RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 ZNF579Q8NAF0 562 aaKnown RBP15.68■□□□□ 0.1
SYNE1-218ENST00000468937 CLCN6P51797 869 aa15.67■□□□□ 0.1
SYNE1-218ENST00000468937 GSE1Q14687 1217 aa15.67■□□□□ 0.1
SYNE1-218ENST00000468937 CCDC61Q9Y6R9 512 aa15.62■□□□□ 0.09
SYNE1-218ENST00000468937 CIZ1Q9ULV3 898 aaPredicted RBP15.58■□□□□ 0.08
SYNE1-218ENST00000468937 PHF12Q96QT6 1004 aa15.57■□□□□ 0.08
SYNE1-218ENST00000468937 GABBR2O75899 941 aa15.53■□□□□ 0.08
SYNE1-218ENST00000468937 KIF12Q96FN5 646 aa15.49■□□□□ 0.07
SYNE1-218ENST00000468937 TRIM41Q8WV44 630 aa15.48■□□□□ 0.07
SYNE1-218ENST00000468937 SGIP1Q9BQI5 828 aa15.46■□□□□ 0.07
SYNE1-218ENST00000468937 PYGBP11216 843 aa15.45■□□□□ 0.06
SYNE1-218ENST00000468937 CHRM1P11229 460 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-218ENST00000468937 MAP3K13O43283 966 aa15.43■□□□□ 0.06
SYNE1-218ENST00000468937 PCDHB13Q9Y5F0 798 aa15.41■□□□□ 0.06
SYNE1-218ENST00000468937 GALR2O43603 387 aaPredicted RBP15.39■□□□□ 0.05
SYNE1-218ENST00000468937 MS4A3Q96HJ5 214 aa15.39■□□□□ 0.05
SYNE1-218ENST00000468937 ZNF467Q7Z7K2 595 aaPredicted RBP15.33■□□□□ 0.04
SYNE1-218ENST00000468937 DCBLD2Q96PD2 775 aa15.33■□□□□ 0.04
SYNE1-218ENST00000468937 IFNL1Q8IU54 200 aa15.3■□□□□ 0.04
SYNE1-218ENST00000468937 PKD2Q13563 968 aa15.29■□□□□ 0.04
SYNE1-218ENST00000468937 ECM2O94769 699 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-218ENST00000468937 PCDHB8Q9UN66 801 aa15.24■□□□□ 0.03
SYNE1-218ENST00000468937 TIE1P35590 1138 aa15.23■□□□□ 0.03
SYNE1-218ENST00000468937 AMER1Q5JTC6 1135 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-218ENST00000468937 RIOK3O14730 519 aaKnown RBP15.17■□□□□ 0.02
SYNE1-218ENST00000468937 TAOK2Q9UL54 1235 aa15.17■□□□□ 0.02
SYNE1-218ENST00000468937 TRPC6Q9Y210 931 aa15.17■□□□□ 0.02
SYNE1-218ENST00000468937 ASTLQ6HA08 431 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-218ENST00000468937 POTEIP0CG38 1075 aa15.15■□□□□ 0.02
SYNE1-218ENST00000468937 PDAP1Q13442 181 aaKnown RBP15.15■□□□□ 0.02
SYNE1-218ENST00000468937 BMP2KQ9NSY1 1161 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-218ENST00000468937 ATMINO43313 823 aaPredicted RBP15.14■□□□□ 0.01
SYNE1-218ENST00000468937 TMEM106CQ9BVX2 250 aa15.13■□□□□ 0.01
SYNE1-218ENST00000468937 TTLL13PA6NNM8 815 aa15.12■□□□□ 0.01
SYNE1-218ENST00000468937 PSEN1P49768 467 aa15.12■□□□□ 0.01
SYNE1-218ENST00000468937 RNF25Q96BH1 459 aaPredicted RBP15.11■□□□□ 0.01
SYNE1-218ENST00000468937 VGFO15240 615 aaPredicted RBP15.1■□□□□ 0.01
SYNE1-218ENST00000468937 RGL2O15211 777 aa15.08■□□□□ 0
SYNE1-218ENST00000468937 ATN1P54259 1190 aaPredicted RBP15.08■□□□□ 0
SYNE1-218ENST00000468937 SLC39A7Q92504 469 aa15.03■□□□□ -0
SYNE1-218ENST00000468937 TRIM35Q9UPQ4 493 aa15.03■□□□□ -0
SYNE1-218ENST00000468937 RTN4Q9NQC3 1192 aaKnown RBP15.02■□□□□ -0
SYNE1-218ENST00000468937 GOLGA2Q08379 1002 aa15.01□□□□□ -0.01
SYNE1-218ENST00000468937 PELP1Q8IZL8 1130 aaKnown RBP15.01□□□□□ -0.01
SYNE1-218ENST00000468937 C7P10643 843 aa14.99□□□□□ -0.01
SYNE1-218ENST00000468937 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-218ENST00000468937 ZFP91Q96JP5 570 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-218ENST00000468937 IER5LQ5T953 404 aa14.97□□□□□ -0.01
SYNE1-218ENST00000468937 MKRN3Q13064 507 aaKnown RBP14.94□□□□□ -0.02
SYNE1-218ENST00000468937 METRNQ9UJH8 293 aa14.94□□□□□ -0.02
SYNE1-218ENST00000468937 CABP2Q9NPB3 220 aa14.93□□□□□ -0.02
SYNE1-218ENST00000468937 STK25O00506 426 aa14.91□□□□□ -0.02
SYNE1-218ENST00000468937 SEC24BO95487 1268 aa14.89□□□□□ -0.03
SYNE1-218ENST00000468937 BCL11BQ9C0K0 894 aaPredicted RBP14.89□□□□□ -0.03
SYNE1-218ENST00000468937 STK24Q9Y6E0 443 aa14.89□□□□□ -0.03
SYNE1-218ENST00000468937 DCAF8L2P0C7V8 631 aa14.88□□□□□ -0.03
SYNE1-218ENST00000468937 PLCG2P16885 1265 aa14.83□□□□□ -0.04
SYNE1-218ENST00000468937 CHGAP10645 457 aaKnown RBP14.81□□□□□ -0.04
SYNE1-218ENST00000468937 HS6ST3Q8IZP7 471 aa14.81□□□□□ -0.04
SYNE1-218ENST00000468937 EFCAB3Q8N7B9 438 aa14.81□□□□□ -0.04
SYNE1-218ENST00000468937 OCEL1Q9H607 264 aa14.81□□□□□ -0.04
SYNE1-218ENST00000468937 IRX5P78411 483 aaPredicted RBP14.8□□□□□ -0.04
SYNE1-218ENST00000468937 SOX12O15370 315 aa14.79□□□□□ -0.04
SYNE1-218ENST00000468937 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.79□□□□□ -0.04
SYNE1-218ENST00000468937 COLQQ9Y215 455 aaPredicted RBP14.77□□□□□ -0.05
SYNE1-218ENST00000468937 LHX8Q68G74 356 aa14.76□□□□□ -0.05
SYNE1-218ENST00000468937 POTEFA5A3E0 1075 aa14.74□□□□□ -0.05
SYNE1-218ENST00000468937 ILDR1Q86SU0 546 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-218ENST00000468937 NLRP6P59044 892 aa14.69□□□□□ -0.06
SYNE1-218ENST00000468937 PDCD7Q8N8D1 485 aaKnown RBP14.68□□□□□ -0.06
SYNE1-218ENST00000468937 DNAJC5Q9H3Z4 198 aa14.67□□□□□ -0.06
SYNE1-218ENST00000468937 POTEB2H3BUK9 544 aa14.65□□□□□ -0.06
SYNE1-218ENST00000468937 MAMSTRQ6ZN01 415 aa14.65□□□□□ -0.06
SYNE1-218ENST00000468937 L3MBTL3Q96JM7 780 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-218ENST00000468937 PHF8Q9UPP1 1060 aa14.65□□□□□ -0.06
SYNE1-218ENST00000468937 MFRPQ9BY79 579 aa14.62□□□□□ -0.07
SYNE1-218ENST00000468937 G3V3G9 751 aa14.61□□□□□ -0.07
SYNE1-218ENST00000468937 RYDENQ9NUL5 291 aaKnown RBP14.6□□□□□ -0.07
SYNE1-218ENST00000468937 FBXO22Q8NEZ5 403 aa14.59□□□□□ -0.07
SYNE1-218ENST00000468937 SCUBE2Q9NQ36 999 aa14.59□□□□□ -0.07
SYNE1-218ENST00000468937 DPY19L2Q6NUT2 758 aa14.57□□□□□ -0.08
SYNE1-218ENST00000468937 MS4A4AQ96JQ5 239 aa14.56□□□□□ -0.08
SYNE1-218ENST00000468937 POTEJP0CG39 1038 aa14.55□□□□□ -0.08
SYNE1-218ENST00000468937 BBXQ8WY36 941 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-218ENST00000468937 BOLA1Q9Y3E2 137 aa14.54□□□□□ -0.08
SYNE1-218ENST00000468937 NKX1-1Q15270 411 aaPredicted RBP14.53□□□□□ -0.08
SYNE1-218ENST00000468937 C3orf67Q6ZVT6 689 aa14.5□□□□□ -0.09
SYNE1-218ENST00000468937 OTUD5Q96G74 571 aa14.49□□□□□ -0.09
SYNE1-218ENST00000468937 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.49□□□□□ -0.09
SYNE1-218ENST00000468937 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-218ENST00000468937 TMEM121BQ9BXQ6 578 aaPredicted RBP14.46□□□□□ -0.09
SYNE1-218ENST00000468937 MICALL2Q8IY33 904 aa14.44□□□□□ -0.1
SYNE1-218ENST00000468937 GTPBP6O43824 516 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-218ENST00000468937 SLAIN1Q8ND83 568 aa14.39□□□□□ -0.11
SYNE1-218ENST00000468937 PPP1R37O75864 691 aa14.38□□□□□ -0.11
SYNE1-218ENST00000468937 SPRYD3Q8NCJ5 442 aa14.36□□□□□ -0.11
SYNE1-218ENST00000468937 PAXIP1Q6ZW49 1069 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-218ENST00000468937 CFAP44Q96MT7 982 aa14.27□□□□□ -0.13
SYNE1-218ENST00000468937 SNPHO15079 494 aa14.24□□□□□ -0.13
SYNE1-218ENST00000468937 TMC2Q8TDI7 906 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms