RNA–Protein interactions for RNA: ENST00000472625.1

XRN1-209, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-209ENST00000472625 FBXO3Q9UK99 471 aa8.01□□□□□ -1.13
XRN1-209ENST00000472625 IFNLR1Q8IU57 520 aaPredicted RBP7.99□□□□□ -1.13
XRN1-209ENST00000472625 MS4A3Q96HJ5 214 aa7.98□□□□□ -1.13
XRN1-209ENST00000472625 DCBLD2Q96PD2 775 aa7.97□□□□□ -1.13
XRN1-209ENST00000472625 CCDC61Q9Y6R9 512 aa7.97□□□□□ -1.13
XRN1-209ENST00000472625 NUBP1P53384 320 aa7.95□□□□□ -1.14
XRN1-209ENST00000472625 CLCN6P51797 869 aa7.92□□□□□ -1.14
XRN1-209ENST00000472625 KIF12Q96FN5 646 aa7.91□□□□□ -1.14
XRN1-209ENST00000472625 MAP3K13O43283 966 aa7.9□□□□□ -1.14
XRN1-209ENST00000472625 TRPC6Q9Y210 931 aa7.9□□□□□ -1.14
XRN1-209ENST00000472625 ZBTB47Q9UFB7 747 aaPredicted RBP7.89□□□□□ -1.15
XRN1-209ENST00000472625 PELP1Q8IZL8 1130 aaKnown RBP7.88□□□□□ -1.15
XRN1-209ENST00000472625 KLHL34Q8N239 644 aa7.87□□□□□ -1.15
XRN1-209ENST00000472625 CCDC180Q9P1Z9 1646 aa7.85□□□□□ -1.15
XRN1-209ENST00000472625 POTEMA6NI47 508 aa7.85□□□□□ -1.15
XRN1-209ENST00000472625 FAM212AQ96EL1 285 aa7.85□□□□□ -1.15
XRN1-209ENST00000472625 ATMINO43313 823 aaPredicted RBP7.84□□□□□ -1.15
XRN1-209ENST00000472625 DCAF8Q5TAQ9 597 aa7.84□□□□□ -1.15
XRN1-209ENST00000472625 PYGBP11216 843 aa7.82□□□□□ -1.16
XRN1-209ENST00000472625 ATN1P54259 1190 aaPredicted RBP7.82□□□□□ -1.16
XRN1-209ENST00000472625 BMP2KQ9NSY1 1161 aaPredicted RBP7.82□□□□□ -1.16
XRN1-209ENST00000472625 PCDHB13Q9Y5F0 798 aa7.82□□□□□ -1.16
XRN1-209ENST00000472625 ABCC9O60706 1549 aa7.82□□□□□ -1.16
XRN1-209ENST00000472625 ASTLQ6HA08 431 aaPredicted RBP7.81□□□□□ -1.16
XRN1-209ENST00000472625 POTEB2H3BUK9 544 aa7.8□□□□□ -1.16
XRN1-209ENST00000472625 POTEGQ6S5H5 508 aa7.8□□□□□ -1.16
XRN1-209ENST00000472625 IFNL1Q8IU54 200 aa7.79□□□□□ -1.16
XRN1-209ENST00000472625 METRNQ9UJH8 293 aa7.78□□□□□ -1.16
XRN1-209ENST00000472625 SPOCK2Q92563 424 aa7.77□□□□□ -1.17
XRN1-209ENST00000472625 TTLL13PA6NNM8 815 aa7.76□□□□□ -1.17
XRN1-209ENST00000472625 PCDHB8Q9UN66 801 aa7.75□□□□□ -1.17
XRN1-209ENST00000472625 TIE1P35590 1138 aa7.74□□□□□ -1.17
XRN1-209ENST00000472625 SLC39A7Q92504 469 aa7.73□□□□□ -1.17
XRN1-209ENST00000472625 SGIP1Q9BQI5 828 aa7.72□□□□□ -1.17
XRN1-209ENST00000472625 CIZ1Q9ULV3 898 aaPredicted RBP7.72□□□□□ -1.17
XRN1-209ENST00000472625 POTEFA5A3E0 1075 aa7.71□□□□□ -1.18
XRN1-209ENST00000472625 POTEJP0CG39 1038 aa7.71□□□□□ -1.18
XRN1-209ENST00000472625 PKD2Q13563 968 aa7.71□□□□□ -1.18
XRN1-209ENST00000472625 GSE1Q14687 1217 aa7.71□□□□□ -1.18
XRN1-209ENST00000472625 TMEM106CQ9BVX2 250 aa7.71□□□□□ -1.18
XRN1-209ENST00000472625 TRIM35Q9UPQ4 493 aa7.71□□□□□ -1.18
XRN1-209ENST00000472625 C7P10643 843 aa7.7□□□□□ -1.18
XRN1-209ENST00000472625 OTUD5Q96G74 571 aa7.7□□□□□ -1.18
XRN1-209ENST00000472625 COLQQ9Y215 455 aaPredicted RBP7.69□□□□□ -1.18
XRN1-209ENST00000472625 PCDH10Q9P2E7 1040 aa7.68□□□□□ -1.18
XRN1-209ENST00000472625 CHRM1P11229 460 aaPredicted RBP7.67□□□□□ -1.18
XRN1-209ENST00000472625 RNF25Q96BH1 459 aaPredicted RBP7.67□□□□□ -1.18
XRN1-209ENST00000472625 SEC24BO95487 1268 aa7.64□□□□□ -1.19
XRN1-209ENST00000472625 ZNF467Q7Z7K2 595 aaPredicted RBP7.61□□□□□ -1.19
XRN1-209ENST00000472625 PSEN1P49768 467 aa7.59□□□□□ -1.19
XRN1-209ENST00000472625 IER5LQ5T953 404 aa7.59□□□□□ -1.19
XRN1-209ENST00000472625 PLCG2P16885 1265 aa7.58□□□□□ -1.2
XRN1-209ENST00000472625 IRX5P78411 483 aaPredicted RBP7.57□□□□□ -1.2
XRN1-209ENST00000472625 RGL2O15211 777 aa7.56□□□□□ -1.2
XRN1-209ENST00000472625 SCUBE2Q9NQ36 999 aa7.56□□□□□ -1.2
XRN1-209ENST00000472625 GOLGA2Q08379 1002 aa7.54□□□□□ -1.2
XRN1-209ENST00000472625 PDAP1Q13442 181 aaKnown RBP7.54□□□□□ -1.2
XRN1-209ENST00000472625 MAMSTRQ6ZN01 415 aa7.54□□□□□ -1.2
XRN1-209ENST00000472625 TRIM41Q8WV44 630 aa7.54□□□□□ -1.2
XRN1-209ENST00000472625 CABP2Q9NPB3 220 aa7.53□□□□□ -1.2
XRN1-209ENST00000472625 ECM2O94769 699 aaPredicted RBP7.52□□□□□ -1.21
XRN1-209ENST00000472625 MKRN3Q13064 507 aaKnown RBP7.52□□□□□ -1.21
XRN1-209ENST00000472625 RTN4Q9NQC3 1192 aaKnown RBP7.52□□□□□ -1.21
XRN1-209ENST00000472625 RB1CC1Q8TDY2 1594 aa7.51□□□□□ -1.21
XRN1-209ENST00000472625 PDCD7Q8N8D1 485 aaKnown RBP7.51□□□□□ -1.21
XRN1-209ENST00000472625 OCEL1Q9H607 264 aa7.51□□□□□ -1.21
XRN1-209ENST00000472625 RIOK3O14730 519 aaKnown RBP7.49□□□□□ -1.21
XRN1-209ENST00000472625 FAM163AQ96GL9 167 aaPredicted RBP7.49□□□□□ -1.21
XRN1-209ENST00000472625 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.49□□□□□ -1.211e-7■■■■□ 20.9
XRN1-209ENST00000472625 DPY19L2Q6NUT2 758 aa7.48□□□□□ -1.21
XRN1-209ENST00000472625 SLAIN1Q8ND83 568 aa7.48□□□□□ -1.21
XRN1-209ENST00000472625 LCE2DQ5TA82 110 aaPredicted RBP7.47□□□□□ -1.21
XRN1-209ENST00000472625 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.46□□□□□ -1.22
XRN1-209ENST00000472625 ILDR1Q86SU0 546 aaPredicted RBP7.46□□□□□ -1.22
XRN1-209ENST00000472625 ZFP91Q96JP5 570 aaPredicted RBP7.46□□□□□ -1.22
XRN1-209ENST00000472625 EFCAB3Q8N7B9 438 aa7.45□□□□□ -1.22
XRN1-209ENST00000472625 NACADO15069 1562 aa7.45□□□□□ -1.22
XRN1-209ENST00000472625 VGFO15240 615 aaPredicted RBP7.43□□□□□ -1.22
XRN1-209ENST00000472625 AMER1Q5JTC6 1135 aaPredicted RBP7.42□□□□□ -1.22
XRN1-209ENST00000472625 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.41□□□□□ -1.22
XRN1-209ENST00000472625 C3orf67Q6ZVT6 689 aa7.39□□□□□ -1.23
XRN1-209ENST00000472625 BCL11BQ9C0K0 894 aaPredicted RBP7.38□□□□□ -1.23
XRN1-209ENST00000472625 MYO15BQ96JP2 1530 aa7.37□□□□□ -1.23
XRN1-209ENST00000472625 L3MBTL3Q96JM7 780 aaPredicted RBP7.37□□□□□ -1.23
XRN1-209ENST00000472625 DNAJC5Q9H3Z4 198 aa7.37□□□□□ -1.23
XRN1-209ENST00000472625 PHF8Q9UPP1 1060 aa7.37□□□□□ -1.23
XRN1-209ENST00000472625 STK24Q9Y6E0 443 aa7.37□□□□□ -1.23
XRN1-209ENST00000472625 NKX1-1Q15270 411 aaPredicted RBP7.36□□□□□ -1.23
XRN1-209ENST00000472625 CDAN1Q8IWY9 1227 aa7.36□□□□□ -1.23
XRN1-209ENST00000472625 HS6ST3Q8IZP7 471 aa7.36□□□□□ -1.23
XRN1-209ENST00000472625 MS4A4AQ96JQ5 239 aa7.36□□□□□ -1.23
XRN1-209ENST00000472625 BOLA1Q9Y3E2 137 aa7.36□□□□□ -1.23
XRN1-209ENST00000472625 STK25O00506 426 aa7.35□□□□□ -1.23
XRN1-209ENST00000472625 ST18O60284 1047 aa7.35□□□□□ -1.23
XRN1-209ENST00000472625 FBXO22Q8NEZ5 403 aa7.35□□□□□ -1.23
XRN1-209ENST00000472625 MFRPQ9BY79 579 aa7.34□□□□□ -1.23
XRN1-209ENST00000472625 G3V3G9 751 aa7.33□□□□□ -1.24
XRN1-209ENST00000472625 SOX12O15370 315 aa7.31□□□□□ -1.24
XRN1-209ENST00000472625 MICALL2Q8IY33 904 aa7.3□□□□□ -1.24
XRN1-209ENST00000472625 MARVELD3Q96A59 401 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms