RNA–Protein interactions for RNA: ENST00000470687.1

UBXN4-206, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-206ENST00000470687 METRNQ9UJH8 293 aa9.28□□□□□ -0.92
UBXN4-206ENST00000470687 SLC39A7Q92504 469 aa9.25□□□□□ -0.93
UBXN4-206ENST00000470687 POTEMA6NI47 508 aa9.24□□□□□ -0.93
UBXN4-206ENST00000470687 C7P10643 843 aa9.24□□□□□ -0.93
UBXN4-206ENST00000470687 TSPYL2Q9H2G4 693 aaPredicted RBP9.24□□□□□ -0.93
UBXN4-206ENST00000470687 POTEJP0CG39 1038 aa9.23□□□□□ -0.93
UBXN4-206ENST00000470687 CCDC61Q9Y6R9 512 aa9.23□□□□□ -0.93
UBXN4-206ENST00000470687 POTEGQ6S5H5 508 aa9.21□□□□□ -0.94
UBXN4-206ENST00000470687 ATN1P54259 1190 aaPredicted RBP9.18□□□□□ -0.94
UBXN4-206ENST00000470687 KIF12Q96FN5 646 aa9.18□□□□□ -0.94
UBXN4-206ENST00000470687 MAMSTRQ6ZN01 415 aa9.17□□□□□ -0.94
UBXN4-206ENST00000470687 BMP2KQ9NSY1 1161 aaPredicted RBP9.14□□□□□ -0.95
UBXN4-206ENST00000470687 TRPC6Q9Y210 931 aa9.13□□□□□ -0.95
UBXN4-206ENST00000470687 POTEFA5A3E0 1075 aa9.11□□□□□ -0.95
UBXN4-206ENST00000470687 MAP3K13O43283 966 aa9.11□□□□□ -0.95
UBXN4-206ENST00000470687 LCE2DQ5TA82 110 aaPredicted RBP9.1□□□□□ -0.95
UBXN4-206ENST00000470687 RASEFQ8IZ41 740 aa9.1□□□□□ -0.95
UBXN4-206ENST00000470687 SCUBE2Q9NQ36 999 aa9.1□□□□□ -0.95
UBXN4-206ENST00000470687 PLEKHG5O94827 1062 aa9.09□□□□□ -0.95
UBXN4-206ENST00000470687 TIE1P35590 1138 aa9.09□□□□□ -0.95
UBXN4-206ENST00000470687 PCDH10Q9P2E7 1040 aa9.09□□□□□ -0.95
UBXN4-206ENST00000470687 MIER1Q8N108 512 aa9.08□□□□□ -0.96
UBXN4-206ENST00000470687 TTLL13PA6NNM8 815 aa9.04□□□□□ -0.96
UBXN4-206ENST00000470687 FAM163AQ96GL9 167 aaPredicted RBP9.04□□□□□ -0.96
UBXN4-206ENST00000470687 COLQQ9Y215 455 aaPredicted RBP9.02□□□□□ -0.97
UBXN4-206ENST00000470687 SEC24BO95487 1268 aa8.99□□□□□ -0.97
UBXN4-206ENST00000470687 PLCD3Q8N3E9 789 aa8.99□□□□□ -0.97
UBXN4-206ENST00000470687 SGIP1Q9BQI5 828 aa8.99□□□□□ -0.97
UBXN4-206ENST00000470687 IER5LQ5T953 404 aa8.98□□□□□ -0.97
UBXN4-206ENST00000470687 TRIM35Q9UPQ4 493 aa8.98□□□□□ -0.97
UBXN4-206ENST00000470687 PCDHB13Q9Y5F0 798 aa8.98□□□□□ -0.97
UBXN4-206ENST00000470687 NUBP1P53384 320 aa8.97□□□□□ -0.97
UBXN4-206ENST00000470687 ZBTB47Q9UFB7 747 aaPredicted RBP8.94□□□□□ -0.98
UBXN4-206ENST00000470687 IFNL1Q8IU54 200 aa8.93□□□□□ -0.98
UBXN4-206ENST00000470687 FAM212AQ96EL1 285 aa8.9□□□□□ -0.98
UBXN4-206ENST00000470687 TMEM106CQ9BVX2 250 aa8.89□□□□□ -0.99
UBXN4-206ENST00000470687 SLAIN1Q8ND83 568 aa8.87□□□□□ -0.99
UBXN4-206ENST00000470687 CDAN1Q8IWY9 1227 aa8.86□□□□□ -0.99
UBXN4-206ENST00000470687 PLCG2P16885 1265 aa8.85□□□□□ -0.99
UBXN4-206ENST00000470687 IRX5P78411 483 aaPredicted RBP8.85□□□□□ -0.99
UBXN4-206ENST00000470687 ST18O60284 1047 aa8.83□□□□□ -1
UBXN4-206ENST00000470687 FKBP8Q14318 412 aa8.8□□□□□ -1
UBXN4-206ENST00000470687 PYGBP11216 843 aa8.78□□□□□ -1
UBXN4-206ENST00000470687 OCEL1Q9H607 264 aa8.78□□□□□ -1
UBXN4-206ENST00000470687 DCAF8Q5TAQ9 597 aa8.77□□□□□ -1.01
UBXN4-206ENST00000470687 PCDHB8Q9UN66 801 aa8.75□□□□□ -1.01
UBXN4-206ENST00000470687 TMEM121BQ9BXQ6 578 aaPredicted RBP8.73□□□□□ -1.01
UBXN4-206ENST00000470687 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.72□□□□□ -1.01
UBXN4-206ENST00000470687 SNPHO15079 494 aa8.7□□□□□ -1.02
UBXN4-206ENST00000470687 PDCD7Q8N8D1 485 aaKnown RBP8.68□□□□□ -1.02
UBXN4-206ENST00000470687 FBXO3Q9UK99 471 aa8.68□□□□□ -1.02
UBXN4-206ENST00000470687 MMRN1Q13201 1228 aa8.66□□□□□ -1.02
UBXN4-206ENST00000470687 SPNS2Q8IVW8 549 aa8.66□□□□□ -1.02
UBXN4-206ENST00000470687 MARVELD3Q96A59 401 aa8.66□□□□□ -1.02
UBXN4-206ENST00000470687 ZNF467Q7Z7K2 595 aaPredicted RBP8.65□□□□□ -1.02
UBXN4-206ENST00000470687 GSE1Q14687 1217 aa8.64□□□□□ -1.03
UBXN4-206ENST00000470687 C3orf67Q6ZVT6 689 aa8.63□□□□□ -1.03
UBXN4-206ENST00000470687 GOLGA2Q08379 1002 aa8.62□□□□□ -1.03
UBXN4-206ENST00000470687 MKRN3Q13064 507 aaKnown RBP8.62□□□□□ -1.03
UBXN4-206ENST00000470687 L3MBTL3Q96JM7 780 aaPredicted RBP8.61□□□□□ -1.03
UBXN4-206ENST00000470687 CHRM1P11229 460 aaPredicted RBP8.6□□□□□ -1.03
UBXN4-206ENST00000470687 VASPP50552 380 aaPredicted RBP8.6□□□□□ -1.03
UBXN4-206ENST00000470687 KLHL34Q8N239 644 aa8.6□□□□□ -1.03
UBXN4-206ENST00000470687 PSEN1P49768 467 aa8.59□□□□□ -1.03
UBXN4-206ENST00000470687 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.59□□□□□ -1.032e-8■□□□□ 11.1
UBXN4-206ENST00000470687 EMP3P54852 163 aa8.58□□□□□ -1.04
UBXN4-206ENST00000470687 ILDR1Q86SU0 546 aaPredicted RBP8.56□□□□□ -1.04
UBXN4-206ENST00000470687 POTEB3A0JP26 581 aa8.54□□□□□ -1.04
UBXN4-206ENST00000470687 POTEBQ6S5H4 581 aa8.54□□□□□ -1.04
UBXN4-206ENST00000470687 PDAP1Q13442 181 aaKnown RBP8.53□□□□□ -1.04
UBXN4-206ENST00000470687 HS3ST6Q96QI5 342 aa8.53□□□□□ -1.04
UBXN4-206ENST00000470687 KRTAP3-3Q9BYR6 98 aa8.53□□□□□ -1.04
UBXN4-206ENST00000470687 KRTAP3-2Q9BYR7 98 aa8.53□□□□□ -1.04
UBXN4-206ENST00000470687 FAM205CA6NFA0 338 aa8.51□□□□□ -1.05
UBXN4-206ENST00000470687 DPY19L2Q6NUT2 758 aa8.51□□□□□ -1.05
UBXN4-206ENST00000470687 CABP2Q9NPB3 220 aa8.48□□□□□ -1.05
UBXN4-206ENST00000470687 BOLA1Q9Y3E2 137 aa8.47□□□□□ -1.05
UBXN4-206ENST00000470687 HOXB3P14651 431 aaPredicted RBP8.46□□□□□ -1.06
UBXN4-206ENST00000470687 G3V3G9 751 aa8.45□□□□□ -1.06
UBXN4-206ENST00000470687 IFNLR1Q8IU57 520 aaPredicted RBP8.44□□□□□ -1.06
UBXN4-206ENST00000470687 SPOCK2Q92563 424 aa8.44□□□□□ -1.06
UBXN4-206ENST00000470687 CIZ1Q9ULV3 898 aaPredicted RBP8.44□□□□□ -1.06
UBXN4-206ENST00000470687 HOXB1P14653 301 aaPredicted RBP8.41□□□□□ -1.06
UBXN4-206ENST00000470687 DOK7Q18PE1 504 aa8.39□□□□□ -1.07
UBXN4-206ENST00000470687 ZNF710Q8N1W2 664 aa8.39□□□□□ -1.07
UBXN4-206ENST00000470687 ERBB3P21860 1342 aa8.36□□□□□ -1.07
UBXN4-206ENST00000470687 EFCAB3Q8N7B9 438 aa8.35□□□□□ -1.07
UBXN4-206ENST00000470687 RIMBP2O15034 1052 aa8.33□□□□□ -1.08
UBXN4-206ENST00000470687 TMEM92Q6UXU6 159 aa8.32□□□□□ -1.08
UBXN4-206ENST00000470687 VARS2Q5ST30 1063 aaKnown RBP8.31□□□□□ -1.08
UBXN4-206ENST00000470687 MICALL2Q8IY33 904 aa8.31□□□□□ -1.08
UBXN4-206ENST00000470687 TRIM41Q8WV44 630 aa8.31□□□□□ -1.08
UBXN4-206ENST00000470687 RNF166Q96A37 237 aaPredicted RBP8.3□□□□□ -1.08
UBXN4-206ENST00000470687 ZSWIM6Q9HCJ5 1215 aa8.29□□□□□ -1.08
UBXN4-206ENST00000470687 GPR153Q6NV75 609 aa8.26□□□□□ -1.09
UBXN4-206ENST00000470687 ZNF687Q8N1G0 1237 aa8.26□□□□□ -1.09
UBXN4-206ENST00000470687 MS4A4AQ96JQ5 239 aa8.26□□□□□ -1.09
UBXN4-206ENST00000470687 SOX12O15370 315 aa8.25□□□□□ -1.09
UBXN4-206ENST00000470687 MYT1LQ9UL68 1186 aa8.25□□□□□ -1.09
UBXN4-206ENST00000470687 RIOK3O14730 519 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms