RNA–Protein interactions for RNA: ENST00000473961.5

BRCA1-212, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 958 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-212ENST00000473961 SLC39A7Q92504 469 aa11.61□□□□□ -0.55
BRCA1-212ENST00000473961 FAM163AQ96GL9 167 aaPredicted RBP11.6□□□□□ -0.55
BRCA1-212ENST00000473961 ATMINO43313 823 aaPredicted RBP11.59□□□□□ -0.55
BRCA1-212ENST00000473961 C7P10643 843 aa11.59□□□□□ -0.55
BRCA1-212ENST00000473961 MS4A3Q96HJ5 214 aa11.58□□□□□ -0.56
BRCA1-212ENST00000473961 STAG3Q9UJ98 1225 aa11.54□□□□□ -0.56
BRCA1-212ENST00000473961 SCUBE2Q9NQ36 999 aa11.51□□□□□ -0.57
BRCA1-212ENST00000473961 MNX1P50219 401 aaPredicted RBP11.5□□□□□ -0.57
BRCA1-212ENST00000473961 NPM1P06748 294 aaKnown RBP eCLIP11.46□□□□□ -0.57
BRCA1-212ENST00000473961 POTEFA5A3E0 1075 aa11.45□□□□□ -0.58
BRCA1-212ENST00000473961 CDAN1Q8IWY9 1227 aa11.45□□□□□ -0.58
BRCA1-212ENST00000473961 ATN1P54259 1190 aaPredicted RBP11.44□□□□□ -0.58
BRCA1-212ENST00000473961 BMP2KQ9NSY1 1161 aaPredicted RBP11.33□□□□□ -0.6
BRCA1-212ENST00000473961 CCDC61Q9Y6R9 512 aa11.3□□□□□ -0.6
BRCA1-212ENST00000473961 TRPC6Q9Y210 931 aa11.29□□□□□ -0.6
BRCA1-212ENST00000473961 TSPYL2Q9H2G4 693 aaPredicted RBP11.27□□□□□ -0.61
BRCA1-212ENST00000473961 KIF12Q96FN5 646 aa11.26□□□□□ -0.61
BRCA1-212ENST00000473961 COLQQ9Y215 455 aaPredicted RBP11.26□□□□□ -0.61
BRCA1-212ENST00000473961 SPDYE4A6NLX3 237 aa11.25□□□□□ -0.61
BRCA1-212ENST00000473961 MMRN1Q13201 1228 aa11.24□□□□□ -0.61
BRCA1-212ENST00000473961 ST18O60284 1047 aa11.23□□□□□ -0.61
BRCA1-212ENST00000473961 TIE1P35590 1138 aa11.21□□□□□ -0.61
BRCA1-212ENST00000473961 SPNS2Q8IVW8 549 aa11.19□□□□□ -0.62
BRCA1-212ENST00000473961 SEC24BO95487 1268 aa11.17□□□□□ -0.62
BRCA1-212ENST00000473961 TTLL13PA6NNM8 815 aa11.15□□□□□ -0.62
BRCA1-212ENST00000473961 MAP3K13O43283 966 aa11.15□□□□□ -0.62
BRCA1-212ENST00000473961 SLAIN1Q8ND83 568 aa11.13□□□□□ -0.63
BRCA1-212ENST00000473961 IER5LQ5T953 404 aa11.09□□□□□ -0.63
BRCA1-212ENST00000473961 TRIM35Q9UPQ4 493 aa11.07□□□□□ -0.64
BRCA1-212ENST00000473961 RASEFQ8IZ41 740 aa11.01□□□□□ -0.65
BRCA1-212ENST00000473961 TMEM121BQ9BXQ6 578 aaPredicted RBP11.01□□□□□ -0.65
BRCA1-212ENST00000473961 MARVELD3Q96A59 401 aa10.96□□□□□ -0.65
BRCA1-212ENST00000473961 SGIP1Q9BQI5 828 aa10.93□□□□□ -0.66
BRCA1-212ENST00000473961 PLCG2P16885 1265 aa10.92□□□□□ -0.66
BRCA1-212ENST00000473961 PROM2Q8N271 834 aa10.92□□□□□ -0.66
BRCA1-212ENST00000473961 PCDHB13Q9Y5F0 798 aa10.92□□□□□ -0.66
BRCA1-212ENST00000473961 IRX5P78411 483 aaPredicted RBP10.91□□□□□ -0.66
BRCA1-212ENST00000473961 SNPHO15079 494 aa10.88□□□□□ -0.67
BRCA1-212ENST00000473961 IFNL1Q8IU54 200 aa10.87□□□□□ -0.67
BRCA1-212ENST00000473961 KRTAP3-3Q9BYR6 98 aa10.87□□□□□ -0.67
BRCA1-212ENST00000473961 KRTAP3-2Q9BYR7 98 aa10.87□□□□□ -0.67
BRCA1-212ENST00000473961 TMEM106CQ9BVX2 250 aa10.86□□□□□ -0.67
BRCA1-212ENST00000473961 POTEB3A0JP26 581 aa10.82□□□□□ -0.68
BRCA1-212ENST00000473961 POTEBQ6S5H4 581 aa10.82□□□□□ -0.68
BRCA1-212ENST00000473961 EMP3P54852 163 aa10.8□□□□□ -0.68
BRCA1-212ENST00000473961 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.8□□□□□ -0.68
BRCA1-212ENST00000473961 PLEKHG5O94827 1062 aa10.79□□□□□ -0.68
BRCA1-212ENST00000473961 HS3ST6Q96QI5 342 aa10.78□□□□□ -0.68
BRCA1-212ENST00000473961 OCEL1Q9H607 264 aa10.78□□□□□ -0.68
BRCA1-212ENST00000473961 MIER1Q8N108 512 aa10.77□□□□□ -0.69
BRCA1-212ENST00000473961 FAM205CA6NFA0 338 aa10.72□□□□□ -0.69
BRCA1-212ENST00000473961 NUBP1P53384 320 aa10.72□□□□□ -0.69
BRCA1-212ENST00000473961 AMER1Q5JTC6 1135 aaPredicted RBP10.66□□□□□ -0.7
BRCA1-212ENST00000473961 C3orf67Q6ZVT6 689 aa10.63□□□□□ -0.71
BRCA1-212ENST00000473961 PDCD7Q8N8D1 485 aaKnown RBP10.63□□□□□ -0.71
BRCA1-212ENST00000473961 FKBP8Q14318 412 aa10.61□□□□□ -0.71
BRCA1-212ENST00000473961 PLCD3Q8N3E9 789 aa10.61□□□□□ -0.71
BRCA1-212ENST00000473961 FAM212AQ96EL1 285 aa10.61□□□□□ -0.71
BRCA1-212ENST00000473961 RNF166Q96A37 237 aaPredicted RBP10.58□□□□□ -0.72
BRCA1-212ENST00000473961 ZBTB47Q9UFB7 747 aaPredicted RBP10.56□□□□□ -0.72
BRCA1-212ENST00000473961 PCDHB8Q9UN66 801 aa10.54□□□□□ -0.72
BRCA1-212ENST00000473961 L3MBTL3Q96JM7 780 aaPredicted RBP10.53□□□□□ -0.72
BRCA1-212ENST00000473961 PYGBP11216 843 aa10.51□□□□□ -0.73
BRCA1-212ENST00000473961 HOXB3P14651 431 aaPredicted RBP10.5□□□□□ -0.73
BRCA1-212ENST00000473961 RTN4Q9NQC3 1192 aaKnown RBP10.48□□□□□ -0.73
BRCA1-212ENST00000473961 MYT1LQ9UL68 1186 aa10.46□□□□□ -0.73
BRCA1-212ENST00000473961 HOXB1P14653 301 aaPredicted RBP10.45□□□□□ -0.74
BRCA1-212ENST00000473961 MKRN3Q13064 507 aaKnown RBP10.43□□□□□ -0.74
BRCA1-212ENST00000473961 ERBB3P21860 1342 aa10.42□□□□□ -0.74
BRCA1-212ENST00000473961 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.42□□□□□ -0.744e-6■■■■■ 27.4
BRCA1-212ENST00000473961 DCAF8Q5TAQ9 597 aa10.41□□□□□ -0.74
BRCA1-212ENST00000473961 SLC24A1O60721 1099 aa10.4□□□□□ -0.74
BRCA1-212ENST00000473961 GOLGA2Q08379 1002 aa10.39□□□□□ -0.75
BRCA1-212ENST00000473961 ILDR1Q86SU0 546 aaPredicted RBP10.38□□□□□ -0.75
BRCA1-212ENST00000473961 DPY19L2Q6NUT2 758 aa10.36□□□□□ -0.75
BRCA1-212ENST00000473961 ZNF710Q8N1W2 664 aa10.36□□□□□ -0.75
BRCA1-212ENST00000473961 VARS2Q5ST30 1063 aaKnown RBP10.35□□□□□ -0.75
BRCA1-212ENST00000473961 DOK7Q18PE1 504 aa10.32□□□□□ -0.76
BRCA1-212ENST00000473961 ZNF467Q7Z7K2 595 aaPredicted RBP10.32□□□□□ -0.76
BRCA1-212ENST00000473961 BOLA1Q9Y3E2 137 aa10.3□□□□□ -0.76
BRCA1-212ENST00000473961 PTGER2P43116 358 aa10.29□□□□□ -0.76
BRCA1-212ENST00000473961 ZNF687Q8N1G0 1237 aa10.29□□□□□ -0.76
BRCA1-212ENST00000473961 PSEN1P49768 467 aa10.27□□□□□ -0.77
BRCA1-212ENST00000473961 G3V3G9 751 aa10.24□□□□□ -0.77
BRCA1-212ENST00000473961 FBXO3Q9UK99 471 aa10.24□□□□□ -0.77
BRCA1-212ENST00000473961 RIMBP2O15034 1052 aa10.22□□□□□ -0.77
BRCA1-212ENST00000473961 CHRM1P11229 460 aaPredicted RBP10.18□□□□□ -0.78
BRCA1-212ENST00000473961 ZSWIM6Q9HCJ5 1215 aa10.18□□□□□ -0.78
BRCA1-212ENST00000473961 GSE1Q14687 1217 aa10.16□□□□□ -0.78
BRCA1-212ENST00000473961 GPR153Q6NV75 609 aa10.16□□□□□ -0.78
BRCA1-212ENST00000473961 ANKRD13DQ6ZTN6 518 aa10.16□□□□□ -0.78
BRCA1-212ENST00000473961 CABP2Q9NPB3 220 aa10.16□□□□□ -0.78
BRCA1-212ENST00000473961 PLA2G2EQ9NZK7 142 aa10.15□□□□□ -0.78
BRCA1-212ENST00000473961 PDAP1Q13442 181 aaKnown RBP10.14□□□□□ -0.79
BRCA1-212ENST00000473961 TMEM92Q6UXU6 159 aa10.13□□□□□ -0.79
BRCA1-212ENST00000473961 LSM11P83369 360 aaKnown RBP eCLIP10.1□□□□□ -0.79
BRCA1-212ENST00000473961 ARSIQ5FYB1 569 aa10.04□□□□□ -0.8
BRCA1-212ENST00000473961 ZNF316A6NFI3 1004 aaPredicted RBP10.03□□□□□ -0.8
BRCA1-212ENST00000473961 MICALL2Q8IY33 904 aa10.03□□□□□ -0.8
BRCA1-212ENST00000473961 HCSTQ9UBK5 93 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms