RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 SPOCK2Q92563 424 aa17.24■□□□□ 0.35
CCDC39-202ENST00000471307 CCDC61Q9Y6R9 512 aa17.22■□□□□ 0.35
CCDC39-202ENST00000471307 GABBR2O75899 941 aa17.19■□□□□ 0.34
CCDC39-202ENST00000471307 PHF12Q96QT6 1004 aa17.15■□□□□ 0.34
CCDC39-202ENST00000471307 GSE1Q14687 1217 aa17.14■□□□□ 0.33
CCDC39-202ENST00000471307 DCAF8Q5TAQ9 597 aa17.12■□□□□ 0.33
CCDC39-202ENST00000471307 KIF12Q96FN5 646 aa17.06■□□□□ 0.32
CCDC39-202ENST00000471307 SGIP1Q9BQI5 828 aa17.02■□□□□ 0.32
CCDC39-202ENST00000471307 GALR2O43603 387 aaPredicted RBP17■□□□□ 0.31
CCDC39-202ENST00000471307 MAP3K13O43283 966 aa16.97■□□□□ 0.31
CCDC39-202ENST00000471307 CIZ1Q9ULV3 898 aaPredicted RBP16.97■□□□□ 0.31
CCDC39-202ENST00000471307 MS4A3Q96HJ5 214 aa16.96■□□□□ 0.31
CCDC39-202ENST00000471307 CHRM1P11229 460 aaPredicted RBP16.94■□□□□ 0.3
CCDC39-202ENST00000471307 TRIM41Q8WV44 630 aa16.93■□□□□ 0.3
CCDC39-202ENST00000471307 PYGBP11216 843 aa16.92■□□□□ 0.3
CCDC39-202ENST00000471307 PCDHB13Q9Y5F0 798 aa16.92■□□□□ 0.3
CCDC39-202ENST00000471307 DCBLD2Q96PD2 775 aa16.91■□□□□ 0.3
CCDC39-202ENST00000471307 IFNL1Q8IU54 200 aa16.82■□□□□ 0.28
CCDC39-202ENST00000471307 ZNF467Q7Z7K2 595 aaPredicted RBP16.8■□□□□ 0.28
CCDC39-202ENST00000471307 POTEIP0CG38 1075 aa16.79■□□□□ 0.28
CCDC39-202ENST00000471307 TIE1P35590 1138 aa16.79■□□□□ 0.28
CCDC39-202ENST00000471307 ASTLQ6HA08 431 aaPredicted RBP16.78■□□□□ 0.28
CCDC39-202ENST00000471307 TRPC6Q9Y210 931 aa16.72■□□□□ 0.27
CCDC39-202ENST00000471307 ATMINO43313 823 aaPredicted RBP16.71■□□□□ 0.27
CCDC39-202ENST00000471307 BMP2KQ9NSY1 1161 aaPredicted RBP16.71■□□□□ 0.27
CCDC39-202ENST00000471307 PCDHB8Q9UN66 801 aa16.7■□□□□ 0.26
CCDC39-202ENST00000471307 TTLL13PA6NNM8 815 aa16.66■□□□□ 0.26
CCDC39-202ENST00000471307 PKD2Q13563 968 aa16.65■□□□□ 0.26
CCDC39-202ENST00000471307 ATN1P54259 1190 aaPredicted RBP16.63■□□□□ 0.25
CCDC39-202ENST00000471307 ECM2O94769 699 aaPredicted RBP16.62■□□□□ 0.25
CCDC39-202ENST00000471307 TMEM106CQ9BVX2 250 aa16.62■□□□□ 0.25
CCDC39-202ENST00000471307 PDAP1Q13442 181 aaKnown RBP16.6■□□□□ 0.25
CCDC39-202ENST00000471307 PELP1Q8IZL8 1130 aaKnown RBP16.59■□□□□ 0.25
CCDC39-202ENST00000471307 SLC39A7Q92504 469 aa16.59■□□□□ 0.25
CCDC39-202ENST00000471307 RIOK3O14730 519 aaKnown RBP16.58■□□□□ 0.24
CCDC39-202ENST00000471307 PSEN1P49768 467 aa16.57■□□□□ 0.24
CCDC39-202ENST00000471307 C7P10643 843 aa16.56■□□□□ 0.24
CCDC39-202ENST00000471307 RNF25Q96BH1 459 aaPredicted RBP16.56■□□□□ 0.24
CCDC39-202ENST00000471307 TRIM35Q9UPQ4 493 aa16.55■□□□□ 0.24
CCDC39-202ENST00000471307 TAOK2Q9UL54 1235 aa16.54■□□□□ 0.24
CCDC39-202ENST00000471307 VGFO15240 615 aaPredicted RBP16.51■□□□□ 0.23
CCDC39-202ENST00000471307 IER5LQ5T953 404 aa16.51■□□□□ 0.23
CCDC39-202ENST00000471307 METRNQ9UJH8 293 aa16.5■□□□□ 0.23
CCDC39-202ENST00000471307 RGL2O15211 777 aa16.43■□□□□ 0.22
CCDC39-202ENST00000471307 GOLGA2Q08379 1002 aa16.43■□□□□ 0.22
CCDC39-202ENST00000471307 LHX8Q68G74 356 aa16.39■□□□□ 0.21
CCDC39-202ENST00000471307 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.38■□□□□ 0.21
CCDC39-202ENST00000471307 ZFP91Q96JP5 570 aaPredicted RBP16.38■□□□□ 0.21
CCDC39-202ENST00000471307 MKRN3Q13064 507 aaKnown RBP16.37■□□□□ 0.21
CCDC39-202ENST00000471307 SEC24BO95487 1268 aa16.36■□□□□ 0.21
CCDC39-202ENST00000471307 AMER1Q5JTC6 1135 aaPredicted RBP16.36■□□□□ 0.21
CCDC39-202ENST00000471307 CABP2Q9NPB3 220 aa16.34■□□□□ 0.21
CCDC39-202ENST00000471307 IRX5P78411 483 aaPredicted RBP16.33■□□□□ 0.2
CCDC39-202ENST00000471307 POTEFA5A3E0 1075 aa16.31■□□□□ 0.2
CCDC39-202ENST00000471307 PLCG2P16885 1265 aa16.3■□□□□ 0.2
CCDC39-202ENST00000471307 OCEL1Q9H607 264 aa16.3■□□□□ 0.2
CCDC39-202ENST00000471307 COLQQ9Y215 455 aaPredicted RBP16.29■□□□□ 0.2
CCDC39-202ENST00000471307 BCL11BQ9C0K0 894 aaPredicted RBP16.27■□□□□ 0.2
CCDC39-202ENST00000471307 STK25O00506 426 aa16.26■□□□□ 0.19
CCDC39-202ENST00000471307 POTEB2H3BUK9 544 aa16.25■□□□□ 0.19
CCDC39-202ENST00000471307 ILDR1Q86SU0 546 aaPredicted RBP16.24■□□□□ 0.19
CCDC39-202ENST00000471307 STK24Q9Y6E0 443 aa16.23■□□□□ 0.19
CCDC39-202ENST00000471307 EFCAB3Q8N7B9 438 aa16.22■□□□□ 0.19
CCDC39-202ENST00000471307 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.22■□□□□ 0.19
CCDC39-202ENST00000471307 SOX12O15370 315 aa16.21■□□□□ 0.19
CCDC39-202ENST00000471307 PDCD7Q8N8D1 485 aaKnown RBP16.2■□□□□ 0.18
CCDC39-202ENST00000471307 MAMSTRQ6ZN01 415 aa16.18■□□□□ 0.18
CCDC39-202ENST00000471307 HS6ST3Q8IZP7 471 aa16.17■□□□□ 0.18
CCDC39-202ENST00000471307 RTN4Q9NQC3 1192 aaKnown RBP16.17■□□□□ 0.18
CCDC39-202ENST00000471307 POTEJP0CG39 1038 aa16.13■□□□□ 0.17
CCDC39-202ENST00000471307 SCUBE2Q9NQ36 999 aa16.12■□□□□ 0.17
CCDC39-202ENST00000471307 L3MBTL3Q96JM7 780 aaPredicted RBP16.1■□□□□ 0.17
CCDC39-202ENST00000471307 CHGAP10645 457 aaKnown RBP16.09■□□□□ 0.17
CCDC39-202ENST00000471307 OTUD5Q96G74 571 aa16.09■□□□□ 0.17
CCDC39-202ENST00000471307 NLRP6P59044 892 aa16.07■□□□□ 0.16
CCDC39-202ENST00000471307 DNAJC5Q9H3Z4 198 aa16.07■□□□□ 0.16
CCDC39-202ENST00000471307 PHF8Q9UPP1 1060 aa16.04■□□□□ 0.16
CCDC39-202ENST00000471307 DCAF8L2P0C7V8 631 aa16.03■□□□□ 0.16
CCDC39-202ENST00000471307 MFRPQ9BY79 579 aa16.02■□□□□ 0.16
CCDC39-202ENST00000471307 FBXO22Q8NEZ5 403 aa16.01■□□□□ 0.15
CCDC39-202ENST00000471307 DPY19L2Q6NUT2 758 aa15.99■□□□□ 0.15
CCDC39-202ENST00000471307 MS4A4AQ96JQ5 239 aa15.99■□□□□ 0.15
CCDC39-202ENST00000471307 G3V3G9 751 aa15.98■□□□□ 0.15
CCDC39-202ENST00000471307 BOLA1Q9Y3E2 137 aa15.98■□□□□ 0.15
CCDC39-202ENST00000471307 C3orf67Q6ZVT6 689 aa15.94■□□□□ 0.14
CCDC39-202ENST00000471307 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.94■□□□□ 0.14
CCDC39-202ENST00000471307 TMEM121BQ9BXQ6 578 aaPredicted RBP15.92■□□□□ 0.14
CCDC39-202ENST00000471307 RYDENQ9NUL5 291 aaKnown RBP15.92■□□□□ 0.14
CCDC39-202ENST00000471307 NKX1-1Q15270 411 aaPredicted RBP15.86■□□□□ 0.13
CCDC39-202ENST00000471307 MICALL2Q8IY33 904 aa15.86■□□□□ 0.13
CCDC39-202ENST00000471307 SLAIN1Q8ND83 568 aa15.85■□□□□ 0.13
CCDC39-202ENST00000471307 BBXQ8WY36 941 aaPredicted RBP15.77■□□□□ 0.12
CCDC39-202ENST00000471307 PPP1R37O75864 691 aa15.73■□□□□ 0.11
CCDC39-202ENST00000471307 GTPBP6O43824 516 aaPredicted RBP15.71■□□□□ 0.11
CCDC39-202ENST00000471307 SNPHO15079 494 aa15.7■□□□□ 0.1
CCDC39-202ENST00000471307 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.65■□□□□ 0.1
CCDC39-202ENST00000471307 TMEM92Q6UXU6 159 aa15.63■□□□□ 0.09
CCDC39-202ENST00000471307 KIF3CO14782 793 aa15.57■□□□□ 0.08
CCDC39-202ENST00000471307 SPRYD3Q8NCJ5 442 aa15.55■□□□□ 0.08
CCDC39-202ENST00000471307 TMC2Q8TDI7 906 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms