RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 ATMINO43313 823 aaPredicted RBP18.57■□□□□ 0.56
SCN9A-206ENST00000472119 POTEMA6NI47 508 aa18.56■□□□□ 0.56
SCN9A-206ENST00000472119 SLC39A7Q92504 469 aa18.55■□□□□ 0.56
SCN9A-206ENST00000472119 C7P10643 843 aa18.52■□□□□ 0.56
SCN9A-206ENST00000472119 POTEGQ6S5H5 508 aa18.5■□□□□ 0.55
SCN9A-206ENST00000472119 POTEJP0CG39 1038 aa18.44■□□□□ 0.54
SCN9A-206ENST00000472119 CCDC61Q9Y6R9 512 aa18.44■□□□□ 0.54
SCN9A-206ENST00000472119 PROM2Q8N271 834 aa18.43■□□□□ 0.54
SCN9A-206ENST00000472119 ATN1P54259 1190 aaPredicted RBP18.41■□□□□ 0.54
SCN9A-206ENST00000472119 MAMSTRQ6ZN01 415 aa18.4■□□□□ 0.54
SCN9A-206ENST00000472119 KIF12Q96FN5 646 aa18.37■□□□□ 0.53
SCN9A-206ENST00000472119 PLEKHG5O94827 1062 aa18.32■□□□□ 0.52
SCN9A-206ENST00000472119 SCUBE2Q9NQ36 999 aa18.31■□□□□ 0.52
SCN9A-206ENST00000472119 MIER1Q8N108 512 aa18.29■□□□□ 0.52
SCN9A-206ENST00000472119 BMP2KQ9NSY1 1161 aaPredicted RBP18.29■□□□□ 0.52
SCN9A-206ENST00000472119 TRPC6Q9Y210 931 aa18.29■□□□□ 0.52
SCN9A-206ENST00000472119 MAP3K13O43283 966 aa18.26■□□□□ 0.51
SCN9A-206ENST00000472119 FAM163AQ96GL9 167 aaPredicted RBP18.25■□□□□ 0.51
SCN9A-206ENST00000472119 RASEFQ8IZ41 740 aa18.23■□□□□ 0.51
SCN9A-206ENST00000472119 PCDH10Q9P2E7 1040 aa18.22■□□□□ 0.51
SCN9A-206ENST00000472119 POTEFA5A3E0 1075 aa18.2■□□□□ 0.5
SCN9A-206ENST00000472119 TIE1P35590 1138 aa18.2■□□□□ 0.5
SCN9A-206ENST00000472119 LCE2DQ5TA82 110 aaPredicted RBP18.17■□□□□ 0.5
SCN9A-206ENST00000472119 SEC24BO95487 1268 aa18.12■□□□□ 0.49
SCN9A-206ENST00000472119 TTLL13PA6NNM8 815 aa18.11■□□□□ 0.49
SCN9A-206ENST00000472119 PLCD3Q8N3E9 789 aa18.1■□□□□ 0.49
SCN9A-206ENST00000472119 COLQQ9Y215 455 aaPredicted RBP18.08■□□□□ 0.48
SCN9A-206ENST00000472119 PCDHB13Q9Y5F0 798 aa18.03■□□□□ 0.48
SCN9A-206ENST00000472119 TRIM35Q9UPQ4 493 aa18.02■□□□□ 0.48
SCN9A-206ENST00000472119 SGIP1Q9BQI5 828 aa17.97■□□□□ 0.47
SCN9A-206ENST00000472119 ZBTB47Q9UFB7 747 aaPredicted RBP17.95■□□□□ 0.46
SCN9A-206ENST00000472119 IER5LQ5T953 404 aa17.94■□□□□ 0.46
SCN9A-206ENST00000472119 NUBP1P53384 320 aa17.91■□□□□ 0.46
SCN9A-206ENST00000472119 IFNL1Q8IU54 200 aa17.89■□□□□ 0.45
SCN9A-206ENST00000472119 FAM212AQ96EL1 285 aa17.86■□□□□ 0.45
SCN9A-206ENST00000472119 TMEM106CQ9BVX2 250 aa17.85■□□□□ 0.45
SCN9A-206ENST00000472119 SLAIN1Q8ND83 568 aa17.84■□□□□ 0.45
SCN9A-206ENST00000472119 CDAN1Q8IWY9 1227 aa17.81■□□□□ 0.44
SCN9A-206ENST00000472119 PLCG2P16885 1265 aa17.8■□□□□ 0.44
SCN9A-206ENST00000472119 ST18O60284 1047 aa17.72■□□□□ 0.43
SCN9A-206ENST00000472119 IRX5P78411 483 aaPredicted RBP17.68■□□□□ 0.42
SCN9A-206ENST00000472119 FKBP8Q14318 412 aa17.66■□□□□ 0.42
SCN9A-206ENST00000472119 DCAF8Q5TAQ9 597 aa17.66■□□□□ 0.42
SCN9A-206ENST00000472119 PYGBP11216 843 aa17.64■□□□□ 0.41
SCN9A-206ENST00000472119 OCEL1Q9H607 264 aa17.6■□□□□ 0.41
SCN9A-206ENST00000472119 PCDHB8Q9UN66 801 aa17.57■□□□□ 0.4
SCN9A-206ENST00000472119 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.53■□□□□ 0.4
SCN9A-206ENST00000472119 SNPHO15079 494 aa17.47■□□□□ 0.39
SCN9A-206ENST00000472119 TMEM121BQ9BXQ6 578 aaPredicted RBP17.47■□□□□ 0.39
SCN9A-206ENST00000472119 MARVELD3Q96A59 401 aa17.42■□□□□ 0.38
SCN9A-206ENST00000472119 FBXO3Q9UK99 471 aa17.41■□□□□ 0.38
SCN9A-206ENST00000472119 GOLGA2Q08379 1002 aa17.38■□□□□ 0.37
SCN9A-206ENST00000472119 MMRN1Q13201 1228 aa17.37■□□□□ 0.37
SCN9A-206ENST00000472119 C3orf67Q6ZVT6 689 aa17.36■□□□□ 0.37
SCN9A-206ENST00000472119 SPNS2Q8IVW8 549 aa17.36■□□□□ 0.37
SCN9A-206ENST00000472119 KLHL34Q8N239 644 aa17.36■□□□□ 0.37
SCN9A-206ENST00000472119 MKRN3Q13064 507 aaKnown RBP17.35■□□□□ 0.37
SCN9A-206ENST00000472119 ZNF467Q7Z7K2 595 aaPredicted RBP17.34■□□□□ 0.37
SCN9A-206ENST00000472119 PDCD7Q8N8D1 485 aaKnown RBP17.34■□□□□ 0.37
SCN9A-206ENST00000472119 GSE1Q14687 1217 aa17.32■□□□□ 0.36
SCN9A-206ENST00000472119 L3MBTL3Q96JM7 780 aaPredicted RBP17.29■□□□□ 0.36
SCN9A-206ENST00000472119 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.26■□□□□ 0.354e-7■■■□□ 15.5
SCN9A-206ENST00000472119 EMP3P54852 163 aa17.25■□□□□ 0.35
SCN9A-206ENST00000472119 PSEN1P49768 467 aa17.22■□□□□ 0.35
SCN9A-206ENST00000472119 VASPP50552 380 aaPredicted RBP17.22■□□□□ 0.35
SCN9A-206ENST00000472119 CHRM1P11229 460 aaPredicted RBP17.17■□□□□ 0.34
SCN9A-206ENST00000472119 FAM205CA6NFA0 338 aa17.13■□□□□ 0.33
SCN9A-206ENST00000472119 HS3ST6Q96QI5 342 aa17.13■□□□□ 0.33
SCN9A-206ENST00000472119 POTEB3A0JP26 581 aa17.08■□□□□ 0.32
SCN9A-206ENST00000472119 PDAP1Q13442 181 aaKnown RBP17.08■□□□□ 0.32
SCN9A-206ENST00000472119 DPY19L2Q6NUT2 758 aa17.08■□□□□ 0.32
SCN9A-206ENST00000472119 POTEBQ6S5H4 581 aa17.08■□□□□ 0.32
SCN9A-206ENST00000472119 KRTAP3-3Q9BYR6 98 aa17.06■□□□□ 0.32
SCN9A-206ENST00000472119 KRTAP3-2Q9BYR7 98 aa17.06■□□□□ 0.32
SCN9A-206ENST00000472119 G3V3G9 751 aa17.05■□□□□ 0.32
SCN9A-206ENST00000472119 CABP2Q9NPB3 220 aa17.05■□□□□ 0.32
SCN9A-206ENST00000472119 ILDR1Q86SU0 546 aaPredicted RBP17.02■□□□□ 0.32
SCN9A-206ENST00000472119 CIZ1Q9ULV3 898 aaPredicted RBP17■□□□□ 0.31
SCN9A-206ENST00000472119 BOLA1Q9Y3E2 137 aa16.99■□□□□ 0.31
SCN9A-206ENST00000472119 SPOCK2Q92563 424 aa16.93■□□□□ 0.3
SCN9A-206ENST00000472119 HOXB3P14651 431 aaPredicted RBP16.92■□□□□ 0.3
SCN9A-206ENST00000472119 ZNF710Q8N1W2 664 aa16.92■□□□□ 0.3
SCN9A-206ENST00000472119 IFNLR1Q8IU57 520 aaPredicted RBP16.86■□□□□ 0.29
SCN9A-206ENST00000472119 HOXB1P14653 301 aaPredicted RBP16.85■□□□□ 0.29
SCN9A-206ENST00000472119 ERBB3P21860 1342 aa16.84■□□□□ 0.29
SCN9A-206ENST00000472119 DOK7Q18PE1 504 aa16.83■□□□□ 0.28
SCN9A-206ENST00000472119 EFCAB3Q8N7B9 438 aa16.76■□□□□ 0.27
SCN9A-206ENST00000472119 RIMBP2O15034 1052 aa16.75■□□□□ 0.27
SCN9A-206ENST00000472119 VARS2Q5ST30 1063 aaKnown RBP16.71■□□□□ 0.27
SCN9A-206ENST00000472119 RNF166Q96A37 237 aaPredicted RBP16.68■□□□□ 0.26
SCN9A-206ENST00000472119 MICALL2Q8IY33 904 aa16.65■□□□□ 0.26
SCN9A-206ENST00000472119 TMEM92Q6UXU6 159 aa16.62■□□□□ 0.25
SCN9A-206ENST00000472119 TRIM41Q8WV44 630 aa16.62■□□□□ 0.25
SCN9A-206ENST00000472119 MYT1LQ9UL68 1186 aa16.59■□□□□ 0.25
SCN9A-206ENST00000472119 ZSWIM6Q9HCJ5 1215 aa16.58■□□□□ 0.24
SCN9A-206ENST00000472119 ZNF687Q8N1G0 1237 aa16.55■□□□□ 0.24
SCN9A-206ENST00000472119 SOX12O15370 315 aa16.52■□□□□ 0.24
SCN9A-206ENST00000472119 GPR153Q6NV75 609 aa16.52■□□□□ 0.24
SCN9A-206ENST00000472119 MS4A4AQ96JQ5 239 aa16.5■□□□□ 0.23
SCN9A-206ENST00000472119 PHF8Q9UPP1 1060 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms