RNA–Protein interactions for RNA: ENST00000467077.1

XRN1-206, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 674 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-206ENST00000467077 ASTLQ6HA08 431 aaPredicted RBP16.53■□□□□ 0.24
XRN1-206ENST00000467077 SLC39A7Q92504 469 aa16.53■□□□□ 0.24
XRN1-206ENST00000467077 METRNQ9UJH8 293 aa16.53■□□□□ 0.24
XRN1-206ENST00000467077 ATMINO43313 823 aaPredicted RBP16.49■□□□□ 0.23
XRN1-206ENST00000467077 C7P10643 843 aa16.48■□□□□ 0.23
XRN1-206ENST00000467077 CCDC61Q9Y6R9 512 aa16.44■□□□□ 0.22
XRN1-206ENST00000467077 MAMSTRQ6ZN01 415 aa16.39■□□□□ 0.21
XRN1-206ENST00000467077 POTEMA6NI47 508 aa16.38■□□□□ 0.21
XRN1-206ENST00000467077 MIER1Q8N108 512 aa16.37■□□□□ 0.21
XRN1-206ENST00000467077 KIF12Q96FN5 646 aa16.35■□□□□ 0.21
XRN1-206ENST00000467077 ATN1P54259 1190 aaPredicted RBP16.33■□□□□ 0.2
XRN1-206ENST00000467077 POTEGQ6S5H5 508 aa16.32■□□□□ 0.2
XRN1-206ENST00000467077 SCUBE2Q9NQ36 999 aa16.32■□□□□ 0.2
XRN1-206ENST00000467077 BMP2KQ9NSY1 1161 aaPredicted RBP16.26■□□□□ 0.19
XRN1-206ENST00000467077 MAP3K13O43283 966 aa16.25■□□□□ 0.19
XRN1-206ENST00000467077 TIE1P35590 1138 aa16.25■□□□□ 0.19
XRN1-206ENST00000467077 RASEFQ8IZ41 740 aa16.25■□□□□ 0.19
XRN1-206ENST00000467077 PLCD3Q8N3E9 789 aa16.25■□□□□ 0.19
XRN1-206ENST00000467077 POTEJP0CG39 1038 aa16.24■□□□□ 0.19
XRN1-206ENST00000467077 ZBTB47Q9UFB7 747 aaPredicted RBP16.2■□□□□ 0.18
XRN1-206ENST00000467077 TRPC6Q9Y210 931 aa16.2■□□□□ 0.18
XRN1-206ENST00000467077 PCDH10Q9P2E7 1040 aa16.16■□□□□ 0.18
XRN1-206ENST00000467077 SEC24BO95487 1268 aa16.15■□□□□ 0.18
XRN1-206ENST00000467077 TTLL13PA6NNM8 815 aa16.12■□□□□ 0.17
XRN1-206ENST00000467077 FAM163AQ96GL9 167 aaPredicted RBP16.11■□□□□ 0.17
XRN1-206ENST00000467077 PCDHB13Q9Y5F0 798 aa16.1■□□□□ 0.17
XRN1-206ENST00000467077 POTEFA5A3E0 1075 aa16.09■□□□□ 0.17
XRN1-206ENST00000467077 SGIP1Q9BQI5 828 aa16.09■□□□□ 0.17
XRN1-206ENST00000467077 TRIM35Q9UPQ4 493 aa16.05■□□□□ 0.16
XRN1-206ENST00000467077 FAM212AQ96EL1 285 aa16.04■□□□□ 0.16
XRN1-206ENST00000467077 IER5LQ5T953 404 aa16.03■□□□□ 0.16
XRN1-206ENST00000467077 COLQQ9Y215 455 aaPredicted RBP16.01■□□□□ 0.15
XRN1-206ENST00000467077 NUBP1P53384 320 aa16■□□□□ 0.15
XRN1-206ENST00000467077 LCE2DQ5TA82 110 aaPredicted RBP15.99■□□□□ 0.15
XRN1-206ENST00000467077 IFNL1Q8IU54 200 aa15.94■□□□□ 0.14
XRN1-206ENST00000467077 TMEM106CQ9BVX2 250 aa15.92■□□□□ 0.14
XRN1-206ENST00000467077 FKBP8Q14318 412 aa15.91■□□□□ 0.14
XRN1-206ENST00000467077 PLCG2P16885 1265 aa15.89■□□□□ 0.13
XRN1-206ENST00000467077 SLAIN1Q8ND83 568 aa15.85■□□□□ 0.13
XRN1-206ENST00000467077 DCAF8Q5TAQ9 597 aa15.8■□□□□ 0.12
XRN1-206ENST00000467077 PYGBP11216 843 aa15.76■□□□□ 0.11
XRN1-206ENST00000467077 FBXO3Q9UK99 471 aa15.76■□□□□ 0.11
XRN1-206ENST00000467077 IRX5P78411 483 aaPredicted RBP15.74■□□□□ 0.11
XRN1-206ENST00000467077 CDAN1Q8IWY9 1227 aa15.74■□□□□ 0.11
XRN1-206ENST00000467077 OCEL1Q9H607 264 aa15.7■□□□□ 0.1
XRN1-206ENST00000467077 ST18O60284 1047 aa15.69■□□□□ 0.1
XRN1-206ENST00000467077 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.64■□□□□ 0.09
XRN1-206ENST00000467077 PCDHB8Q9UN66 801 aa15.64■□□□□ 0.09
XRN1-206ENST00000467077 SNPHO15079 494 aa15.61■□□□□ 0.09
XRN1-206ENST00000467077 KLHL34Q8N239 644 aa15.61■□□□□ 0.09
XRN1-206ENST00000467077 GOLGA2Q08379 1002 aa15.6■□□□□ 0.09
XRN1-206ENST00000467077 GSE1Q14687 1217 aa15.59■□□□□ 0.09
XRN1-206ENST00000467077 ZNF467Q7Z7K2 595 aaPredicted RBP15.59■□□□□ 0.09
XRN1-206ENST00000467077 TMEM121BQ9BXQ6 578 aaPredicted RBP15.58■□□□□ 0.08
XRN1-206ENST00000467077 C3orf67Q6ZVT6 689 aa15.54■□□□□ 0.08
XRN1-206ENST00000467077 MKRN3Q13064 507 aaKnown RBP15.53■□□□□ 0.08
XRN1-206ENST00000467077 VASPP50552 380 aaPredicted RBP15.52■□□□□ 0.08
XRN1-206ENST00000467077 L3MBTL3Q96JM7 780 aaPredicted RBP15.47■□□□□ 0.07
XRN1-206ENST00000467077 PDCD7Q8N8D1 485 aaKnown RBP15.44■□□□□ 0.06
XRN1-206ENST00000467077 MARVELD3Q96A59 401 aa15.42■□□□□ 0.06
XRN1-206ENST00000467077 PSEN1P49768 467 aa15.41■□□□□ 0.06
XRN1-206ENST00000467077 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.41■□□□□ 0.061e-6■■■□□ 18.1
XRN1-206ENST00000467077 CHRM1P11229 460 aaPredicted RBP15.4■□□□□ 0.06
XRN1-206ENST00000467077 EMP3P54852 163 aa15.35■□□□□ 0.05
XRN1-206ENST00000467077 MMRN1Q13201 1228 aa15.34■□□□□ 0.05
XRN1-206ENST00000467077 PDAP1Q13442 181 aaKnown RBP15.33■□□□□ 0.04
XRN1-206ENST00000467077 SPNS2Q8IVW8 549 aa15.33■□□□□ 0.04
XRN1-206ENST00000467077 G3V3G9 751 aa15.32■□□□□ 0.04
XRN1-206ENST00000467077 CIZ1Q9ULV3 898 aaPredicted RBP15.27■□□□□ 0.04
XRN1-206ENST00000467077 SPOCK2Q92563 424 aa15.25■□□□□ 0.03
XRN1-206ENST00000467077 CABP2Q9NPB3 220 aa15.24■□□□□ 0.03
XRN1-206ENST00000467077 FAM205CA6NFA0 338 aa15.2■□□□□ 0.02
XRN1-206ENST00000467077 HS3ST6Q96QI5 342 aa15.2■□□□□ 0.02
XRN1-206ENST00000467077 ILDR1Q86SU0 546 aaPredicted RBP15.19■□□□□ 0.02
XRN1-206ENST00000467077 BOLA1Q9Y3E2 137 aa15.18■□□□□ 0.02
XRN1-206ENST00000467077 DPY19L2Q6NUT2 758 aa15.16■□□□□ 0.02
XRN1-206ENST00000467077 IFNLR1Q8IU57 520 aaPredicted RBP15.13■□□□□ 0.01
XRN1-206ENST00000467077 ZNF710Q8N1W2 664 aa15.11■□□□□ 0.01
XRN1-206ENST00000467077 KRTAP3-3Q9BYR6 98 aa15.09■□□□□ 0.01
XRN1-206ENST00000467077 KRTAP3-2Q9BYR7 98 aa15.09■□□□□ 0.01
XRN1-206ENST00000467077 DOK7Q18PE1 504 aa15.07■□□□□ 0
XRN1-206ENST00000467077 POTEB3A0JP26 581 aa15.06■□□□□ 0
XRN1-206ENST00000467077 POTEBQ6S5H4 581 aa15.06■□□□□ 0
XRN1-206ENST00000467077 TRIM41Q8WV44 630 aa15.05■□□□□ -0
XRN1-206ENST00000467077 HOXB3P14651 431 aaPredicted RBP15.03■□□□□ -0
XRN1-206ENST00000467077 RIMBP2O15034 1052 aa15.02■□□□□ -0
XRN1-206ENST00000467077 HOXB1P14653 301 aaPredicted RBP15□□□□□ -0.01
XRN1-206ENST00000467077 ERBB3P21860 1342 aa14.99□□□□□ -0.01
XRN1-206ENST00000467077 EFCAB3Q8N7B9 438 aa14.98□□□□□ -0.01
XRN1-206ENST00000467077 MICALL2Q8IY33 904 aa14.88□□□□□ -0.03
XRN1-206ENST00000467077 VARS2Q5ST30 1063 aaKnown RBP14.86□□□□□ -0.03
XRN1-206ENST00000467077 ZSWIM6Q9HCJ5 1215 aa14.85□□□□□ -0.03
XRN1-206ENST00000467077 SOX12O15370 315 aa14.84□□□□□ -0.03
XRN1-206ENST00000467077 RIOK3O14730 519 aaKnown RBP14.83□□□□□ -0.04
XRN1-206ENST00000467077 RNF166Q96A37 237 aaPredicted RBP14.82□□□□□ -0.04
XRN1-206ENST00000467077 VGFO15240 615 aaPredicted RBP14.78□□□□□ -0.04
XRN1-206ENST00000467077 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.77□□□□□ -0.05
XRN1-206ENST00000467077 TMEM92Q6UXU6 159 aa14.77□□□□□ -0.05
XRN1-206ENST00000467077 ZFP91Q96JP5 570 aaPredicted RBP14.77□□□□□ -0.05
XRN1-206ENST00000467077 ZNF687Q8N1G0 1237 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms