RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MIER1Q8N108 512 aa13.89□□□□□ -0.19
CCDC88A-212ENST00000474059 ATMINO43313 823 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-212ENST00000474059 KIF12Q96FN5 646 aa13.88□□□□□ -0.19
CCDC88A-212ENST00000474059 FKBP8Q14318 412 aa13.87□□□□□ -0.19
CCDC88A-212ENST00000474059 OTUD5Q96G74 571 aa13.87□□□□□ -0.19
CCDC88A-212ENST00000474059 TRPC6Q9Y210 931 aa13.85□□□□□ -0.19
CCDC88A-212ENST00000474059 POTEJP0CG39 1038 aa13.81□□□□□ -0.2
CCDC88A-212ENST00000474059 MAP3K13O43283 966 aa13.79□□□□□ -0.2
CCDC88A-212ENST00000474059 NUBP1P53384 320 aa13.79□□□□□ -0.2
CCDC88A-212ENST00000474059 ATN1P54259 1190 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-212ENST00000474059 METRNQ9UJH8 293 aa13.77□□□□□ -0.21
CCDC88A-212ENST00000474059 BMP2KQ9NSY1 1161 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-212ENST00000474059 PLCD3Q8N3E9 789 aa13.75□□□□□ -0.21
CCDC88A-212ENST00000474059 PLEKHG5O94827 1062 aa13.73□□□□□ -0.21
CCDC88A-212ENST00000474059 POTEFA5A3E0 1075 aa13.72□□□□□ -0.21
CCDC88A-212ENST00000474059 C7P10643 843 aa13.71□□□□□ -0.21
CCDC88A-212ENST00000474059 SLC39A7Q92504 469 aa13.71□□□□□ -0.21
CCDC88A-212ENST00000474059 TIE1P35590 1138 aa13.65□□□□□ -0.22
CCDC88A-212ENST00000474059 TTLL13PA6NNM8 815 aa13.63□□□□□ -0.23
CCDC88A-212ENST00000474059 PLSCR2Q9NRY7 297 aa13.63□□□□□ -0.23
CCDC88A-212ENST00000474059 ZBTB47Q9UFB7 747 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-212ENST00000474059 IFNL1Q8IU54 200 aa13.58□□□□□ -0.24
CCDC88A-212ENST00000474059 SGIP1Q9BQI5 828 aa13.58□□□□□ -0.24
CCDC88A-212ENST00000474059 PCDHB13Q9Y5F0 798 aa13.57□□□□□ -0.24
CCDC88A-212ENST00000474059 COLQQ9Y215 455 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-212ENST00000474059 FAM212AQ96EL1 285 aa13.53□□□□□ -0.24
CCDC88A-212ENST00000474059 LCE2DQ5TA82 110 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-212ENST00000474059 TRIM35Q9UPQ4 493 aa13.5□□□□□ -0.25
CCDC88A-212ENST00000474059 FBXO3Q9UK99 471 aa13.48□□□□□ -0.25
CCDC88A-212ENST00000474059 VASPP50552 380 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-212ENST00000474059 PYGBP11216 843 aa13.44□□□□□ -0.26
CCDC88A-212ENST00000474059 MAMSTRQ6ZN01 415 aa13.44□□□□□ -0.26
CCDC88A-212ENST00000474059 TMEM106CQ9BVX2 250 aa13.43□□□□□ -0.26
CCDC88A-212ENST00000474059 IER5LQ5T953 404 aa13.42□□□□□ -0.26
CCDC88A-212ENST00000474059 POTEMA6NI47 508 aa13.41□□□□□ -0.26
CCDC88A-212ENST00000474059 DCAF8Q5TAQ9 597 aa13.41□□□□□ -0.26
CCDC88A-212ENST00000474059 POTEGQ6S5H5 508 aa13.39□□□□□ -0.27
CCDC88A-212ENST00000474059 SCUBE2Q9NQ36 999 aa13.39□□□□□ -0.27
CCDC88A-212ENST00000474059 PCDHB8Q9UN66 801 aa13.37□□□□□ -0.27
CCDC88A-212ENST00000474059 SEC24BO95487 1268 aa13.35□□□□□ -0.27
CCDC88A-212ENST00000474059 IRX5P78411 483 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-212ENST00000474059 IFNLR1Q8IU57 520 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-212ENST00000474059 KLHL34Q8N239 644 aa13.27□□□□□ -0.29
CCDC88A-212ENST00000474059 FAM163AQ96GL9 167 aaPredicted RBP13.26□□□□□ -0.29
CCDC88A-212ENST00000474059 CHRM1P11229 460 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-212ENST00000474059 GSE1Q14687 1217 aa13.24□□□□□ -0.29
CCDC88A-212ENST00000474059 PLCG2P16885 1265 aa13.23□□□□□ -0.29
CCDC88A-212ENST00000474059 OCEL1Q9H607 264 aa13.19□□□□□ -0.3
CCDC88A-212ENST00000474059 PDCD7Q8N8D1 485 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-212ENST00000474059 ZNF467Q7Z7K2 595 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-212ENST00000474059 SLAIN1Q8ND83 568 aa13.16□□□□□ -0.3
CCDC88A-212ENST00000474059 SPOCK2Q92563 424 aa13.14□□□□□ -0.31
CCDC88A-212ENST00000474059 PSEN1P49768 467 aa13.11□□□□□ -0.31
CCDC88A-212ENST00000474059 PCDH10Q9P2E7 1040 aa13.11□□□□□ -0.31
CCDC88A-212ENST00000474059 ILDR1Q86SU0 546 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-212ENST00000474059 ST18O60284 1047 aa13.08□□□□□ -0.32
CCDC88A-212ENST00000474059 PDAP1Q13442 181 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-212ENST00000474059 CIZ1Q9ULV3 898 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-212ENST00000474059 MKRN3Q13064 507 aaKnown RBP13□□□□□ -0.33
CCDC88A-212ENST00000474059 DPY19L2Q6NUT2 758 aa12.99□□□□□ -0.33
CCDC88A-212ENST00000474059 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.333e-7■■■■■ 33.3
CCDC88A-212ENST00000474059 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-212ENST00000474059 CDAN1Q8IWY9 1227 aa12.96□□□□□ -0.33
CCDC88A-212ENST00000474059 CABP2Q9NPB3 220 aa12.95□□□□□ -0.34
CCDC88A-212ENST00000474059 GOLGA2Q08379 1002 aa12.94□□□□□ -0.34
CCDC88A-212ENST00000474059 L3MBTL3Q96JM7 780 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-212ENST00000474059 RNF25Q96BH1 459 aaPredicted RBP12.9□□□□□ -0.34
CCDC88A-212ENST00000474059 C3orf67Q6ZVT6 689 aa12.87□□□□□ -0.35
CCDC88A-212ENST00000474059 TMEM121BQ9BXQ6 578 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-212ENST00000474059 MARVELD3Q96A59 401 aa12.86□□□□□ -0.35
CCDC88A-212ENST00000474059 TRIM41Q8WV44 630 aa12.84□□□□□ -0.35
CCDC88A-212ENST00000474059 SNPHO15079 494 aa12.83□□□□□ -0.36
CCDC88A-212ENST00000474059 EFCAB3Q8N7B9 438 aa12.83□□□□□ -0.36
CCDC88A-212ENST00000474059 BOLA1Q9Y3E2 137 aa12.81□□□□□ -0.36
CCDC88A-212ENST00000474059 POTEB3A0JP26 581 aa12.8□□□□□ -0.36
CCDC88A-212ENST00000474059 POTEBQ6S5H4 581 aa12.8□□□□□ -0.36
CCDC88A-212ENST00000474059 HOXB3P14651 431 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-212ENST00000474059 MS4A4AQ96JQ5 239 aa12.75□□□□□ -0.37
CCDC88A-212ENST00000474059 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-212ENST00000474059 RIOK3O14730 519 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-212ENST00000474059 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-212ENST00000474059 TMEM92Q6UXU6 159 aa12.73□□□□□ -0.37
CCDC88A-212ENST00000474059 EMP3P54852 163 aa12.68□□□□□ -0.38
CCDC88A-212ENST00000474059 SPNS2Q8IVW8 549 aa12.68□□□□□ -0.38
CCDC88A-212ENST00000474059 KRTAP3-3Q9BYR6 98 aa12.68□□□□□ -0.38
CCDC88A-212ENST00000474059 KRTAP3-2Q9BYR7 98 aa12.68□□□□□ -0.38
CCDC88A-212ENST00000474059 VGFO15240 615 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-212ENST00000474059 MICALL2Q8IY33 904 aa12.67□□□□□ -0.38
CCDC88A-212ENST00000474059 HS3ST6Q96QI5 342 aa12.67□□□□□ -0.38
CCDC88A-212ENST00000474059 PHF8Q9UPP1 1060 aa12.66□□□□□ -0.38
CCDC88A-212ENST00000474059 MMRN1Q13201 1228 aa12.64□□□□□ -0.39
CCDC88A-212ENST00000474059 FAM205CA6NFA0 338 aa12.63□□□□□ -0.39
CCDC88A-212ENST00000474059 SOX12O15370 315 aa12.63□□□□□ -0.39
CCDC88A-212ENST00000474059 G3V3G9 751 aa12.61□□□□□ -0.39
CCDC88A-212ENST00000474059 FBXO22Q8NEZ5 403 aa12.6□□□□□ -0.39
CCDC88A-212ENST00000474059 HOXB1P14653 301 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-212ENST00000474059 BCL11BQ9C0K0 894 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-212ENST00000474059 PKD2Q13563 968 aa12.53□□□□□ -0.4
CCDC88A-212ENST00000474059 MFRPQ9BY79 579 aa12.53□□□□□ -0.4
CCDC88A-212ENST00000474059 DOK7Q18PE1 504 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms