RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	FARP1	Q9Y4F1	1045 aa	Predicted RBP	9.67	□□□□□ -0.86
PTCD3-209	ENST00000472044	CHRDL2	Q6WN34	429 aa		9.66	□□□□□ -0.86
PTCD3-209	ENST00000472044	PRKAR2A	P13861	404 aa	Known RBP	9.65	□□□□□ -0.86
PTCD3-209	ENST00000472044	BBX	Q8WY36	941 aa	Predicted RBP	9.65	□□□□□ -0.86
PTCD3-209	ENST00000472044	RNF25	Q96BH1	459 aa	Predicted RBP	9.63	□□□□□ -0.87
PTCD3-209	ENST00000472044	PIP4P2	Q8N4L2	257 aa		9.6	□□□□□ -0.87
PTCD3-209	ENST00000472044	TAOK2	Q9UL54	1235 aa		9.6	□□□□□ -0.87
PTCD3-209	ENST00000472044	RIOK3	O14730	519 aa	Known RBP	9.59	□□□□□ -0.87
PTCD3-209	ENST00000472044	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	9.59	□□□□□ -0.87
PTCD3-209	ENST00000472044	CHGA	P10645	457 aa	Known RBP	9.57	□□□□□ -0.88
PTCD3-209	ENST00000472044	HS6ST3	Q8IZP7	471 aa		9.57	□□□□□ -0.88
PTCD3-209	ENST00000472044	DNAJC5	Q9H3Z4	198 aa		9.57	□□□□□ -0.88
PTCD3-209	ENST00000472044	SGIP1	Q9BQI5	828 aa		9.55	□□□□□ -0.88
PTCD3-209	ENST00000472044	VGF	O15240	615 aa	Predicted RBP	9.54	□□□□□ -0.88
PTCD3-209	ENST00000472044	PYGB	P11216	843 aa		9.54	□□□□□ -0.88
PTCD3-209	ENST00000472044	TSPYL2	Q9H2G4	693 aa	Predicted RBP	9.54	□□□□□ -0.88
PTCD3-209	ENST00000472044	CCDC61	Q9Y6R9	512 aa		9.52	□□□□□ -0.89
PTCD3-209	ENST00000472044	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	9.49	□□□□□ -0.89
PTCD3-209	ENST00000472044	SPRYD3	Q8NCJ5	442 aa		9.49	□□□□□ -0.89
PTCD3-209	ENST00000472044	HAP1	P54257	671 aa	Predicted RBP	9.48	□□□□□ -0.89
PTCD3-209	ENST00000472044	PAK3	O75914	559 aa	Predicted RBP	9.47	□□□□□ -0.89
PTCD3-209	ENST00000472044	ZNF467	Q7Z7K2	595 aa	Predicted RBP	9.47	□□□□□ -0.89
PTCD3-209	ENST00000472044	STK25	O00506	426 aa		9.45	□□□□□ -0.9
PTCD3-209	ENST00000472044	CFAP44	Q96MT7	982 aa		9.45	□□□□□ -0.9
PTCD3-209	ENST00000472044	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	9.44	□□□□□ -0.9
PTCD3-209	ENST00000472044	ZFP91	Q96JP5	570 aa	Predicted RBP	9.44	□□□□□ -0.9
PTCD3-209	ENST00000472044	VSIG10	Q8N0Z9	540 aa		9.42	□□□□□ -0.9
PTCD3-209	ENST00000472044	ZNF579	Q8NAF0	562 aa	Known RBP	9.42	□□□□□ -0.9
PTCD3-209	ENST00000472044	NKX1-1	Q15270	411 aa	Predicted RBP	9.41	□□□□□ -0.9
PTCD3-209	ENST00000472044	BCL11B	Q9C0K0	894 aa	Predicted RBP	9.41	□□□□□ -0.9
PTCD3-209	ENST00000472044	KIF12	Q96FN5	646 aa		9.4	□□□□□ -0.9
PTCD3-209	ENST00000472044	CD44	P16070	742 aa	Known RBP	9.39	□□□□□ -0.91
PTCD3-209	ENST00000472044	PDAP1	Q13442	181 aa	Known RBP	9.39	□□□□□ -0.91
PTCD3-209	ENST00000472044	STK24	Q9Y6E0	443 aa		9.39	□□□□□ -0.91
PTCD3-209	ENST00000472044	PCDHB8	Q9UN66	801 aa		9.38	□□□□□ -0.91
PTCD3-209	ENST00000472044	PCDHB13	Q9Y5F0	798 aa		9.38	□□□□□ -0.91
PTCD3-209	ENST00000472044	MAP3K13	O43283	966 aa		9.37	□□□□□ -0.91
PTCD3-209	ENST00000472044	GTPBP6	O43824	516 aa	Predicted RBP	9.37	□□□□□ -0.91
PTCD3-209	ENST00000472044	ZRANB1	Q9UGI0	708 aa		9.37	□□□□□ -0.91
PTCD3-209	ENST00000472044	C19orf67	A6NJJ6	358 aa		9.36	□□□□□ -0.91
PTCD3-209	ENST00000472044	IFNL1	Q8IU54	200 aa		9.35	□□□□□ -0.91
PTCD3-209	ENST00000472044	PSEN1	P49768	467 aa		9.34	□□□□□ -0.91
PTCD3-209	ENST00000472044	RYDEN	Q9NUL5	291 aa	Known RBP	9.34	□□□□□ -0.91
PTCD3-209	ENST00000472044	TSHZ2	Q9NRE2	1034 aa		9.33	□□□□□ -0.92
PTCD3-209	ENST00000472044	KDM2A	Q9Y2K7	1162 aa		9.31	□□□□□ -0.92
PTCD3-209	ENST00000472044	PHF12	Q96QT6	1004 aa		9.3	□□□□□ -0.92
PTCD3-209	ENST00000472044	SP7	Q8TDD2	431 aa	Predicted RBP	9.28	□□□□□ -0.92
PTCD3-209	ENST00000472044	SOX12	O15370	315 aa		9.22	□□□□□ -0.93
PTCD3-209	ENST00000472044	CLCN6	P51797	869 aa		9.22	□□□□□ -0.93
PTCD3-209	ENST00000472044	MS4A3	Q96HJ5	214 aa		9.22	□□□□□ -0.93
PTCD3-209	ENST00000472044	MFRP	Q9BY79	579 aa		9.22	□□□□□ -0.93
PTCD3-209	ENST00000472044	CABP2	Q9NPB3	220 aa		9.21	□□□□□ -0.94
PTCD3-209	ENST00000472044	EFCAB3	Q8N7B9	438 aa		9.2	□□□□□ -0.94
PTCD3-209	ENST00000472044	HAX1	O00165	279 aa		9.19	□□□□□ -0.94
PTCD3-209	ENST00000472044	TIE1	P35590	1138 aa		9.18	□□□□□ -0.94
PTCD3-209	ENST00000472044	FBXO22	Q8NEZ5	403 aa		9.18	□□□□□ -0.94
PTCD3-209	ENST00000472044	NLRP6	P59044	892 aa		9.17	□□□□□ -0.94
PTCD3-209	ENST00000472044	BCAN	Q96GW7	911 aa		9.17	□□□□□ -0.94
PTCD3-209	ENST00000472044	TRPC6	Q9Y210	931 aa		9.17	□□□□□ -0.94
PTCD3-209	ENST00000472044	TMEM106C	Q9BVX2	250 aa		9.16	□□□□□ -0.94
PTCD3-209	ENST00000472044	EVX2	Q03828	476 aa		9.15	□□□□□ -0.94
PTCD3-209	ENST00000472044	PHF8	Q9UPP1	1060 aa		9.13	□□□□□ -0.95
PTCD3-209	ENST00000472044	GALR2	O43603	387 aa	Predicted RBP	9.12	□□□□□ -0.95
PTCD3-209	ENST00000472044	GOLGA2	Q08379	1002 aa		9.12	□□□□□ -0.95
PTCD3-209	ENST00000472044	TTLL13P	A6NNM8	815 aa		9.11	□□□□□ -0.95
PTCD3-209	ENST00000472044	BMP2K	Q9NSY1	1161 aa	Predicted RBP	9.1	□□□□□ -0.95
PTCD3-209	ENST00000472044	PPP1R37	O75864	691 aa		9.09	□□□□□ -0.95
PTCD3-209	ENST00000472044	ILDR1	Q86SU0	546 aa	Predicted RBP	9.09	□□□□□ -0.95
PTCD3-209	ENST00000472044	MKRN3	Q13064	507 aa	Known RBP	9.08	□□□□□ -0.96
PTCD3-209	ENST00000472044	MS4A4A	Q96JQ5	239 aa		9.08	□□□□□ -0.96
PTCD3-209	ENST00000472044	CADPS2	Q86UW7	1296 aa		9.07	□□□□□ -0.96
PTCD3-209	ENST00000472044	TRIM35	Q9UPQ4	493 aa		9.05	□□□□□ -0.96
PTCD3-209	ENST00000472044	ASTL	Q6HA08	431 aa	Predicted RBP	9.03	□□□□□ -0.96
PTCD3-209	ENST00000472044	ATMIN	O43313	823 aa	Predicted RBP	9.01	□□□□□ -0.97
PTCD3-209	ENST00000472044	ATN1	P54259	1190 aa	Predicted RBP	9.01	□□□□□ -0.97
PTCD3-209	ENST00000472044	GABBR2	O75899	941 aa		9	□□□□□ -0.97
PTCD3-209	ENST00000472044	WDR70	Q9NW82	654 aa		9	□□□□□ -0.97
PTCD3-209	ENST00000472044	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	9	□□□□□ -0.97	9e-7	■■□□□ 13.4
PTCD3-209	ENST00000472044	P3H3	Q8IVL6	736 aa		8.99	□□□□□ -0.97
PTCD3-209	ENST00000472044	IER5L	Q5T953	404 aa		8.98	□□□□□ -0.97
PTCD3-209	ENST00000472044	NBR1	Q14596	966 aa		8.97	□□□□□ -0.97
PTCD3-209	ENST00000472044	PDE4A	P27815	886 aa		8.95	□□□□□ -0.98
PTCD3-209	ENST00000472044	IRX5	P78411	483 aa	Predicted RBP	8.95	□□□□□ -0.98
PTCD3-209	ENST00000472044	PDCD7	Q8N8D1	485 aa	Known RBP	8.95	□□□□□ -0.98
PTCD3-209	ENST00000472044	NCKAP5L	Q9HCH0	1330 aa		8.95	□□□□□ -0.98
PTCD3-209	ENST00000472044	CRISPLD2	Q9H0B8	497 aa		8.94	□□□□□ -0.98
PTCD3-209	ENST00000472044	OCEL1	Q9H607	264 aa		8.94	□□□□□ -0.98
PTCD3-209	ENST00000472044	MFSD10	Q14728	455 aa		8.93	□□□□□ -0.98
PTCD3-209	ENST00000472044	KCNV2	Q8TDN2	545 aa		8.92	□□□□□ -0.98
PTCD3-209	ENST00000472044	DPY19L2	Q6NUT2	758 aa		8.91	□□□□□ -0.98
PTCD3-209	ENST00000472044	E2F4	Q16254	413 aa		8.9	□□□□□ -0.98
PTCD3-209	ENST00000472044	DCBLD2	Q96PD2	775 aa		8.9	□□□□□ -0.98
PTCD3-209	ENST00000472044	LARP6	Q9BRS8	491 aa	Known RBP	8.9	□□□□□ -0.98
PTCD3-209	ENST00000472044	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	8.89	□□□□□ -0.99
PTCD3-209	ENST00000472044	MICALL2	Q8IY33	904 aa		8.88	□□□□□ -0.99
PTCD3-209	ENST00000472044	PELP1	Q8IZL8	1130 aa	Known RBP	8.88	□□□□□ -0.99
PTCD3-209	ENST00000472044	ARHGEF1	Q92888	912 aa	Known RBP	8.88	□□□□□ -0.99
PTCD3-209	ENST00000472044	DDX27	Q96GQ7	796 aa	Known RBP	8.87	□□□□□ -0.99
PTCD3-209	ENST00000472044	GPHN	Q9NQX3	736 aa	Predicted RBP	8.87	□□□□□ -0.99
PTCD3-209	ENST00000472044	PLCG2	P16885	1265 aa		8.86	□□□□□ -0.99

Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms