RNA–Protein interactions for RNA: ENST00000476590.1

CD55-208, Transcript of CD55 molecule (Cromer blood group), humanhuman

TSL 1 (best)

Gene CD55, Length 2,163 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD55-208ENST00000476590 KRTAP3-2Q9BYR7 98 aa7.68□□□□□ -1.18
CD55-208ENST00000476590 SNPHO15079 494 aa7.67□□□□□ -1.18
CD55-208ENST00000476590 PHF12Q96QT6 1004 aa7.66□□□□□ -1.18
CD55-208ENST00000476590 SSUH2Q9Y2M2 353 aa7.64□□□□□ -1.19
CD55-208ENST00000476590 MARVELD3Q96A59 401 aa7.61□□□□□ -1.19
CD55-208ENST00000476590 ZNF692Q9BU19 519 aaPredicted RBP7.61□□□□□ -1.19
CD55-208ENST00000476590 POTEFA5A3E0 1075 aa7.6□□□□□ -1.19
CD55-208ENST00000476590 FBLN2P98095 1184 aa7.56□□□□□ -1.2
CD55-208ENST00000476590 ATN1P54259 1190 aaPredicted RBP7.55□□□□□ -1.2
CD55-208ENST00000476590 EMP3P54852 163 aa7.54□□□□□ -1.2
CD55-208ENST00000476590 SEC24BO95487 1268 aa7.53□□□□□ -1.2
CD55-208ENST00000476590 MYT1Q01538 1121 aa7.53□□□□□ -1.2
CD55-208ENST00000476590 MS4A3Q96HJ5 214 aa7.53□□□□□ -1.2
CD55-208ENST00000476590 MYT1LQ9UL68 1186 aa7.52□□□□□ -1.21
CD55-208ENST00000476590 EHMT2Q96KQ7 1210 aa7.51□□□□□ -1.21
CD55-208ENST00000476590 HS3ST6Q96QI5 342 aa7.5□□□□□ -1.21
CD55-208ENST00000476590 FAM205CA6NFA0 338 aa7.42□□□□□ -1.22
CD55-208ENST00000476590 PABPN1Q86U42 306 aaKnown RBP eCLIP7.4□□□□□ -1.22
CD55-208ENST00000476590 PLA2G2EQ9NZK7 142 aa7.4□□□□□ -1.22
CD55-208ENST00000476590 COLQQ9Y215 455 aaPredicted RBP7.4□□□□□ -1.23
CD55-208ENST00000476590 IRX2Q9BZI1 471 aaPredicted RBP7.39□□□□□ -1.23
CD55-208ENST00000476590 POTEB3A0JP26 581 aa7.39□□□□□ -1.23
CD55-208ENST00000476590 PTGER2P43116 358 aa7.39□□□□□ -1.23
CD55-208ENST00000476590 POTEBQ6S5H4 581 aa7.39□□□□□ -1.23
CD55-208ENST00000476590 LOC100996750A0A140TA64 210 aa7.36□□□□□ -1.23
CD55-208ENST00000476590 KRTAP4-6Q9BYQ5 205 aa7.36□□□□□ -1.23
CD55-208ENST00000476590 IER5LQ5T953 404 aa7.33□□□□□ -1.24
CD55-208ENST00000476590 BMP2KQ9NSY1 1161 aaPredicted RBP7.32□□□□□ -1.24
CD55-208ENST00000476590 RGS20O76081 388 aa7.29□□□□□ -1.24
CD55-208ENST00000476590 NPM1P06748 294 aaKnown RBP eCLIP7.29□□□□□ -1.24
CD55-208ENST00000476590 TIE1P35590 1138 aa7.29□□□□□ -1.24
CD55-208ENST00000476590 CREBZFQ9NS37 354 aa7.27□□□□□ -1.24
CD55-208ENST00000476590 TTBK1Q5TCY1 1321 aaPredicted RBP7.27□□□□□ -1.25
CD55-208ENST00000476590 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.23□□□□□ -1.25
CD55-208ENST00000476590 RTN4Q9NQC3 1192 aaKnown RBP7.2□□□□□ -1.26
CD55-208ENST00000476590 PLCG2P16885 1265 aa7.16□□□□□ -1.26
CD55-208ENST00000476590 TTLL13PA6NNM8 815 aa7.1□□□□□ -1.27
CD55-208ENST00000476590 HCSTQ9UBK5 93 aa7.1□□□□□ -1.27
CD55-208ENST00000476590 Q6ZNB5 142 aa7.09□□□□□ -1.27
CD55-208ENST00000476590 TRIM35Q9UPQ4 493 aa7.07□□□□□ -1.28
CD55-208ENST00000476590 ERBB3P21860 1342 aa7.07□□□□□ -1.28
CD55-208ENST00000476590 MKRN4PQ13434 485 aaPredicted RBP7.05□□□□□ -1.28
CD55-208ENST00000476590 KIF12Q96FN5 646 aa7.05□□□□□ -1.28
CD55-208ENST00000476590 TRPC6Q9Y210 931 aa7.05□□□□□ -1.28
CD55-208ENST00000476590 STAG3Q9UJ98 1225 aa7.05□□□□□ -1.28
CD55-208ENST00000476590 DAXXQ9UER7 740 aaPredicted RBP7.03□□□□□ -1.28
CD55-208ENST00000476590 KCNA4P22459 653 aa7.01□□□□□ -1.29
CD55-208ENST00000476590 CSRNP3Q8WYN3 585 aa6.99□□□□□ -1.29
CD55-208ENST00000476590 PRKCSHP14314 528 aaPredicted RBP6.99□□□□□ -1.29
CD55-208ENST00000476590 CCDC61Q9Y6R9 512 aa6.96□□□□□ -1.3
CD55-208ENST00000476590 HOXB1P14653 301 aaPredicted RBP6.94□□□□□ -1.3
CD55-208ENST00000476590 AMER1Q5JTC6 1135 aaPredicted RBP6.94□□□□□ -1.3
CD55-208ENST00000476590 ZNF687Q8N1G0 1237 aa6.94□□□□□ -1.3
CD55-208ENST00000476590 ERICH6Q7L0X2 663 aa6.93□□□□□ -1.3
CD55-208ENST00000476590 IRX5P78411 483 aaPredicted RBP6.93□□□□□ -1.3
CD55-208ENST00000476590 TSPYL2Q9H2G4 693 aaPredicted RBP6.93□□□□□ -1.3
CD55-208ENST00000476590 C3orf67Q6ZVT6 689 aa6.92□□□□□ -1.3
CD55-208ENST00000476590 OCEL1Q9H607 264 aa6.92□□□□□ -1.3
CD55-208ENST00000476590 ANKRD13DQ6ZTN6 518 aa6.9□□□□□ -1.3
CD55-208ENST00000476590 VARS2Q5ST30 1063 aaKnown RBP6.89□□□□□ -1.31
CD55-208ENST00000476590 MAP3K13O43283 966 aa6.89□□□□□ -1.31
CD55-208ENST00000476590 MNX1P50219 401 aaPredicted RBP6.88□□□□□ -1.31
CD55-208ENST00000476590 ZNF710Q8N1W2 664 aa6.87□□□□□ -1.31
CD55-208ENST00000476590 HRCP23327 699 aa6.86□□□□□ -1.31
CD55-208ENST00000476590 LAPTM4AQ15012 233 aa6.84□□□□□ -1.31
CD55-208ENST00000476590 TRAF7Q6Q0C0 670 aa6.84□□□□□ -1.31
CD55-208ENST00000476590 IFFO2Q5TF58 517 aa6.83□□□□□ -1.32
CD55-208ENST00000476590 SGIP1Q9BQI5 828 aa6.8□□□□□ -1.32
CD55-208ENST00000476590 ZNF775Q96BV0 537 aaPredicted RBP6.79□□□□□ -1.32
CD55-208ENST00000476590 L3MBTL3Q96JM7 780 aaPredicted RBP6.79□□□□□ -1.32
CD55-208ENST00000476590 ATXN8OSP0DMR3 200 aa6.78□□□□□ -1.32
CD55-208ENST00000476590 BCL11AQ9H165 835 aa6.78□□□□□ -1.32
CD55-208ENST00000476590 ZNF787Q6DD87 383 aa6.78□□□□□ -1.32
CD55-208ENST00000476590 A0A0G2JS52 829 aa6.76□□□□□ -1.33
CD55-208ENST00000476590 DOK7Q18PE1 504 aa6.76□□□□□ -1.33
CD55-208ENST00000476590 HOXB3P14651 431 aaPredicted RBP6.75□□□□□ -1.33
CD55-208ENST00000476590 LSM11P83369 360 aaKnown RBP eCLIP6.75□□□□□ -1.33
CD55-208ENST00000476590 RIMBP2O15034 1052 aa6.74□□□□□ -1.33
CD55-208ENST00000476590 FOXD4L1Q9NU39 408 aa6.74□□□□□ -1.33
CD55-208ENST00000476590 TMEM106CQ9BVX2 250 aa6.74□□□□□ -1.33
CD55-208ENST00000476590 SUZ12Q15022 739 aaKnown RBP6.72□□□□□ -1.33
CD55-208ENST00000476590 TIMELESSQ9UNS1 1208 aa6.72□□□□□ -1.33
CD55-208ENST00000476590 STK17AQ9UEE5 414 aa6.71□□□□□ -1.33
CD55-208ENST00000476590 FAM9AQ8IZU1 332 aaPredicted RBP6.67□□□□□ -1.34
CD55-208ENST00000476590 LCE2BO14633 110 aa6.66□□□□□ -1.34
CD55-208ENST00000476590 PCDHB13Q9Y5F0 798 aa6.65□□□□□ -1.34
CD55-208ENST00000476590 ARXQ96QS3 562 aa6.65□□□□□ -1.35
CD55-208ENST00000476590 TAOK2Q9UL54 1235 aa6.63□□□□□ -1.35
CD55-208ENST00000476590 TULP1O00294 542 aaPredicted RBP6.61□□□□□ -1.35
CD55-208ENST00000476590 SLC4A1APQ9BWU0 796 aaKnown RBP6.61□□□□□ -1.35
CD55-208ENST00000476590 ZSWIM6Q9HCJ5 1215 aa6.61□□□□□ -1.35
CD55-208ENST00000476590 CENPBP07199 599 aaPredicted RBP6.59□□□□□ -1.35
CD55-208ENST00000476590 PBX2P40425 430 aa6.58□□□□□ -1.36
CD55-208ENST00000476590 PPARGC1BQ86YN6 1023 aaKnown RBP6.57□□□□□ -1.36
CD55-208ENST00000476590 GFRA3O60609 400 aa6.54□□□□□ -1.36
CD55-208ENST00000476590 TPRNQ4KMQ1 711 aa6.54□□□□□ -1.36
CD55-208ENST00000476590 PDCD7Q8N8D1 485 aaKnown RBP6.51□□□□□ -1.37
CD55-208ENST00000476590 TREML4Q6UXN2 200 aa6.5□□□□□ -1.37
CD55-208ENST00000476590 IFNL1Q8IU54 200 aa6.5□□□□□ -1.37
CD55-208ENST00000476590 BCANQ96GW7 911 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms