RNA–Protein interactions for RNA: ENST00000476553.1

NUP58-209, Transcript of nucleoporin 58, humanhuman

TSL 4

Gene NUP58, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP58-209ENST00000476553 METRNQ9UJH8 293 aa18.47■□□□□ 0.55
NUP58-209ENST00000476553 TSPYL2Q9H2G4 693 aaPredicted RBP18.46■□□□□ 0.55
NUP58-209ENST00000476553 SLC39A7Q92504 469 aa18.43■□□□□ 0.54
NUP58-209ENST00000476553 C7P10643 843 aa18.4■□□□□ 0.54
NUP58-209ENST00000476553 KIF12Q96FN5 646 aa18.37■□□□□ 0.53
NUP58-209ENST00000476553 POTEJP0CG39 1038 aa18.34■□□□□ 0.53
NUP58-209ENST00000476553 ATN1P54259 1190 aaPredicted RBP18.32■□□□□ 0.52
NUP58-209ENST00000476553 PLSCR2Q9NRY7 297 aa18.29■□□□□ 0.52
NUP58-209ENST00000476553 PLEKHG5O94827 1062 aa18.28■□□□□ 0.52
NUP58-209ENST00000476553 RASEFQ8IZ41 740 aa18.28■□□□□ 0.52
NUP58-209ENST00000476553 MIER1Q8N108 512 aa18.26■□□□□ 0.51
NUP58-209ENST00000476553 BMP2KQ9NSY1 1161 aaPredicted RBP18.26■□□□□ 0.51
NUP58-209ENST00000476553 TRPC6Q9Y210 931 aa18.25■□□□□ 0.51
NUP58-209ENST00000476553 POTEMA6NI47 508 aa18.24■□□□□ 0.51
NUP58-209ENST00000476553 MAP3K13O43283 966 aa18.23■□□□□ 0.51
NUP58-209ENST00000476553 MAMSTRQ6ZN01 415 aa18.22■□□□□ 0.51
NUP58-209ENST00000476553 TIE1P35590 1138 aa18.2■□□□□ 0.5
NUP58-209ENST00000476553 POTEGQ6S5H5 508 aa18.19■□□□□ 0.5
NUP58-209ENST00000476553 POTEFA5A3E0 1075 aa18.17■□□□□ 0.5
NUP58-209ENST00000476553 PLCD3Q8N3E9 789 aa18.1■□□□□ 0.49
NUP58-209ENST00000476553 SCUBE2Q9NQ36 999 aa18.1■□□□□ 0.49
NUP58-209ENST00000476553 TTLL13PA6NNM8 815 aa18.08■□□□□ 0.48
NUP58-209ENST00000476553 LCE2DQ5TA82 110 aaPredicted RBP18.07■□□□□ 0.48
NUP58-209ENST00000476553 SGIP1Q9BQI5 828 aa18.06■□□□□ 0.48
NUP58-209ENST00000476553 NUBP1P53384 320 aa18.05■□□□□ 0.48
NUP58-209ENST00000476553 ZBTB47Q9UFB7 747 aaPredicted RBP18.03■□□□□ 0.48
NUP58-209ENST00000476553 COLQQ9Y215 455 aaPredicted RBP18■□□□□ 0.47
NUP58-209ENST00000476553 PCDHB13Q9Y5F0 798 aa17.99■□□□□ 0.47
NUP58-209ENST00000476553 PCDH10Q9P2E7 1040 aa17.97■□□□□ 0.47
NUP58-209ENST00000476553 IER5LQ5T953 404 aa17.95■□□□□ 0.46
NUP58-209ENST00000476553 TRIM35Q9UPQ4 493 aa17.95■□□□□ 0.46
NUP58-209ENST00000476553 SEC24BO95487 1268 aa17.91■□□□□ 0.46
NUP58-209ENST00000476553 IFNL1Q8IU54 200 aa17.9■□□□□ 0.46
NUP58-209ENST00000476553 FAM212AQ96EL1 285 aa17.89■□□□□ 0.45
NUP58-209ENST00000476553 FAM163AQ96GL9 167 aaPredicted RBP17.88■□□□□ 0.45
NUP58-209ENST00000476553 FKBP8Q14318 412 aa17.87■□□□□ 0.45
NUP58-209ENST00000476553 TMEM106CQ9BVX2 250 aa17.79■□□□□ 0.44
NUP58-209ENST00000476553 IRX5P78411 483 aaPredicted RBP17.7■□□□□ 0.42
NUP58-209ENST00000476553 PLCG2P16885 1265 aa17.68■□□□□ 0.42
NUP58-209ENST00000476553 SLAIN1Q8ND83 568 aa17.64■□□□□ 0.41
NUP58-209ENST00000476553 PYGBP11216 843 aa17.63■□□□□ 0.41
NUP58-209ENST00000476553 DCAF8Q5TAQ9 597 aa17.62■□□□□ 0.41
NUP58-209ENST00000476553 FBXO3Q9UK99 471 aa17.61■□□□□ 0.41
NUP58-209ENST00000476553 OCEL1Q9H607 264 aa17.56■□□□□ 0.4
NUP58-209ENST00000476553 PCDHB8Q9UN66 801 aa17.55■□□□□ 0.4
NUP58-209ENST00000476553 ST18O60284 1047 aa17.54■□□□□ 0.4
NUP58-209ENST00000476553 CDAN1Q8IWY9 1227 aa17.53■□□□□ 0.4
NUP58-209ENST00000476553 VASPP50552 380 aaPredicted RBP17.46■□□□□ 0.39
NUP58-209ENST00000476553 GSE1Q14687 1217 aa17.42■□□□□ 0.38
NUP58-209ENST00000476553 ZNF467Q7Z7K2 595 aaPredicted RBP17.42■□□□□ 0.38
NUP58-209ENST00000476553 PDCD7Q8N8D1 485 aaKnown RBP17.41■□□□□ 0.38
NUP58-209ENST00000476553 TMEM121BQ9BXQ6 578 aaPredicted RBP17.39■□□□□ 0.37
NUP58-209ENST00000476553 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.39■□□□□ 0.37
NUP58-209ENST00000476553 CHRM1P11229 460 aaPredicted RBP17.36■□□□□ 0.37
NUP58-209ENST00000476553 KLHL34Q8N239 644 aa17.36■□□□□ 0.37
NUP58-209ENST00000476553 SNPHO15079 494 aa17.33■□□□□ 0.36
NUP58-209ENST00000476553 MKRN3Q13064 507 aaKnown RBP17.27■□□□□ 0.36
NUP58-209ENST00000476553 GOLGA2Q08379 1002 aa17.26■□□□□ 0.35
NUP58-209ENST00000476553 PSEN1P49768 467 aa17.25■□□□□ 0.35
NUP58-209ENST00000476553 C3orf67Q6ZVT6 689 aa17.24■□□□□ 0.35
NUP58-209ENST00000476553 ILDR1Q86SU0 546 aaPredicted RBP17.23■□□□□ 0.35
NUP58-209ENST00000476553 L3MBTL3Q96JM7 780 aaPredicted RBP17.23■□□□□ 0.35
NUP58-209ENST00000476553 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.21■□□□□ 0.359e-8■■■□□ 16.2
NUP58-209ENST00000476553 MARVELD3Q96A59 401 aa17.2■□□□□ 0.34
NUP58-209ENST00000476553 PDAP1Q13442 181 aaKnown RBP17.17■□□□□ 0.34
NUP58-209ENST00000476553 SPNS2Q8IVW8 549 aa17.13■□□□□ 0.33
NUP58-209ENST00000476553 MMRN1Q13201 1228 aa17.11■□□□□ 0.33
NUP58-209ENST00000476553 IFNLR1Q8IU57 520 aaPredicted RBP17.1■□□□□ 0.33
NUP58-209ENST00000476553 SPOCK2Q92563 424 aa17.1■□□□□ 0.33
NUP58-209ENST00000476553 EMP3P54852 163 aa17.06■□□□□ 0.32
NUP58-209ENST00000476553 DPY19L2Q6NUT2 758 aa17.04■□□□□ 0.32
NUP58-209ENST00000476553 CABP2Q9NPB3 220 aa17.04■□□□□ 0.32
NUP58-209ENST00000476553 CIZ1Q9ULV3 898 aaPredicted RBP17.01■□□□□ 0.31
NUP58-209ENST00000476553 POTEB3A0JP26 581 aa16.98■□□□□ 0.31
NUP58-209ENST00000476553 POTEBQ6S5H4 581 aa16.98■□□□□ 0.31
NUP58-209ENST00000476553 BOLA1Q9Y3E2 137 aa16.98■□□□□ 0.31
NUP58-209ENST00000476553 HS3ST6Q96QI5 342 aa16.97■□□□□ 0.31
NUP58-209ENST00000476553 KRTAP3-3Q9BYR6 98 aa16.96■□□□□ 0.31
NUP58-209ENST00000476553 KRTAP3-2Q9BYR7 98 aa16.96■□□□□ 0.31
NUP58-209ENST00000476553 HOXB3P14651 431 aaPredicted RBP16.92■□□□□ 0.3
NUP58-209ENST00000476553 FAM205CA6NFA0 338 aa16.91■□□□□ 0.3
NUP58-209ENST00000476553 G3V3G9 751 aa16.89■□□□□ 0.29
NUP58-209ENST00000476553 TRIM41Q8WV44 630 aa16.85■□□□□ 0.29
NUP58-209ENST00000476553 EFCAB3Q8N7B9 438 aa16.81■□□□□ 0.28
NUP58-209ENST00000476553 HOXB1P14653 301 aaPredicted RBP16.8■□□□□ 0.28
NUP58-209ENST00000476553 DOK7Q18PE1 504 aa16.76■□□□□ 0.27
NUP58-209ENST00000476553 ZNF710Q8N1W2 664 aa16.74■□□□□ 0.27
NUP58-209ENST00000476553 MICALL2Q8IY33 904 aa16.7■□□□□ 0.26
NUP58-209ENST00000476553 TMEM92Q6UXU6 159 aa16.68■□□□□ 0.26
NUP58-209ENST00000476553 RNF25Q96BH1 459 aaPredicted RBP16.68■□□□□ 0.26
NUP58-209ENST00000476553 ERBB3P21860 1342 aa16.65■□□□□ 0.26
NUP58-209ENST00000476553 RIOK3O14730 519 aaKnown RBP16.64■□□□□ 0.25
NUP58-209ENST00000476553 RIMBP2O15034 1052 aa16.64■□□□□ 0.25
NUP58-209ENST00000476553 MS4A4AQ96JQ5 239 aa16.64■□□□□ 0.25
NUP58-209ENST00000476553 SOX12O15370 315 aa16.63■□□□□ 0.25
NUP58-209ENST00000476553 ZSWIM6Q9HCJ5 1215 aa16.61■□□□□ 0.25
NUP58-209ENST00000476553 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.59■□□□□ 0.25
NUP58-209ENST00000476553 ZFP91Q96JP5 570 aaPredicted RBP16.59■□□□□ 0.25
NUP58-209ENST00000476553 VGFO15240 615 aaPredicted RBP16.57■□□□□ 0.24
NUP58-209ENST00000476553 VARS2Q5ST30 1063 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms