.99□□□□□ -0.81
PTCD3-212ENST00000477520 ZFP91Q96JP5 570 aaPredicted RBP9.99□□□□□ -0.81
PTCD3-212ENST00000477520 PHF8Q9UPP1 1060 aa9.99□□□□□ -0.81
PTCD3-212ENST00000477520 RIOK3O14730 519 aaKnown RBP9.98□□□□□ -0.81
PTCD3-212ENST00000477520 RNF166Q96A37 237 aaPredicted RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms