RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-222ENST00000474742 MS4A3Q96HJ5 214 aa3.72□□□□□ -1.81
HDAC9-222ENST00000474742 C7P10643 843 aa3.71□□□□□ -1.82
HDAC9-222ENST00000474742 SCUBE2Q9NQ36 999 aa3.71□□□□□ -1.82
HDAC9-222ENST00000474742 POTEB2H3BUK9 544 aa3.7□□□□□ -1.82
HDAC9-222ENST00000474742 PELP1Q8IZL8 1130 aaKnown RBP3.7□□□□□ -1.82
HDAC9-222ENST00000474742 MIER1Q8N108 512 aa3.7□□□□□ -1.82
HDAC9-222ENST00000474742 FAM163AQ96GL9 167 aaPredicted RBP3.7□□□□□ -1.82
HDAC9-222ENST00000474742 ATMINO43313 823 aaPredicted RBP3.69□□□□□ -1.82
HDAC9-222ENST00000474742 ASTLQ6HA08 431 aaPredicted RBP3.69□□□□□ -1.82
HDAC9-222ENST00000474742 SEC24BO95487 1268 aa3.68□□□□□ -1.82
HDAC9-222ENST00000474742 MNX1P50219 401 aaPredicted RBP3.68□□□□□ -1.82
HDAC9-222ENST00000474742 PLCD3Q8N3E9 789 aa3.67□□□□□ -1.82
HDAC9-222ENST00000474742 PCDH10Q9P2E7 1040 aa3.67□□□□□ -1.82
HDAC9-222ENST00000474742 ATN1P54259 1190 aaPredicted RBP3.66□□□□□ -1.82
HDAC9-222ENST00000474742 KIF12Q96FN5 646 aa3.65□□□□□ -1.83
HDAC9-222ENST00000474742 CCDC61Q9Y6R9 512 aa3.65□□□□□ -1.83
HDAC9-222ENST00000474742 MAP3K13O43283 966 aa3.64□□□□□ -1.83
HDAC9-222ENST00000474742 ZBTB47Q9UFB7 747 aaPredicted RBP3.64□□□□□ -1.83
HDAC9-222ENST00000474742 TIE1P35590 1138 aa3.63□□□□□ -1.83
HDAC9-222ENST00000474742 BMP2KQ9NSY1 1161 aaPredicted RBP3.63□□□□□ -1.83
HDAC9-222ENST00000474742 POTEJP0CG39 1038 aa3.62□□□□□ -1.83
HDAC9-222ENST00000474742 PCDHB13Q9Y5F0 798 aa3.62□□□□□ -1.83
HDAC9-222ENST00000474742 RASEFQ8IZ41 740 aa3.61□□□□□ -1.83
HDAC9-222ENST00000474742 TRPC6Q9Y210 931 aa3.61□□□□□ -1.83
HDAC9-222ENST00000474742 TTLL13PA6NNM8 815 aa3.6□□□□□ -1.83
HDAC9-222ENST00000474742 PLCG2P16885 1265 aa3.6□□□□□ -1.83
HDAC9-222ENST00000474742 FAM212AQ96EL1 285 aa3.6□□□□□ -1.83
HDAC9-222ENST00000474742 TRIM35Q9UPQ4 493 aa3.6□□□□□ -1.83
HDAC9-222ENST00000474742 CDAN1Q8IWY9 1227 aa3.59□□□□□ -1.83
HDAC9-222ENST00000474742 PROM2Q8N271 834 aa3.59□□□□□ -1.83
HDAC9-222ENST00000474742 SLAIN1Q8ND83 568 aa3.59□□□□□ -1.83
HDAC9-222ENST00000474742 TMEM106CQ9BVX2 250 aa3.59□□□□□ -1.83
HDAC9-222ENST00000474742 COLQQ9Y215 455 aaPredicted RBP3.59□□□□□ -1.83
HDAC9-222ENST00000474742 IER5LQ5T953 404 aa3.58□□□□□ -1.84
HDAC9-222ENST00000474742 SGIP1Q9BQI5 828 aa3.58□□□□□ -1.84
HDAC9-222ENST00000474742 POTEFA5A3E0 1075 aa3.57□□□□□ -1.84
HDAC9-222ENST00000474742 DCAF8Q5TAQ9 597 aa3.57□□□□□ -1.84
HDAC9-222ENST00000474742 LCE2DQ5TA82 110 aaPredicted RBP3.56□□□□□ -1.84
HDAC9-222ENST00000474742 IFNL1Q8IU54 200 aa3.56□□□□□ -1.84
HDAC9-222ENST00000474742 SNPHO15079 494 aa3.55□□□□□ -1.84
HDAC9-222ENST00000474742 GOLGA2Q08379 1002 aa3.55□□□□□ -1.84
HDAC9-222ENST00000474742 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.55□□□□□ -1.84
HDAC9-222ENST00000474742 ST18O60284 1047 aa3.54□□□□□ -1.84
HDAC9-222ENST00000474742 PYGBP11216 843 aa3.53□□□□□ -1.84
HDAC9-222ENST00000474742 NUBP1P53384 320 aa3.53□□□□□ -1.84
HDAC9-222ENST00000474742 FKBP8Q14318 412 aa3.53□□□□□ -1.84
HDAC9-222ENST00000474742 KLHL34Q8N239 644 aa3.53□□□□□ -1.84
HDAC9-222ENST00000474742 MKRN3Q13064 507 aaKnown RBP3.52□□□□□ -1.85
HDAC9-222ENST00000474742 C3orf67Q6ZVT6 689 aa3.52□□□□□ -1.85
HDAC9-222ENST00000474742 OCEL1Q9H607 264 aa3.52□□□□□ -1.85
HDAC9-222ENST00000474742 G3V3G9 751 aa3.51□□□□□ -1.85
HDAC9-222ENST00000474742 TMEM121BQ9BXQ6 578 aaPredicted RBP3.51□□□□□ -1.85
HDAC9-222ENST00000474742 FBXO3Q9UK99 471 aa3.51□□□□□ -1.85
HDAC9-222ENST00000474742 PCDHB8Q9UN66 801 aa3.51□□□□□ -1.85
HDAC9-222ENST00000474742 EMP3P54852 163 aa3.5□□□□□ -1.85
HDAC9-222ENST00000474742 IRX5P78411 483 aaPredicted RBP3.5□□□□□ -1.85
HDAC9-222ENST00000474742 MARVELD3Q96A59 401 aa3.5□□□□□ -1.85
HDAC9-222ENST00000474742 ZNF467Q7Z7K2 595 aaPredicted RBP3.49□□□□□ -1.85
HDAC9-222ENST00000474742 L3MBTL3Q96JM7 780 aaPredicted RBP3.49□□□□□ -1.85
HDAC9-222ENST00000474742 GSE1Q14687 1217 aa3.48□□□□□ -1.85
HDAC9-222ENST00000474742 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.48□□□□□ -1.85
HDAC9-222ENST00000474742 MMRN1Q13201 1228 aa3.47□□□□□ -1.85
HDAC9-222ENST00000474742 SPNS2Q8IVW8 549 aa3.47□□□□□ -1.85
HDAC9-222ENST00000474742 FAM205CA6NFA0 338 aa3.46□□□□□ -1.86
HDAC9-222ENST00000474742 ZNF710Q8N1W2 664 aa3.45□□□□□ -1.86
HDAC9-222ENST00000474742 PSEN1P49768 467 aa3.44□□□□□ -1.86
HDAC9-222ENST00000474742 CIZ1Q9ULV3 898 aaPredicted RBP3.44□□□□□ -1.86
HDAC9-222ENST00000474742 PDAP1Q13442 181 aaKnown RBP3.43□□□□□ -1.86
HDAC9-222ENST00000474742 PDCD7Q8N8D1 485 aaKnown RBP3.43□□□□□ -1.86
HDAC9-222ENST00000474742 HS3ST6Q96QI5 342 aa3.43□□□□□ -1.86
HDAC9-222ENST00000474742 VASPP50552 380 aaPredicted RBP3.42□□□□□ -1.86
HDAC9-222ENST00000474742 CABP2Q9NPB3 220 aa3.42□□□□□ -1.86
HDAC9-222ENST00000474742 ERBB3P21860 1342 aa3.42□□□□□ -1.86
HDAC9-222ENST00000474742 RIMBP2O15034 1052 aa3.41□□□□□ -1.86
HDAC9-222ENST00000474742 BOLA1Q9Y3E2 137 aa3.41□□□□□ -1.86
HDAC9-222ENST00000474742 CHRM1P11229 460 aaPredicted RBP3.4□□□□□ -1.87
HDAC9-222ENST00000474742 DOK7Q18PE1 504 aa3.4□□□□□ -1.87
HDAC9-222ENST00000474742 DPY19L2Q6NUT2 758 aa3.4□□□□□ -1.87
HDAC9-222ENST00000474742 SPOCK2Q92563 424 aa3.4□□□□□ -1.87
HDAC9-222ENST00000474742 KRTAP3-3Q9BYR6 98 aa3.38□□□□□ -1.87
HDAC9-222ENST00000474742 KRTAP3-2Q9BYR7 98 aa3.38□□□□□ -1.87
HDAC9-222ENST00000474742 POTEB3A0JP26 581 aa3.36□□□□□ -1.87
HDAC9-222ENST00000474742 HOXB3P14651 431 aaPredicted RBP3.36□□□□□ -1.87
HDAC9-222ENST00000474742 VARS2Q5ST30 1063 aaKnown RBP3.36□□□□□ -1.87
HDAC9-222ENST00000474742 POTEBQ6S5H4 581 aa3.36□□□□□ -1.87
HDAC9-222ENST00000474742 RNF166Q96A37 237 aaPredicted RBP3.36□□□□□ -1.87
HDAC9-222ENST00000474742 MYT1LQ9UL68 1186 aa3.36□□□□□ -1.87
HDAC9-222ENST00000474742 HOXB1P14653 301 aaPredicted RBP3.35□□□□□ -1.87
HDAC9-222ENST00000474742 ANKRD13DQ6ZTN6 518 aa3.34□□□□□ -1.87
HDAC9-222ENST00000474742 EFCAB3Q8N7B9 438 aa3.34□□□□□ -1.87
HDAC9-222ENST00000474742 TRIM41Q8WV44 630 aa3.33□□□□□ -1.88
HDAC9-222ENST00000474742 ILDR1Q86SU0 546 aaPredicted RBP3.32□□□□□ -1.88
HDAC9-222ENST00000474742 IFNLR1Q8IU57 520 aaPredicted RBP3.32□□□□□ -1.88
HDAC9-222ENST00000474742 ZSWIM6Q9HCJ5 1215 aa3.32□□□□□ -1.88
HDAC9-222ENST00000474742 PTGER2P43116 358 aa3.31□□□□□ -1.88
HDAC9-222ENST00000474742 MICALL2Q8IY33 904 aa3.31□□□□□ -1.88
HDAC9-222ENST00000474742 RIOK3O14730 519 aaKnown RBP3.3□□□□□ -1.88
HDAC9-222ENST00000474742 SOX12O15370 315 aa3.3□□□□□ -1.88
HDAC9-222ENST00000474742 ARSIQ5FYB1 569 aa3.3□□□□□ -1.88
HDAC9-222ENST00000474742 ZNF687Q8N1G0 1237 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms