RNA–Protein interactions for RNA: ENST00000468723.1

GPNMB-207, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 808 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-207ENST00000468723 PHF12Q96QT6 1004 aa11.55□□□□□ -0.56
GPNMB-207ENST00000468723 CIZ1Q9ULV3 898 aaPredicted RBP11.54□□□□□ -0.56
GPNMB-207ENST00000468723 CCDC61Q9Y6R9 512 aa11.53□□□□□ -0.56
GPNMB-207ENST00000468723 ZNF579Q8NAF0 562 aaKnown RBP11.52□□□□□ -0.57
GPNMB-207ENST00000468723 GSE1Q14687 1217 aa11.5□□□□□ -0.57
GPNMB-207ENST00000468723 GABBR2O75899 941 aa11.48□□□□□ -0.57
GPNMB-207ENST00000468723 PYGBP11216 843 aa11.47□□□□□ -0.57
GPNMB-207ENST00000468723 KIF12Q96FN5 646 aa11.44□□□□□ -0.58
GPNMB-207ENST00000468723 MAP3K13O43283 966 aa11.42□□□□□ -0.58
GPNMB-207ENST00000468723 GALR2O43603 387 aaPredicted RBP11.41□□□□□ -0.58
GPNMB-207ENST00000468723 MS4A3Q96HJ5 214 aa11.4□□□□□ -0.58
GPNMB-207ENST00000468723 PCDHB13Q9Y5F0 798 aa11.38□□□□□ -0.59
GPNMB-207ENST00000468723 CLCN6P51797 869 aa11.36□□□□□ -0.59
GPNMB-207ENST00000468723 PKD2Q13563 968 aa11.34□□□□□ -0.59
GPNMB-207ENST00000468723 IFNL1Q8IU54 200 aa11.33□□□□□ -0.6
GPNMB-207ENST00000468723 CHRM1P11229 460 aaPredicted RBP11.32□□□□□ -0.6
GPNMB-207ENST00000468723 PCDHB8Q9UN66 801 aa11.32□□□□□ -0.6
GPNMB-207ENST00000468723 ECM2O94769 699 aaPredicted RBP11.31□□□□□ -0.6
GPNMB-207ENST00000468723 TRIM41Q8WV44 630 aa11.3□□□□□ -0.6
GPNMB-207ENST00000468723 SGIP1Q9BQI5 828 aa11.3□□□□□ -0.6
GPNMB-207ENST00000468723 TRPC6Q9Y210 931 aa11.3□□□□□ -0.6
GPNMB-207ENST00000468723 DCBLD2Q96PD2 775 aa11.28□□□□□ -0.6
GPNMB-207ENST00000468723 POTEIP0CG38 1075 aa11.24□□□□□ -0.61
GPNMB-207ENST00000468723 ZNF467Q7Z7K2 595 aaPredicted RBP11.24□□□□□ -0.61
GPNMB-207ENST00000468723 RNF25Q96BH1 459 aaPredicted RBP11.23□□□□□ -0.61
GPNMB-207ENST00000468723 RGL2O15211 777 aa11.21□□□□□ -0.61
GPNMB-207ENST00000468723 RTN4Q9NQC3 1192 aaKnown RBP11.2□□□□□ -0.62
GPNMB-207ENST00000468723 BMP2KQ9NSY1 1161 aaPredicted RBP11.2□□□□□ -0.62
GPNMB-207ENST00000468723 RIOK3O14730 519 aaKnown RBP11.18□□□□□ -0.62
GPNMB-207ENST00000468723 TIE1P35590 1138 aa11.18□□□□□ -0.62
GPNMB-207ENST00000468723 TMEM106CQ9BVX2 250 aa11.18□□□□□ -0.62
GPNMB-207ENST00000468723 ATMINO43313 823 aaPredicted RBP11.17□□□□□ -0.62
GPNMB-207ENST00000468723 PSEN1P49768 467 aa11.17□□□□□ -0.62
GPNMB-207ENST00000468723 ATN1P54259 1190 aaPredicted RBP11.17□□□□□ -0.62
GPNMB-207ENST00000468723 AMER1Q5JTC6 1135 aaPredicted RBP11.17□□□□□ -0.62
GPNMB-207ENST00000468723 TTLL13PA6NNM8 815 aa11.16□□□□□ -0.62
GPNMB-207ENST00000468723 ASTLQ6HA08 431 aaPredicted RBP11.15□□□□□ -0.62
GPNMB-207ENST00000468723 PELP1Q8IZL8 1130 aaKnown RBP11.15□□□□□ -0.62
GPNMB-207ENST00000468723 PDAP1Q13442 181 aaKnown RBP11.14□□□□□ -0.63
GPNMB-207ENST00000468723 VGFO15240 615 aaPredicted RBP11.11□□□□□ -0.63
GPNMB-207ENST00000468723 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.1□□□□□ -0.63
GPNMB-207ENST00000468723 ZFP91Q96JP5 570 aaPredicted RBP11.1□□□□□ -0.63
GPNMB-207ENST00000468723 TRIM35Q9UPQ4 493 aa11.1□□□□□ -0.63
GPNMB-207ENST00000468723 DCAF8L2P0C7V8 631 aa11.08□□□□□ -0.64
GPNMB-207ENST00000468723 TAOK2Q9UL54 1235 aa11.06□□□□□ -0.64
GPNMB-207ENST00000468723 CABP2Q9NPB3 220 aa11.05□□□□□ -0.64
GPNMB-207ENST00000468723 GOLGA2Q08379 1002 aa11.04□□□□□ -0.64
GPNMB-207ENST00000468723 STK25O00506 426 aa11.03□□□□□ -0.64
GPNMB-207ENST00000468723 SLC39A7Q92504 469 aa11.02□□□□□ -0.65
GPNMB-207ENST00000468723 BCL11BQ9C0K0 894 aaPredicted RBP11.02□□□□□ -0.65
GPNMB-207ENST00000468723 METRNQ9UJH8 293 aa11.02□□□□□ -0.65
GPNMB-207ENST00000468723 STK24Q9Y6E0 443 aa11.02□□□□□ -0.65
GPNMB-207ENST00000468723 C7P10643 843 aa10.99□□□□□ -0.65
GPNMB-207ENST00000468723 CHGAP10645 457 aaKnown RBP10.99□□□□□ -0.65
GPNMB-207ENST00000468723 MKRN3Q13064 507 aaKnown RBP10.99□□□□□ -0.65
GPNMB-207ENST00000468723 EFCAB3Q8N7B9 438 aa10.98□□□□□ -0.65
GPNMB-207ENST00000468723 SEC24BO95487 1268 aa10.97□□□□□ -0.65
GPNMB-207ENST00000468723 COLQQ9Y215 455 aaPredicted RBP10.96□□□□□ -0.65
GPNMB-207ENST00000468723 IER5LQ5T953 404 aa10.95□□□□□ -0.66
GPNMB-207ENST00000468723 POTEFA5A3E0 1075 aa10.94□□□□□ -0.66
GPNMB-207ENST00000468723 IRX5P78411 483 aaPredicted RBP10.92□□□□□ -0.66
GPNMB-207ENST00000468723 HS6ST3Q8IZP7 471 aa10.92□□□□□ -0.66
GPNMB-207ENST00000468723 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.92□□□□□ -0.66
GPNMB-207ENST00000468723 PLCG2P16885 1265 aa10.91□□□□□ -0.66
GPNMB-207ENST00000468723 OCEL1Q9H607 264 aa10.9□□□□□ -0.66
GPNMB-207ENST00000468723 POTEB2H3BUK9 544 aa10.89□□□□□ -0.67
GPNMB-207ENST00000468723 LHX8Q68G74 356 aa10.87□□□□□ -0.67
GPNMB-207ENST00000468723 PHF8Q9UPP1 1060 aa10.87□□□□□ -0.67
GPNMB-207ENST00000468723 SOX12O15370 315 aa10.86□□□□□ -0.67
GPNMB-207ENST00000468723 DPY19L2Q6NUT2 758 aa10.85□□□□□ -0.67
GPNMB-207ENST00000468723 PDCD7Q8N8D1 485 aaKnown RBP10.84□□□□□ -0.67
GPNMB-207ENST00000468723 MFRPQ9BY79 579 aa10.83□□□□□ -0.68
GPNMB-207ENST00000468723 POTEJP0CG39 1038 aa10.82□□□□□ -0.68
GPNMB-207ENST00000468723 ILDR1Q86SU0 546 aaPredicted RBP10.81□□□□□ -0.68
GPNMB-207ENST00000468723 NLRP6P59044 892 aa10.8□□□□□ -0.68
GPNMB-207ENST00000468723 NKX1-1Q15270 411 aaPredicted RBP10.8□□□□□ -0.68
GPNMB-207ENST00000468723 MS4A4AQ96JQ5 239 aa10.8□□□□□ -0.68
GPNMB-207ENST00000468723 PLSCR2Q9NRY7 297 aa10.8□□□□□ -0.68
GPNMB-207ENST00000468723 FBXO22Q8NEZ5 403 aa10.78□□□□□ -0.68
GPNMB-207ENST00000468723 DNAJC5Q9H3Z4 198 aa10.75□□□□□ -0.69
GPNMB-207ENST00000468723 L3MBTL3Q96JM7 780 aaPredicted RBP10.73□□□□□ -0.69
GPNMB-207ENST00000468723 G3V3G9 751 aa10.72□□□□□ -0.69
GPNMB-207ENST00000468723 BBXQ8WY36 941 aaPredicted RBP10.72□□□□□ -0.69
GPNMB-207ENST00000468723 OTUD5Q96G74 571 aa10.72□□□□□ -0.69
GPNMB-207ENST00000468723 PPP1R37O75864 691 aa10.71□□□□□ -0.69
GPNMB-207ENST00000468723 BOLA1Q9Y3E2 137 aa10.71□□□□□ -0.69
GPNMB-207ENST00000468723 SCUBE2Q9NQ36 999 aa10.7□□□□□ -0.7
GPNMB-207ENST00000468723 MAMSTRQ6ZN01 415 aa10.69□□□□□ -0.7
GPNMB-207ENST00000468723 GTPBP6O43824 516 aaPredicted RBP10.68□□□□□ -0.7
GPNMB-207ENST00000468723 MICALL2Q8IY33 904 aa10.67□□□□□ -0.7
GPNMB-207ENST00000468723 C3orf67Q6ZVT6 689 aa10.66□□□□□ -0.7
GPNMB-207ENST00000468723 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.65□□□□□ -0.7
GPNMB-207ENST00000468723 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.64□□□□□ -0.71
GPNMB-207ENST00000468723 CFAP44Q96MT7 982 aa10.63□□□□□ -0.71
GPNMB-207ENST00000468723 TMEM121BQ9BXQ6 578 aaPredicted RBP10.63□□□□□ -0.71
GPNMB-207ENST00000468723 RYDENQ9NUL5 291 aaKnown RBP10.63□□□□□ -0.71
GPNMB-207ENST00000468723 PAXIP1Q6ZW49 1069 aaPredicted RBP10.62□□□□□ -0.71
GPNMB-207ENST00000468723 SLAIN1Q8ND83 568 aa10.62□□□□□ -0.71
GPNMB-207ENST00000468723 SPRYD3Q8NCJ5 442 aa10.6□□□□□ -0.71
GPNMB-207ENST00000468723 TMEM92Q6UXU6 159 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms