RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 CCDC61Q9Y6R9 512 aa11.92□□□□□ -0.5
SYNE1-219ENST00000469439 DCBLD2Q96PD2 775 aa11.89□□□□□ -0.51
SYNE1-219ENST00000469439 NUBP1P53384 320 aa11.87□□□□□ -0.51
SYNE1-219ENST00000469439 LHX8Q68G74 356 aa11.87□□□□□ -0.51
SYNE1-219ENST00000469439 MS4A3Q96HJ5 214 aa11.86□□□□□ -0.51
SYNE1-219ENST00000469439 VASPP50552 380 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-219ENST00000469439 KIF12Q96FN5 646 aa11.82□□□□□ -0.52
SYNE1-219ENST00000469439 FAM212AQ96EL1 285 aa11.77□□□□□ -0.53
SYNE1-219ENST00000469439 MAP3K13O43283 966 aa11.75□□□□□ -0.53
SYNE1-219ENST00000469439 ASTLQ6HA08 431 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-219ENST00000469439 ATMINO43313 823 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-219ENST00000469439 PELP1Q8IZL8 1130 aaKnown RBP11.7□□□□□ -0.54
SYNE1-219ENST00000469439 KLHL34Q8N239 644 aa11.69□□□□□ -0.54
SYNE1-219ENST00000469439 SGIP1Q9BQI5 828 aa11.69□□□□□ -0.54
SYNE1-219ENST00000469439 TRPC6Q9Y210 931 aa11.69□□□□□ -0.54
SYNE1-219ENST00000469439 TIE1P35590 1138 aa11.65□□□□□ -0.54
SYNE1-219ENST00000469439 DCAF8Q5TAQ9 597 aa11.65□□□□□ -0.54
SYNE1-219ENST00000469439 BMP2KQ9NSY1 1161 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-219ENST00000469439 PCDHB13Q9Y5F0 798 aa11.65□□□□□ -0.54
SYNE1-219ENST00000469439 IFNLR1Q8IU57 520 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-219ENST00000469439 ATN1P54259 1190 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-219ENST00000469439 IFNL1Q8IU54 200 aa11.61□□□□□ -0.55
SYNE1-219ENST00000469439 SLC39A7Q92504 469 aa11.61□□□□□ -0.55
SYNE1-219ENST00000469439 METRNQ9UJH8 293 aa11.61□□□□□ -0.55
SYNE1-219ENST00000469439 PYGBP11216 843 aa11.59□□□□□ -0.55
SYNE1-219ENST00000469439 GSE1Q14687 1217 aa11.59□□□□□ -0.55
SYNE1-219ENST00000469439 TTLL13PA6NNM8 815 aa11.58□□□□□ -0.56
SYNE1-219ENST00000469439 C7P10643 843 aa11.58□□□□□ -0.56
SYNE1-219ENST00000469439 POTEB2H3BUK9 544 aa11.57□□□□□ -0.56
SYNE1-219ENST00000469439 SPOCK2Q92563 424 aa11.56□□□□□ -0.56
SYNE1-219ENST00000469439 CCDC180Q9P1Z9 1646 aa11.53□□□□□ -0.56
SYNE1-219ENST00000469439 TRIM35Q9UPQ4 493 aa11.5□□□□□ -0.57
SYNE1-219ENST00000469439 TMEM106CQ9BVX2 250 aa11.49□□□□□ -0.57
SYNE1-219ENST00000469439 POTEFA5A3E0 1075 aa11.48□□□□□ -0.57
SYNE1-219ENST00000469439 CHRM1P11229 460 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-219ENST00000469439 OTUD5Q96G74 571 aa11.48□□□□□ -0.57
SYNE1-219ENST00000469439 PCDHB8Q9UN66 801 aa11.48□□□□□ -0.57
SYNE1-219ENST00000469439 POTEJP0CG39 1038 aa11.45□□□□□ -0.58
SYNE1-219ENST00000469439 IER5LQ5T953 404 aa11.45□□□□□ -0.58
SYNE1-219ENST00000469439 ZNF467Q7Z7K2 595 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-219ENST00000469439 CIZ1Q9ULV3 898 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-219ENST00000469439 COLQQ9Y215 455 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-219ENST00000469439 SEC24BO95487 1268 aa11.39□□□□□ -0.59
SYNE1-219ENST00000469439 MAMSTRQ6ZN01 415 aa11.36□□□□□ -0.59
SYNE1-219ENST00000469439 IRX5P78411 483 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-219ENST00000469439 TRIM41Q8WV44 630 aa11.34□□□□□ -0.59
SYNE1-219ENST00000469439 PSEN1P49768 467 aa11.32□□□□□ -0.6
SYNE1-219ENST00000469439 SCUBE2Q9NQ36 999 aa11.32□□□□□ -0.6
SYNE1-219ENST00000469439 PLCG2P16885 1265 aa11.3□□□□□ -0.6
SYNE1-219ENST00000469439 PDAP1Q13442 181 aaKnown RBP11.3□□□□□ -0.6
SYNE1-219ENST00000469439 OCEL1Q9H607 264 aa11.27□□□□□ -0.61
SYNE1-219ENST00000469439 GOLGA2Q08379 1002 aa11.24□□□□□ -0.61
SYNE1-219ENST00000469439 MKRN3Q13064 507 aaKnown RBP11.23□□□□□ -0.61
SYNE1-219ENST00000469439 PDCD7Q8N8D1 485 aaKnown RBP11.22□□□□□ -0.61
SYNE1-219ENST00000469439 RNF25Q96BH1 459 aaPredicted RBP11.21□□□□□ -0.61
SYNE1-219ENST00000469439 CABP2Q9NPB3 220 aa11.19□□□□□ -0.62
SYNE1-219ENST00000469439 ILDR1Q86SU0 546 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-219ENST00000469439 POTEMA6NI47 508 aa11.17□□□□□ -0.62
SYNE1-219ENST00000469439 RIOK3O14730 519 aaKnown RBP11.17□□□□□ -0.62
SYNE1-219ENST00000469439 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.16□□□□□ -0.62
SYNE1-219ENST00000469439 POTEGQ6S5H5 508 aa11.15□□□□□ -0.62
SYNE1-219ENST00000469439 PLSCR2Q9NRY7 297 aa11.15□□□□□ -0.62
SYNE1-219ENST00000469439 VGFO15240 615 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-219ENST00000469439 SLAIN1Q8ND83 568 aa11.12□□□□□ -0.63
SYNE1-219ENST00000469439 LCE2DQ5TA82 110 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-219ENST00000469439 FAM163AQ96GL9 167 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-219ENST00000469439 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-219ENST00000469439 ZFP91Q96JP5 570 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-219ENST00000469439 L3MBTL3Q96JM7 780 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-219ENST00000469439 EFCAB3Q8N7B9 438 aa11.08□□□□□ -0.64
SYNE1-219ENST00000469439 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.08□□□□□ -0.64
SYNE1-219ENST00000469439 ECM2O94769 699 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-219ENST00000469439 PKD2Q13563 968 aa11.07□□□□□ -0.64
SYNE1-219ENST00000469439 DPY19L2Q6NUT2 758 aa11.06□□□□□ -0.64
SYNE1-219ENST00000469439 C3orf67Q6ZVT6 689 aa11.04□□□□□ -0.64
SYNE1-219ENST00000469439 TAOK2Q9UL54 1235 aa11.02□□□□□ -0.65
SYNE1-219ENST00000469439 BOLA1Q9Y3E2 137 aa11□□□□□ -0.65
SYNE1-219ENST00000469439 RGL2O15211 777 aa10.99□□□□□ -0.65
SYNE1-219ENST00000469439 SOX12O15370 315 aa10.99□□□□□ -0.65
SYNE1-219ENST00000469439 BCL11BQ9C0K0 894 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-219ENST00000469439 ABCC9O60706 1549 aa10.97□□□□□ -0.65
SYNE1-219ENST00000469439 ZCCHC6Q5VYS8 1495 aaKnown RBP10.96□□□□□ -0.65
SYNE1-219ENST00000469439 G3V3G9 751 aa10.96□□□□□ -0.65
SYNE1-219ENST00000469439 TMEM121BQ9BXQ6 578 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-219ENST00000469439 DCAF1Q9Y4B6 1507 aa10.95□□□□□ -0.66
SYNE1-219ENST00000469439 ST18O60284 1047 aa10.95□□□□□ -0.66
SYNE1-219ENST00000469439 MS4A4AQ96JQ5 239 aa10.95□□□□□ -0.66
SYNE1-219ENST00000469439 PHF8Q9UPP1 1060 aa10.95□□□□□ -0.66
SYNE1-219ENST00000469439 STK24Q9Y6E0 443 aa10.95□□□□□ -0.66
SYNE1-219ENST00000469439 DCAF8L2P0C7V8 631 aa10.94□□□□□ -0.66
SYNE1-219ENST00000469439 PCDH10Q9P2E7 1040 aa10.94□□□□□ -0.66
SYNE1-219ENST00000469439 STK25O00506 426 aa10.93□□□□□ -0.66
SYNE1-219ENST00000469439 SNPHO15079 494 aa10.93□□□□□ -0.66
SYNE1-219ENST00000469439 MYO15BQ96JP2 1530 aa10.93□□□□□ -0.66
SYNE1-219ENST00000469439 MICALL2Q8IY33 904 aa10.9□□□□□ -0.66
SYNE1-219ENST00000469439 NLRP6P59044 892 aa10.89□□□□□ -0.67
SYNE1-219ENST00000469439 FBXO22Q8NEZ5 403 aa10.89□□□□□ -0.67
SYNE1-219ENST00000469439 MFRPQ9BY79 579 aa10.88□□□□□ -0.67
SYNE1-219ENST00000469439 NACADO15069 1562 aa10.86□□□□□ -0.67
SYNE1-219ENST00000469439 TMEM92Q6UXU6 159 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms